Wall clock time and date at job start Tue Mar 31 2020 05:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 112.11221 * 2 1 4 4 C 1.57289 * 112.47358 * 232.07249 * 2 1 3 5 5 C 1.52993 * 116.94197 * 59.99044 * 4 2 1 6 6 C 1.56214 * 100.39931 * 187.07423 * 4 2 1 7 7 C 1.55998 * 103.73556 * 35.93834 * 6 4 2 8 8 C 1.56093 * 103.36096 * 0.24894 * 7 6 4 9 9 C 1.50695 * 116.04501 * 197.14078 * 8 7 6 10 10 O 1.21274 * 120.00413 * 93.32432 * 9 8 7 11 11 N 1.34784 * 119.99635 * 273.05389 * 9 8 7 12 12 C 1.46499 * 119.99971 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99866 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99925 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00389 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99821 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46851 * 90.00139 * 17 15 13 19 19 H 1.48501 * 109.47218 * 209.99776 * 17 15 13 20 20 H 1.48503 * 109.47376 * 330.00226 * 17 15 13 21 21 O 1.47742 * 105.04179 * 67.53338 * 8 7 6 22 22 C 1.35052 * 108.93268 * 290.03452 * 21 8 7 23 23 O 1.20825 * 126.27753 * 179.28066 * 22 21 8 24 24 H 1.08997 * 109.47173 * 293.52883 * 1 2 3 25 25 H 1.09000 * 109.47289 * 53.52889 * 1 2 3 26 26 H 1.09003 * 109.47287 * 173.52639 * 1 2 3 27 27 H 1.08998 * 109.46960 * 186.47581 * 3 2 1 28 28 H 1.09003 * 109.46789 * 306.47440 * 3 2 1 29 29 H 1.08997 * 109.47229 * 66.47101 * 3 2 1 30 30 H 1.09005 * 109.47244 * 59.99628 * 5 4 2 31 31 H 1.08996 * 109.47300 * 179.97438 * 5 4 2 32 32 H 1.08996 * 109.47157 * 300.00195 * 5 4 2 33 33 H 1.09000 * 110.58953 * 155.12230 * 6 4 2 34 34 H 1.09002 * 110.58849 * 277.89579 * 6 4 2 35 35 H 1.09011 * 111.61513 * 241.43523 * 7 6 4 36 36 H 1.09005 * 109.99738 * 118.29050 * 7 6 4 37 37 H 0.96999 * 120.00044 * 0.02562 * 11 9 8 38 38 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 39 39 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 40 40 H 0.96998 * 120.00132 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1060 1.4174 0.0000 4 6 2.1313 -0.8934 -1.1465 5 6 1.7659 -0.5158 -2.5833 6 6 3.6481 -0.8445 -0.7759 7 6 3.6483 -0.8393 0.7841 8 6 2.1306 -0.8924 1.1452 9 6 1.7720 -0.5012 2.5556 10 8 1.4617 0.6438 2.8071 11 7 1.7909 -1.4253 3.5366 12 6 1.4428 -1.0450 4.9079 13 6 1.5420 -2.2521 5.8045 14 1 1.8345 -3.2072 5.3939 15 6 1.2581 -2.1375 7.1489 16 7 0.9004 -0.9748 7.6487 17 14 1.3803 -3.6340 8.2602 18 1 2.7555 -3.7294 8.8125 19 1 0.4073 -3.5039 9.3745 20 1 1.0754 -4.8584 7.4771 21 8 1.6789 -2.2293 0.7078 22 6 1.6770 -2.2713 -0.6421 23 8 1.3732 -3.2188 -1.3274 24 1 -0.3633 0.4102 0.9422 25 1 -0.3634 0.6109 -0.8264 26 1 -0.3634 -1.0211 -0.1159 27 1 3.1887 1.3697 -0.1159 28 1 1.6767 1.9840 -0.8264 29 1 1.8627 1.9085 0.9422 30 1 2.1086 0.4980 -2.7910 31 1 2.2449 -1.2095 -3.2743 32 1 0.6844 -0.5664 -2.7085 33 1 4.1662 -1.7208 -1.1654 34 1 4.1058 0.0696 -1.1540 35 1 4.1048 0.0668 1.1825 36 1 4.1619 -1.7244 1.1597 37 1 2.0357 -2.3419 3.3348 38 1 2.1314 -0.2756 5.2575 39 1 0.4240 -0.6580 4.9302 40 1 0.7003 -0.8943 8.5944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348468053.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:53 Heat of formation + Delta-G solvation = -110.980849 kcal Electronic energy + Delta-G solvation = -23408.099777 eV Core-core repulsion = 19995.212893 eV Total energy + Delta-G solvation = -3412.886884 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.46184 -38.86586 -37.66678 -35.93938 -34.33927 -32.46109 -32.03317 -31.28856 -28.14796 -27.24088 -26.30651 -25.15320 -23.05987 -22.46542 -20.80010 -19.62318 -19.00159 -17.44219 -16.83753 -16.38131 -16.14795 -15.64979 -15.35597 -14.68839 -14.50296 -14.41749 -13.99550 -13.60176 -13.28313 -13.20805 -12.79967 -12.65558 -12.43582 -12.33096 -12.14623 -12.05472 -11.91869 -11.77860 -11.44118 -11.33391 -11.20329 -11.03399 -10.92455 -10.76351 -10.37319 -10.19332 -9.90424 -9.46786 -9.21711 -8.80871 -8.05496 -6.21527 -4.28540 2.10142 2.55669 3.10370 3.22898 3.29361 3.32173 3.49326 3.68087 3.80025 4.04688 4.30191 4.45183 4.69500 4.75521 4.84506 5.02032 5.08614 5.11033 5.15317 5.35835 5.45932 5.50476 5.52845 5.61785 5.64235 5.68877 5.75453 5.81266 5.86733 5.91637 6.21167 6.30775 6.50863 7.15400 7.22531 7.39889 7.44753 7.58745 7.88786 8.43737 8.62900 8.87505 9.37948 10.88588 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028026 B = 0.004545 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.828717 B = 6159.415331 C = 6570.571714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.138 4.138 4 C -0.127 4.127 5 C -0.109 4.109 6 C -0.114 4.114 7 C -0.138 4.138 8 C 0.082 3.918 9 C 0.539 3.461 10 O -0.529 6.529 11 N -0.692 5.692 12 C 0.248 3.752 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 O -0.331 6.331 22 C 0.487 3.513 23 O -0.455 6.455 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.398 0.602 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.916 3.323 -18.211 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.060 4.060 3 C -0.195 4.195 4 C -0.129 4.129 5 C -0.166 4.166 6 C -0.151 4.151 7 C -0.176 4.176 8 C 0.042 3.958 9 C 0.321 3.679 10 O -0.408 6.408 11 N -0.339 5.339 12 C 0.127 3.873 13 C -0.583 4.583 14 H 0.083 0.917 15 C -0.138 4.138 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 O -0.248 6.248 22 C 0.328 3.672 23 O -0.339 6.339 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.231 0.769 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.428 3.588 -17.947 18.830 hybrid contribution 0.205 -1.342 0.640 1.501 sum 4.633 2.246 -17.307 18.057 Atomic orbital electron populations 1.21728 0.92254 1.02224 1.03796 1.23075 0.96773 0.96114 0.90011 1.21801 1.00712 0.92838 1.04140 1.23967 0.97514 0.93535 0.97886 1.21149 1.02380 1.01939 0.91123 1.22950 0.93313 1.03893 0.94953 1.23422 0.93303 1.05050 0.95780 1.25228 0.95950 0.79417 0.95192 1.18815 0.79333 0.86271 0.83507 1.90700 1.48957 1.19144 1.81975 1.46571 1.65168 1.11666 1.10484 1.19241 0.96719 0.96731 0.74567 1.21207 1.48672 0.95142 0.93306 0.91743 1.24928 0.94528 0.96462 0.97921 1.69962 1.44768 1.23564 1.13994 0.86401 0.78015 0.82409 0.80054 1.20405 1.20950 1.19651 1.87605 1.78513 1.35519 1.23117 1.23530 0.72833 0.89282 0.81601 1.90681 1.44820 1.40182 1.58221 0.90313 0.91251 0.92688 0.91751 0.91862 0.89374 0.90911 0.91291 0.91464 0.90254 0.88886 0.88065 0.89231 0.76891 0.95052 0.95090 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.40 37.16 0.31 -1.54 16 2 C -0.06 -0.73 0.49 -149.94 -0.07 -0.80 16 3 C -0.14 -1.47 8.38 37.16 0.31 -1.16 16 4 C -0.13 -1.40 1.00 -150.14 -0.15 -1.55 16 5 C -0.11 -0.93 9.46 37.15 0.35 -0.58 16 6 C -0.11 -1.06 5.36 -23.40 -0.13 -1.18 16 7 C -0.14 -1.58 5.53 -23.47 -0.13 -1.71 16 8 C 0.08 1.22 1.19 -87.89 -0.10 1.12 16 9 C 0.54 10.25 7.05 -10.98 -0.08 10.17 16 10 O -0.53 -11.28 14.61 5.56 0.08 -11.20 16 11 N -0.69 -14.48 5.53 -61.47 -0.34 -14.82 16 12 C 0.25 6.35 5.43 -5.20 -0.03 6.33 16 13 C -0.55 -14.61 9.28 -34.44 -0.32 -14.93 16 14 H 0.06 1.64 7.60 -52.49 -0.40 1.25 16 15 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 17 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 21 O -0.33 -5.37 10.23 -41.07 -0.42 -5.79 16 22 C 0.49 7.30 6.31 37.47 0.24 7.54 16 23 O -0.46 -7.93 17.90 -18.26 -0.33 -8.25 16 24 H 0.08 1.17 7.59 -51.93 -0.39 0.78 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.77 6.75 -51.93 -0.35 0.42 16 27 H 0.06 0.58 5.10 -51.93 -0.26 0.31 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.16 6.53 -51.93 -0.34 0.82 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.59 8.02 -51.93 -0.42 0.17 16 33 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 34 H 0.09 0.65 7.06 -51.93 -0.37 0.29 16 35 H 0.10 1.07 7.42 -51.92 -0.39 0.68 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.40 7.67 8.15 -40.82 -0.33 7.33 16 38 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 323.37 15.07 4.87 4.87 Total: -1.00 -31.18 323.37 -6.07 -37.26 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.76 Total: 3.63 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 0.11 Total: 3.38 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.40 Total: -39.64 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.67 Total: -25.23 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.18 -6.07 -37.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348468053.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.724 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds