Wall clock time and date at job start Tue Mar 31 2020 05:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00104 * 2 1 4 4 C 1.52999 * 109.47003 * 129.52290 * 3 2 1 5 5 C 1.50692 * 112.85436 * 298.95072 * 4 3 2 6 6 O 1.21292 * 120.00185 * 219.63558 * 5 4 3 7 7 N 1.34774 * 120.00081 * 39.90396 * 5 4 3 8 8 C 1.37100 * 120.00126 * 166.75030 * 7 5 4 9 9 H 1.08002 * 120.00157 * 185.05761 * 8 7 5 10 10 C 1.38946 * 119.99918 * 5.05960 * 8 7 5 11 11 N 1.31407 * 120.00166 * 5.14541 * 10 8 7 12 12 Si 1.86804 * 119.99834 * 185.15120 * 10 8 7 13 13 H 1.48491 * 109.47288 * 90.00138 * 12 10 8 14 14 H 1.48504 * 109.46809 * 210.00027 * 12 10 8 15 15 H 1.48496 * 109.46961 * 329.99571 * 12 10 8 16 16 C 1.46503 * 119.99821 * 346.74935 * 7 5 4 17 17 C 1.52998 * 109.46775 * 82.79894 * 16 7 5 18 18 C 1.50703 * 109.47209 * 197.61928 * 17 16 7 19 19 O 1.20826 * 119.99494 * 0.02562 * 18 17 16 20 20 O 1.34225 * 120.00372 * 179.97438 * 18 17 16 21 21 C 1.53780 * 113.68739 * 70.21881 * 4 3 2 22 22 C 1.53785 * 87.08357 * 89.12617 * 21 4 3 23 23 C 1.53785 * 87.07994 * 25.43161 * 22 21 4 24 24 H 1.08001 * 119.99837 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99909 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99837 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47237 * 9.52597 * 3 2 1 28 28 H 1.08999 * 109.47303 * 249.52695 * 3 2 1 29 29 H 0.97007 * 120.00142 * 184.99697 * 11 10 8 30 30 H 1.09002 * 109.47124 * 202.79831 * 16 7 5 31 31 H 1.09000 * 109.47350 * 322.79718 * 16 7 5 32 32 H 1.08999 * 109.47226 * 317.61907 * 17 16 7 33 33 H 1.09005 * 109.47290 * 77.62539 * 17 16 7 34 34 H 0.96695 * 116.99913 * 180.02562 * 20 18 17 35 35 H 1.09002 * 113.61448 * 203.67319 * 21 4 3 36 36 H 1.09000 * 113.61411 * 334.57357 * 21 4 3 37 37 H 1.09000 * 113.61094 * 270.88427 * 22 21 4 38 38 H 1.08997 * 113.61518 * 139.98024 * 22 21 4 39 39 H 1.08997 * 113.61294 * 220.01977 * 23 22 21 40 40 H 1.09004 * 113.61063 * 89.11814 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.1135 1.2877 1.1127 5 6 2.5101 1.1296 2.4844 6 8 2.9582 1.7578 3.4202 7 7 1.4759 0.2861 2.6726 8 6 1.1019 -0.0672 3.9433 9 1 0.3276 -0.8052 4.0929 10 6 1.7190 0.5241 5.0389 11 7 2.5880 1.4933 4.8596 12 14 1.3133 -0.0590 6.7666 13 1 2.2399 -1.1542 7.1498 14 1 1.4626 1.0713 7.7182 15 1 -0.0850 -0.5572 6.8053 16 6 0.7513 -0.2531 1.5191 17 6 1.5070 -1.4611 0.9615 18 6 1.0307 -1.7489 -0.4390 19 8 0.1750 -1.0583 -0.9399 20 8 1.5577 -2.7716 -1.1303 21 6 4.2856 0.3299 0.8412 22 6 4.9792 1.5052 0.1324 23 6 4.1322 2.4358 1.0164 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3675 2.1265 0.1701 28 1 2.5565 1.4400 -0.9627 29 1 3.0724 1.8567 5.6174 30 1 -0.2475 -0.5607 1.8288 31 1 0.6728 0.5137 0.7484 32 1 2.5752 -1.2453 0.9449 33 1 1.3214 -2.3293 1.5939 34 1 1.2206 -2.9168 -2.0248 35 1 4.7988 0.0008 1.7448 36 1 4.0310 -0.4936 0.1741 37 1 4.7420 1.5762 -0.9292 38 1 6.0488 1.5665 0.3332 39 1 3.7537 3.3124 0.4906 40 1 4.6035 2.6824 1.9679 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588763771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:40 Heat of formation + Delta-G solvation = 817.267511 kcal Electronic energy + Delta-G solvation = -25249.678925 eV Core-core repulsion = 21877.043911 eV Total energy + Delta-G solvation = -3372.635015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 4.47 seconds Orbital eigenvalues (eV) -49.76061 -40.07402 -38.14956 -36.98146 -36.57329 -32.51159 -31.41940 -31.08989 -28.60426 -25.07289 -24.93597 -24.12649 -23.12791 -22.28090 -21.28370 -20.34959 -18.84106 -17.88187 -16.75500 -16.35150 -15.93706 -15.47748 -15.10843 -14.69445 -14.38958 -14.17424 -13.83367 -13.45231 -13.05204 -12.82914 -12.57384 -12.25597 -11.88946 -11.53078 -11.43511 -11.38591 -10.87848 -10.82140 -10.51443 -10.25896 -10.01696 -9.90833 -9.74392 -9.46108 -8.79642 -8.59609 -8.31854 -8.10476 -7.80468 -6.84577 -4.64972 -3.48584 -2.63311 1.84903 2.69450 3.40386 3.41847 3.50928 3.53917 4.39736 4.59202 4.83406 4.89531 5.23367 5.34003 5.40611 5.46605 5.55823 5.68020 5.73097 5.82957 5.98016 6.06776 6.10982 6.19944 6.29952 6.41919 6.46147 6.46860 6.51581 6.58434 6.69350 6.76355 6.88393 6.93259 6.99717 7.21303 7.27765 7.36786 7.59658 7.64313 8.67096 9.04257 9.86644 10.02539 11.09572 11.64447 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.008691 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.667811 B = 3220.952277 C = 4222.913200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 C -0.659 4.659 3 C -0.029 4.029 4 C -0.110 4.110 5 C 0.392 3.608 6 O -0.338 6.338 7 N -0.504 5.504 8 C -0.322 4.322 9 H 0.086 0.914 10 C 0.006 3.994 11 N -0.668 5.668 12 Si 0.891 3.109 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.114 3.886 17 C -0.039 4.039 18 C 0.390 3.610 19 O -0.386 6.386 20 O -0.495 6.495 21 C -0.122 4.122 22 C -0.143 4.143 23 C -0.116 4.116 24 H 0.076 0.924 25 H 0.134 0.866 26 H 0.234 0.766 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.166 0.834 30 H 0.068 0.932 31 H 0.142 0.858 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.400 0.600 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 -5.803 -12.338 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 C -0.674 4.674 3 C -0.067 4.067 4 C -0.115 4.115 5 C 0.182 3.818 6 O -0.198 6.198 7 N -0.234 5.234 8 C -0.448 4.448 9 H 0.104 0.896 10 C -0.184 4.184 11 N -0.355 5.355 12 Si 0.717 3.283 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.208 1.208 16 C -0.006 4.006 17 C -0.077 4.077 18 C 0.272 3.728 19 O -0.294 6.294 20 O -0.305 6.305 21 C -0.160 4.160 22 C -0.180 4.180 23 C -0.154 4.154 24 H 0.093 0.907 25 H 0.144 0.856 26 H 0.245 0.755 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.003 0.997 30 H 0.085 0.915 31 H 0.156 0.844 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.259 0.741 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.605 -5.182 -11.367 12.595 hybrid contribution -0.295 -0.360 -0.429 0.633 sum -1.899 -5.542 -11.797 13.172 Atomic orbital electron populations 1.22355 0.96723 0.94850 0.82518 1.25637 0.96694 1.01799 1.43253 1.20202 0.96004 0.95523 0.94941 1.22836 0.94253 0.95652 0.98765 1.22591 0.79699 0.92870 0.86619 1.91145 1.68468 1.39774 1.20453 1.44022 1.31551 1.44469 1.03395 1.19644 1.20821 1.21813 0.82522 0.89598 1.27055 0.97252 0.94344 0.99750 1.71836 1.27159 1.25450 1.11089 0.86334 0.77751 0.77546 0.86660 1.21131 1.21718 1.20761 1.25864 0.92186 0.95083 0.87423 1.19906 1.03519 1.00104 0.84209 1.27891 0.74630 0.74573 0.95692 1.86272 1.44130 1.41176 1.57836 1.84827 1.60818 1.52235 1.32647 1.22828 0.98008 0.95785 0.99339 1.22794 0.98265 0.98473 0.98478 1.22873 0.97044 0.95897 0.99537 0.90705 0.85645 0.75451 0.93489 0.94172 0.99692 0.91475 0.84386 0.89337 0.93359 0.74135 0.90835 0.93032 0.91306 0.92694 0.93055 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 140. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 5.96 -23.59 -0.14 1.09 16 2 C -0.66 -11.09 3.01 -181.27 -0.55 -11.64 16 3 C -0.03 -0.55 4.67 -27.88 -0.13 -0.68 16 4 C -0.11 -2.30 0.70 -154.85 -0.11 -2.41 16 5 C 0.39 10.17 6.73 -10.99 -0.07 10.10 16 6 O -0.34 -10.03 9.65 24.02 0.23 -9.80 16 7 N -0.50 -12.52 2.64 -281.94 -0.75 -13.27 16 8 C -0.32 -8.72 9.76 -14.93 -0.15 -8.87 16 9 H 0.09 2.18 7.81 -52.49 -0.41 1.77 16 10 C 0.01 0.18 5.41 -17.47 -0.09 0.09 16 11 N -0.67 -20.28 7.31 55.50 0.41 -19.87 16 12 Si 0.89 21.67 29.56 -169.99 -5.02 16.64 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.11 2.18 3.03 -113.20 -0.34 1.84 16 17 C -0.04 -0.64 5.03 -75.31 -0.38 -1.02 16 18 C 0.39 5.13 5.71 -5.24 -0.03 5.10 16 19 O -0.39 -5.16 9.27 -18.75 -0.17 -5.34 16 20 O -0.49 -5.17 13.42 -39.25 -0.53 -5.69 16 21 C -0.12 -2.32 5.95 -25.92 -0.15 -2.48 16 22 C -0.14 -2.44 7.73 -25.91 -0.20 -2.64 16 23 C -0.12 -2.31 7.05 -25.91 -0.18 -2.49 16 24 H 0.08 1.14 7.80 -52.49 -0.41 0.73 16 25 H 0.13 1.78 4.47 -62.28 -0.28 1.50 16 26 H 0.23 3.73 0.92 -256.21 -0.24 3.49 16 27 H 0.05 0.93 7.68 -51.93 -0.40 0.53 16 28 H 0.04 0.72 7.30 -51.93 -0.38 0.34 16 29 H 0.17 4.97 8.32 -40.82 -0.34 4.63 16 30 H 0.07 1.22 6.97 -51.93 -0.36 0.86 16 31 H 0.14 2.59 0.78 -269.81 -0.21 2.38 16 32 H 0.09 1.62 3.92 -51.93 -0.20 1.41 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.40 2.19 9.10 45.56 0.41 2.61 16 35 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 36 H 0.05 0.91 6.45 -51.93 -0.33 0.57 16 37 H 0.07 1.08 7.60 -51.93 -0.39 0.68 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 40 H 0.09 1.90 7.36 -51.93 -0.38 1.52 16 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -32.62 282.91 -8.50 -41.13 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.41 Total: 5.95 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.53 Total: -14.01 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: -0.34 Total: -33.14 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.47 Total: -20.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.62 -8.50 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588763771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 858.395 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 825.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 817.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.47 seconds