Wall clock time and date at job start Tue Mar 31 2020 05:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.33652 * 126.27371 * 90.02421 * 3 2 1 5 5 C 1.30638 * 109.00376 * 179.97438 * 4 3 2 6 6 O 1.33646 * 109.17415 * 359.97438 * 5 4 3 7 7 C 1.35369 * 107.68397 * 359.77734 * 6 5 4 8 8 C 1.46535 * 126.65603 * 180.24513 * 7 6 5 9 9 O 1.21607 * 119.99843 * 180.13949 * 8 7 6 10 10 O 1.34889 * 120.00035 * 0.13245 * 8 7 6 11 11 C 1.45195 * 116.99930 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47035 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47138 * 299.99894 * 12 11 10 14 14 C 1.52997 * 109.47330 * 59.99900 * 12 11 10 15 15 C 1.53003 * 109.47297 * 179.97438 * 12 11 10 16 16 C 1.50697 * 109.47415 * 179.97438 * 15 12 11 17 17 H 1.07999 * 119.99676 * 359.97438 * 16 15 12 18 18 C 1.37875 * 120.00313 * 180.02562 * 16 15 12 19 19 N 1.31516 * 120.00450 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99793 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47223 * 90.00174 * 20 18 16 22 22 H 1.48497 * 109.47069 * 210.00250 * 20 18 16 23 23 H 1.48501 * 109.47334 * 330.00205 * 20 18 16 24 24 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 25 25 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 27 27 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 28 28 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 29 29 H 1.07998 * 125.41466 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47123 * 300.00411 * 11 10 8 31 31 H 1.09000 * 109.47433 * 59.99923 * 11 10 8 32 32 H 1.08999 * 109.47222 * 60.00116 * 13 12 11 33 33 H 1.08999 * 109.47529 * 180.02562 * 13 12 11 34 34 H 1.09008 * 109.46970 * 299.99736 * 13 12 11 35 35 H 1.08996 * 109.47231 * 60.00004 * 14 12 11 36 36 H 1.08996 * 109.47242 * 180.02562 * 14 12 11 37 37 H 1.08999 * 109.47058 * 299.99902 * 14 12 11 38 38 H 1.09001 * 109.47086 * 300.00281 * 15 12 11 39 39 H 1.09010 * 109.46813 * 59.99939 * 15 12 11 40 40 H 0.96996 * 120.00303 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2964 2.1662 1.0775 5 6 2.7126 3.3422 0.6897 6 8 2.7278 3.3840 -0.6460 7 6 2.3072 2.1800 -1.0999 8 6 2.1706 1.7721 -2.5007 9 8 1.7767 0.6542 -2.7728 10 8 2.4816 2.6367 -3.4883 11 6 2.3215 2.1648 -4.8520 12 6 2.7202 3.2753 -5.8260 13 6 1.8264 4.4965 -5.6006 14 6 4.1813 3.6619 -5.5883 15 6 2.5522 2.7779 -7.2631 16 6 2.9443 3.8719 -8.2225 17 1 3.2794 4.8267 -7.8449 18 6 2.8742 3.6544 -9.5821 19 7 3.2169 4.6090 -10.4194 20 14 2.2939 2.0032 -10.2352 21 1 0.8201 2.0322 -10.4149 22 1 2.9465 1.7303 -11.5408 23 1 2.6538 0.9345 -9.2689 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.9997 4.1517 1.3444 30 1 2.9586 1.2950 -5.0127 31 1 1.2807 1.8889 -5.0213 32 1 1.9466 4.8507 -4.5768 33 1 2.1101 5.2875 -6.2948 34 1 0.7854 4.2210 -5.7701 35 1 4.8181 2.7920 -5.7488 36 1 4.4652 4.4534 -6.2818 37 1 4.3015 4.0162 -4.5645 38 1 3.1892 1.9081 -7.4234 39 1 1.5113 2.5022 -7.4328 40 1 3.1679 4.4558 -11.3759 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348348928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:11 Heat of formation + Delta-G solvation = -81.605797 kcal Electronic energy + Delta-G solvation = -22178.729287 eV Core-core repulsion = 18767.116201 eV Total energy + Delta-G solvation = -3411.613086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.78343 -40.28656 -37.50093 -36.14161 -35.40963 -33.26998 -32.33136 -30.27652 -28.02777 -26.77661 -26.48779 -24.96197 -23.94465 -22.73184 -21.73875 -20.76796 -18.59622 -18.06199 -17.30751 -17.10042 -16.86405 -16.27923 -16.02710 -15.22978 -14.38807 -14.25250 -13.88447 -13.85184 -13.65138 -13.34227 -13.00683 -12.65099 -12.50147 -12.30583 -11.83505 -11.50316 -11.40897 -11.38433 -11.24653 -11.09113 -11.00730 -10.68281 -10.64350 -10.48285 -10.43889 -9.90762 -9.78138 -9.58777 -9.34049 -9.03606 -8.56388 -6.06478 -4.04279 0.40298 2.00277 2.03974 2.63270 2.85808 3.28796 3.37028 3.39709 3.65023 4.28218 4.42639 4.56478 4.99216 5.03328 5.10816 5.22156 5.23966 5.27598 5.34424 5.38806 5.62406 5.68380 5.76123 5.84092 5.89038 6.01927 6.03296 6.21172 6.37182 6.45821 6.60486 6.63271 6.90969 7.02929 7.04762 7.14655 7.16854 7.30312 7.59600 7.74960 8.50553 8.97820 9.55270 11.06179 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.003685 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.434446 B = 7597.063002 C = 8234.593429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C 0.092 3.908 4 N -0.494 5.494 5 C 0.209 3.791 6 O -0.174 6.174 7 C -0.092 4.092 8 C 0.552 3.448 9 O -0.483 6.483 10 O -0.335 6.335 11 C 0.076 3.924 12 C -0.049 4.049 13 C -0.129 4.129 14 C -0.128 4.128 15 C -0.002 4.002 16 C -0.511 4.511 17 H 0.080 0.920 18 C 0.068 3.932 19 N -0.902 5.902 20 Si 0.874 3.126 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.260 0.740 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.383 -5.097 22.056 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 C -0.031 4.031 4 N -0.223 5.223 5 C -0.015 4.015 6 O -0.059 6.059 7 C -0.146 4.146 8 C 0.395 3.605 9 O -0.373 6.373 10 O -0.251 6.251 11 C 0.003 3.997 12 C -0.049 4.049 13 C -0.186 4.186 14 C -0.185 4.185 15 C -0.040 4.040 16 C -0.549 4.549 17 H 0.098 0.902 18 C -0.133 4.133 19 N -0.541 5.541 20 Si 0.702 3.298 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.191 1.191 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.104 0.896 29 H 0.275 0.725 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.515 -5.482 22.305 23.106 hybrid contribution -0.190 -0.516 -1.141 1.267 sum -2.705 -5.998 21.164 22.163 Atomic orbital electron populations 1.21653 0.93505 1.02547 1.02166 1.20233 0.96893 0.87492 1.04702 1.22122 0.96776 0.98190 0.86050 1.70395 1.17499 1.03329 1.31064 1.28454 0.96082 0.97456 0.79544 1.84611 1.63942 1.33303 1.24025 1.21754 1.13446 0.85834 0.93546 1.18923 0.75000 0.83127 0.83453 1.90915 1.43219 1.20274 1.82893 1.86663 1.77688 1.43404 1.17304 1.23664 1.01871 0.98846 0.75275 1.20607 0.96471 0.93555 0.94311 1.21744 0.98325 0.98232 1.00275 1.21737 0.94670 1.01884 1.00257 1.19628 0.96558 0.97555 0.90226 1.21028 1.44255 0.99734 0.89838 0.90205 1.24985 0.94927 0.96395 0.97041 1.69895 1.48794 1.32757 1.02662 0.86867 0.79177 0.85293 0.78477 1.20312 1.21392 1.19064 0.92334 0.91414 0.92526 0.88108 0.89644 0.72483 0.91125 0.91129 0.93983 0.90888 0.93740 0.93727 0.90888 0.93988 0.96291 0.96750 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.89 37.16 0.37 -0.95 16 2 C -0.06 -0.57 5.93 -27.88 -0.17 -0.74 16 3 C 0.09 1.11 6.42 -82.45 -0.53 0.58 16 4 N -0.49 -5.36 11.26 -10.87 -0.12 -5.48 16 5 C 0.21 1.74 13.20 52.25 0.69 2.43 16 6 O -0.17 -2.04 10.79 4.38 0.05 -1.99 16 7 C -0.09 -1.23 7.25 -36.89 -0.27 -1.49 16 8 C 0.55 8.38 7.93 34.07 0.27 8.65 16 9 O -0.48 -7.74 14.58 -19.35 -0.28 -8.02 16 10 O -0.34 -5.47 8.89 -42.00 -0.37 -5.84 16 11 C 0.08 1.31 4.33 37.15 0.16 1.47 16 12 C -0.05 -0.95 0.61 -154.51 -0.09 -1.05 16 13 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 14 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 15 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 16 C -0.51 -13.73 8.20 -34.44 -0.28 -14.01 16 17 H 0.08 2.28 5.92 -52.49 -0.31 1.97 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 20 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 1.12 6.45 -51.93 -0.34 0.78 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.26 0.63 8.06 -52.49 -0.42 0.21 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.71 7.68 -51.93 -0.40 0.31 16 33 H 0.07 1.49 6.62 -51.93 -0.34 1.15 16 34 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.49 6.62 -51.93 -0.34 1.15 16 37 H 0.04 0.71 7.68 -51.93 -0.40 0.31 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 39 H 0.01 0.33 7.57 -51.92 -0.39 -0.07 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -31.52 333.45 -4.90 -36.43 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.87 Total: -2.76 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 0.57 Total: -7.64 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.65 Total: -31.82 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.61 Total: -15.86 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.52 -4.90 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348348928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.178 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds