Wall clock time and date at job start Tue Mar 31 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47481 * 2 1 4 4 C 1.50694 * 109.47524 * 239.99383 * 2 1 3 5 5 H 1.07995 * 120.00659 * 241.34757 * 4 2 1 6 6 C 1.37886 * 119.99601 * 61.34953 * 4 2 1 7 7 N 1.31513 * 119.99577 * 193.97414 * 6 4 2 8 8 Si 1.86795 * 119.99793 * 13.97874 * 6 4 2 9 9 H 1.48498 * 109.47304 * 84.54914 * 8 6 4 10 10 H 1.48511 * 109.46899 * 204.54612 * 8 6 4 11 11 H 1.48494 * 109.47419 * 324.54542 * 8 6 4 12 12 C 1.53005 * 109.46837 * 119.99545 * 2 1 3 13 13 N 1.46495 * 109.47375 * 300.00219 * 12 2 1 14 14 C 1.34779 * 120.00198 * 179.97438 * 13 12 2 15 15 O 1.21285 * 119.99713 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00057 * 180.02562 * 14 13 12 17 17 C 1.50705 * 110.91362 * 300.69760 * 16 14 13 18 18 O 1.20822 * 120.00008 * 239.30203 * 17 16 14 19 19 O 1.34228 * 119.99877 * 59.57476 * 17 16 14 20 20 C 1.54633 * 111.03863 * 64.66519 * 16 14 13 21 21 C 1.51161 * 104.69274 * 93.46934 * 20 16 14 22 22 C 1.30526 * 111.12264 * 16.38100 * 21 20 16 23 23 C 1.51095 * 111.10257 * 0.03290 * 22 21 20 24 24 H 1.08997 * 109.47281 * 309.37479 * 1 2 3 25 25 H 1.09009 * 109.46970 * 69.36850 * 1 2 3 26 26 H 1.08997 * 109.47351 * 189.36415 * 1 2 3 27 27 H 1.09001 * 109.47395 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46929 * 299.99988 * 3 2 1 29 29 H 1.09000 * 109.46748 * 59.99363 * 3 2 1 30 30 H 0.97006 * 119.99612 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47235 * 180.02562 * 12 2 1 32 32 H 1.09009 * 109.46910 * 60.00398 * 12 2 1 33 33 H 0.97000 * 120.00192 * 359.97438 * 13 12 2 34 34 H 0.96699 * 117.00140 * 179.72438 * 19 17 16 35 35 H 1.09007 * 110.38683 * 212.25080 * 20 16 14 36 36 H 1.08996 * 110.38532 * 334.62437 * 20 16 14 37 37 H 1.08006 * 124.43025 * 196.43124 * 21 20 16 38 38 H 1.08006 * 124.44878 * 180.02562 * 22 21 20 39 39 H 1.09008 * 110.38693 * 224.75285 * 23 22 21 40 40 H 1.08998 * 110.38615 * 102.38040 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6352 -1.6011 -1.1314 6 6 1.7224 -0.2235 -2.4825 7 7 1.9159 -0.9727 -3.5458 8 14 1.0277 1.5005 -2.6684 9 1 2.1418 2.4815 -2.7083 10 1 0.2471 1.5864 -3.9289 11 1 0.1418 1.8042 -1.5160 12 6 2.0399 -0.7212 1.2494 13 7 1.5515 -0.0306 2.4454 14 6 1.8766 -0.4913 3.6696 15 8 2.5732 -1.4779 3.7809 16 6 1.3738 0.2188 4.9000 17 6 1.8440 1.6505 4.9248 18 8 2.5175 2.0492 5.8452 19 8 1.5099 2.4839 3.9271 20 6 -0.1675 0.1390 4.9960 21 6 -0.4357 -1.0745 5.8565 22 6 0.6375 -1.4381 6.5044 23 6 1.8004 -0.5278 6.1852 24 1 -0.3634 0.6519 0.7944 25 1 -0.3633 0.3621 -0.9618 26 1 -0.3634 -1.0139 0.1672 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6982 -0.6300 -4.4268 31 1 3.1299 -0.7208 1.2497 32 1 1.6765 -1.7489 1.2494 33 1 0.9942 0.7583 2.3564 34 1 1.8314 3.3938 3.9889 35 1 -0.5654 1.0362 5.4705 36 1 -0.6033 0.0071 4.0057 37 1 -1.3901 -1.5754 5.9254 38 1 0.6876 -2.2792 7.1801 39 1 2.7018 -1.1130 6.0029 40 1 1.9637 0.1791 6.9986 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588754953.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:25 Heat of formation + Delta-G solvation = -95.337711 kcal Electronic energy + Delta-G solvation = -23234.520461 eV Core-core repulsion = 19822.311915 eV Total energy + Delta-G solvation = -3412.208547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.39186 -39.43603 -37.85391 -36.57092 -36.34541 -33.45558 -31.63347 -30.41875 -28.45422 -26.43365 -26.05210 -24.93390 -23.89862 -22.08681 -19.77556 -19.41543 -18.92249 -18.36427 -17.64900 -16.82903 -16.17042 -15.71596 -15.52842 -15.04549 -14.79140 -14.53579 -14.05486 -13.34380 -13.07015 -12.96287 -12.87188 -12.61531 -12.42566 -12.38542 -12.23553 -12.06048 -11.84117 -11.63622 -11.45281 -11.32340 -10.84464 -10.47542 -10.34825 -10.19671 -10.09512 -9.71033 -9.17452 -9.08449 -8.71296 -8.62732 -8.47663 -6.17029 -4.14471 1.79061 2.07698 2.40633 3.02015 3.22073 3.29135 3.36871 3.40725 3.95708 4.27819 4.33381 4.81362 4.93094 5.00753 5.13771 5.17894 5.36264 5.41857 5.64182 5.72649 5.74290 5.85045 6.01236 6.03608 6.18861 6.31373 6.34595 6.43284 6.49294 6.58274 6.64947 6.66561 6.70449 6.91389 7.17745 7.39501 7.57595 7.68811 7.79937 8.37295 8.45437 8.88207 9.46721 10.96011 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026324 B = 0.005031 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.426749 B = 5563.724035 C = 5934.543392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.029 3.971 3 C -0.149 4.149 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.140 3.860 13 N -0.709 5.709 14 C 0.525 3.475 15 O -0.527 6.527 16 C -0.085 4.085 17 C 0.502 3.498 18 O -0.503 6.503 19 O -0.508 6.508 20 C -0.078 4.078 21 C -0.174 4.174 22 C -0.146 4.146 23 C -0.078 4.078 24 H 0.022 0.978 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.033 0.967 30 H 0.265 0.735 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.403 0.597 34 H 0.416 0.584 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.720 6.027 17.500 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 C -0.206 4.206 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.018 3.982 13 N -0.361 5.361 14 C 0.308 3.692 15 O -0.404 6.404 16 C -0.089 4.089 17 C 0.343 3.657 18 O -0.390 6.390 19 O -0.320 6.320 20 C -0.116 4.116 21 C -0.192 4.192 22 C -0.164 4.164 23 C -0.115 4.115 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.240 0.760 34 H 0.276 0.724 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.118 0.882 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.167 5.000 17.555 18.970 hybrid contribution -0.354 1.970 -0.375 2.036 sum -5.521 6.970 17.180 19.345 Atomic orbital electron populations 1.22302 0.97799 0.99859 1.00050 1.18716 0.92566 0.92324 0.93614 1.22367 1.01136 0.98304 0.98763 1.20704 1.34135 1.12347 0.87961 0.90540 1.24970 0.94655 0.97294 0.95774 1.69952 1.48113 1.35905 0.98732 0.87296 0.79350 0.85557 0.76009 1.21380 1.23412 1.17456 1.21602 0.98726 0.95921 0.81905 1.46306 1.52419 1.31758 1.05603 1.19462 0.81064 0.84869 0.83854 1.90704 1.37610 1.25911 1.86177 1.21633 0.99652 0.89093 0.98559 1.22563 0.76456 0.87667 0.79042 1.90716 1.35723 1.77188 1.35339 1.84492 1.72770 1.26838 1.47886 1.21355 0.89679 0.98717 1.01829 1.23131 0.99513 0.97559 0.99027 1.23221 0.94385 0.98946 0.99820 1.21320 0.99611 0.97354 0.93248 0.95878 0.92464 0.93361 0.92888 0.94048 0.94790 0.92543 0.91826 0.91574 0.76026 0.72424 0.89288 0.89109 0.84820 0.84836 0.88182 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 7.53 37.16 0.28 -2.54 16 2 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 3 C -0.15 -2.95 7.52 37.16 0.28 -2.67 16 4 C -0.51 -13.56 8.62 -34.44 -0.30 -13.86 16 5 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 6 C 0.08 2.08 5.32 -17.82 -0.09 1.98 16 7 N -0.89 -26.33 13.96 55.43 0.77 -25.55 16 8 Si 0.89 20.74 22.79 -169.99 -3.87 16.86 16 9 H -0.29 -6.69 7.10 56.52 0.40 -6.29 16 10 H -0.31 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.25 -5.26 4.65 56.52 0.26 -4.99 16 12 C 0.14 2.75 4.49 -4.04 -0.02 2.74 16 13 N -0.71 -11.47 4.63 -60.29 -0.28 -11.75 16 14 C 0.52 8.51 6.51 -10.99 -0.07 8.44 16 15 O -0.53 -10.32 15.51 5.55 0.09 -10.23 16 16 C -0.08 -1.08 0.77 -155.09 -0.12 -1.20 16 17 C 0.50 6.16 6.91 36.01 0.25 6.41 16 18 O -0.50 -7.17 16.29 -18.75 -0.31 -7.48 16 19 O -0.51 -4.88 11.99 -39.25 -0.47 -5.35 16 20 C -0.08 -0.81 5.92 -26.80 -0.16 -0.97 16 21 C -0.17 -1.74 10.78 -35.67 -0.38 -2.12 16 22 C -0.15 -1.53 10.77 -35.70 -0.38 -1.92 16 23 C -0.08 -0.96 5.52 -26.83 -0.15 -1.11 16 24 H 0.02 0.37 7.13 -51.93 -0.37 0.00 16 25 H 0.06 1.21 4.30 -51.92 -0.22 0.99 16 26 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 29 H 0.03 0.56 6.86 -51.93 -0.36 0.20 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 33 H 0.40 5.82 4.99 -40.82 -0.20 5.62 16 34 H 0.42 2.20 9.10 45.56 0.41 2.62 16 35 H 0.09 0.76 7.88 -51.93 -0.41 0.35 16 36 H 0.09 0.94 7.76 -51.93 -0.40 0.53 16 37 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.10 1.38 6.97 -51.92 -0.36 1.02 16 40 H 0.10 1.14 7.01 -51.93 -0.36 0.77 16 LS Contribution 314.41 15.07 4.74 4.74 Total: -1.00 -32.30 314.41 -4.90 -37.20 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.62 Total: 7.83 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.95 Total: -6.27 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.49 Total: -37.30 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.69 Total: -23.06 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -3.87 Total: 16.86 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.30 -4.90 -37.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588754953.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.139 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds