Wall clock time and date at job start Tue Mar 31 2020 05:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 110.67450 * 2 1 4 4 O 1.21295 * 119.99977 * 107.68657 * 3 2 1 5 5 N 1.34773 * 120.00299 * 287.69213 * 3 2 1 6 6 C 1.37101 * 119.99883 * 355.58077 * 5 3 2 7 7 H 1.07995 * 119.99978 * 51.64558 * 6 5 3 8 8 C 1.38952 * 119.99964 * 231.64897 * 6 5 3 9 9 N 1.31418 * 120.00073 * 15.08564 * 8 6 5 10 10 Si 1.86798 * 119.99969 * 195.08876 * 8 6 5 11 11 H 1.48496 * 109.47258 * 239.99833 * 10 8 6 12 12 H 1.48506 * 109.46838 * 120.00121 * 10 8 6 13 13 H 1.48496 * 109.47014 * 0.02562 * 10 8 6 14 14 C 1.46501 * 119.99969 * 175.58117 * 5 3 2 15 15 C 1.53001 * 109.47080 * 272.86672 * 14 5 3 16 16 C 1.50698 * 109.46870 * 180.02562 * 15 14 5 17 17 O 1.20827 * 120.00598 * 359.97438 * 16 15 14 18 18 O 1.34229 * 119.99992 * 180.02562 * 16 15 14 19 19 C 1.54893 * 110.91485 * 236.65691 * 2 1 3 20 20 C 1.54267 * 104.19837 * 279.55455 * 19 2 1 21 21 H 1.09001 * 117.76265 * 116.74393 * 20 19 2 22 22 C 1.55469 * 118.30032 * 272.80583 * 20 19 2 23 23 C 1.52996 * 59.84308 * 93.28990 * 22 20 19 24 24 H 1.09001 * 119.30009 * 111.70529 * 23 22 20 25 25 C 1.54263 * 118.19886 * 265.85442 * 23 22 20 26 26 H 1.08998 * 109.47189 * 71.82024 * 1 2 3 27 27 H 1.09006 * 109.46792 * 191.81603 * 1 2 3 28 28 H 1.08999 * 109.47186 * 311.81622 * 1 2 3 29 29 H 0.97005 * 119.99489 * 358.71967 * 9 8 6 30 30 H 1.08999 * 109.47531 * 32.87290 * 14 5 3 31 31 H 1.09007 * 109.47046 * 152.87230 * 14 5 3 32 32 H 1.08995 * 109.47252 * 299.99950 * 15 14 5 33 33 H 1.08997 * 109.46572 * 60.00316 * 15 14 5 34 34 H 0.96702 * 117.00508 * 179.97438 * 18 16 15 35 35 H 1.09004 * 110.48518 * 38.23094 * 19 2 1 36 36 H 1.09004 * 110.48683 * 160.87288 * 19 2 1 37 37 H 1.08996 * 118.06243 * 346.15212 * 22 20 19 38 38 H 1.09005 * 117.18360 * 200.81661 * 22 20 19 39 39 H 1.09000 * 110.48945 * 330.31668 * 25 23 22 40 40 H 1.09008 * 110.60084 * 207.73251 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4099 0.0000 4 8 2.5747 1.8646 1.0008 5 7 1.9681 2.1657 -1.1119 6 6 1.4716 1.6236 -2.2692 7 1 0.5243 1.1051 -2.2597 8 6 2.1873 1.7414 -3.4545 9 7 3.4518 2.0981 -3.4258 10 14 1.3520 1.3927 -5.0885 11 1 2.0544 0.2795 -5.7759 12 1 1.4011 2.6091 -5.9390 13 1 -0.0636 1.0130 -4.8496 14 6 2.3965 3.5663 -1.0839 15 6 1.2336 4.4462 -0.6210 16 6 1.6742 5.8871 -0.5929 17 8 2.8026 6.1802 -0.9100 18 8 0.8132 6.8449 -0.2145 19 6 2.0829 -0.7953 -1.2087 20 6 1.9861 -2.2703 -0.7674 21 1 1.3275 -2.9279 -1.3348 22 6 3.1735 -2.8808 0.0291 23 6 1.9836 -2.2694 0.7714 24 1 1.3167 -2.9198 1.3374 25 6 2.0790 -0.7939 1.2113 26 1 -0.3633 0.3206 -0.9763 27 1 -0.3633 -1.0060 0.2104 28 1 -0.3633 0.6852 0.7659 29 1 3.8805 2.2973 -2.5787 30 1 3.2329 3.6768 -0.3938 31 1 2.7074 3.8713 -2.0833 32 1 0.3973 4.3358 -1.3113 33 1 0.9228 4.1413 0.3782 34 1 1.1416 7.7544 -0.2119 35 1 1.4698 -0.6206 -2.0929 36 1 3.1203 -0.5224 -1.4026 37 1 4.1145 -2.3310 0.0485 38 1 3.2643 -3.9671 0.0332 39 1 3.1156 -0.5207 1.4084 40 1 1.4644 -0.6164 2.0940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593743130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:03 Heat of formation + Delta-G solvation = -108.046377 kcal Electronic energy + Delta-G solvation = -23428.414352 eV Core-core repulsion = 20015.654717 eV Total energy + Delta-G solvation = -3412.759636 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13550 -39.77262 -37.83167 -35.91582 -35.18031 -32.80986 -31.90479 -30.23005 -27.66188 -26.40841 -25.07011 -24.36638 -22.22337 -20.78432 -19.81426 -19.21948 -18.91727 -17.86446 -17.01356 -16.17740 -15.79961 -15.59024 -15.14953 -14.81747 -14.26784 -13.88176 -13.48300 -13.38470 -12.91914 -12.83968 -12.66575 -12.17779 -11.81800 -11.68335 -11.52633 -11.31826 -11.26078 -11.04978 -10.99714 -10.75281 -10.44293 -10.39075 -10.33199 -10.26390 -10.02079 -9.69379 -9.55102 -9.20405 -8.97321 -8.43480 -7.71238 -6.63066 -4.24777 2.54708 3.25007 3.27714 3.29211 3.41156 3.78395 3.97673 4.19083 4.57919 4.93364 5.07361 5.17405 5.26549 5.43780 5.57227 5.58969 5.62045 5.74639 5.83425 5.91166 5.95066 6.11662 6.14139 6.19791 6.27282 6.37017 6.40342 6.52929 6.57717 6.60243 6.69694 6.72861 6.75729 6.87125 7.03649 7.13270 7.72186 7.95339 8.18524 8.36152 8.96971 9.37408 9.73506 10.62268 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.007167 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.835657 B = 3905.818666 C = 5134.869297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C 0.497 3.503 4 O -0.599 6.599 5 N -0.454 5.454 6 C -0.426 4.426 7 H 0.084 0.916 8 C 0.016 3.984 9 N -0.872 5.872 10 Si 1.076 2.924 11 H -0.283 1.283 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.122 3.878 15 C -0.121 4.121 16 C 0.483 3.517 17 O -0.515 6.515 18 O -0.523 6.523 19 C -0.061 4.061 20 C -0.164 4.164 21 H 0.105 0.895 22 C -0.163 4.163 23 C -0.166 4.166 24 H 0.101 0.899 25 C -0.070 4.070 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.279 0.721 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.402 0.598 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.611 -2.632 3.252 7.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.061 4.061 3 C 0.287 3.713 4 O -0.484 6.484 5 N -0.173 5.173 6 C -0.554 4.554 7 H 0.101 0.899 8 C -0.194 4.194 9 N -0.505 5.505 10 Si 0.902 3.098 11 H -0.209 1.209 12 H -0.209 1.209 13 H -0.208 1.208 14 C -0.002 4.002 15 C -0.160 4.160 16 C 0.325 3.675 17 O -0.403 6.403 18 O -0.335 6.335 19 C -0.098 4.098 20 C -0.182 4.182 21 H 0.123 0.877 22 C -0.200 4.200 23 C -0.184 4.184 24 H 0.119 0.881 25 C -0.108 4.108 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.260 0.740 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.914 -2.767 1.995 6.827 hybrid contribution -0.081 0.711 1.631 1.781 sum -5.995 -2.057 3.626 7.302 Atomic orbital electron populations 1.21669 0.93342 1.00945 1.02432 1.21422 0.96168 0.92729 0.95755 1.20620 0.79883 0.86955 0.83832 1.90536 1.48126 1.74617 1.35084 1.43399 1.57563 1.06435 1.09949 1.20254 1.07040 1.41318 0.86778 0.89859 1.26458 0.94779 0.95233 1.02894 1.70659 1.09374 1.39001 1.31420 0.83363 0.74947 0.77269 0.74189 1.20902 1.20947 1.20766 1.21165 0.93849 0.82584 1.02651 1.21800 1.03145 0.86094 1.04981 1.23770 0.82878 0.88865 0.71985 1.90710 1.21191 1.83612 1.44806 1.84582 1.47232 1.20675 1.80994 1.21951 1.02100 0.88317 0.97470 1.23864 1.01507 0.98922 0.93940 0.87715 1.23388 0.93402 0.99204 1.03995 1.23204 1.02056 0.97624 0.95562 0.88118 1.21789 1.01592 0.90727 0.96714 0.91054 0.92652 0.93559 0.90887 0.91402 0.89291 0.87454 0.88346 0.73979 0.88641 0.91710 0.89248 0.89182 0.91203 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.33 37.16 0.31 -1.83 16 2 C -0.06 -1.12 0.53 -153.67 -0.08 -1.20 16 3 C 0.50 11.47 6.43 -10.99 -0.07 11.40 16 4 O -0.60 -15.26 15.60 5.54 0.09 -15.17 16 5 N -0.45 -10.51 2.11 -114.81 -0.24 -10.75 16 6 C -0.43 -9.81 5.73 -14.93 -0.09 -9.89 16 7 H 0.08 1.85 4.90 -52.49 -0.26 1.59 16 8 C 0.02 0.40 4.99 -17.46 -0.09 0.31 16 9 N -0.87 -23.29 12.83 55.50 0.71 -22.57 16 10 Si 1.08 21.67 29.95 -169.99 -5.09 16.58 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 13 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 14 C 0.12 2.76 3.63 -4.04 -0.01 2.75 16 15 C -0.12 -2.28 6.12 -27.88 -0.17 -2.45 16 16 C 0.48 8.57 8.33 36.00 0.30 8.87 16 17 O -0.52 -10.73 16.74 -18.75 -0.31 -11.04 16 18 O -0.52 -7.20 13.42 -39.25 -0.53 -7.73 16 19 C -0.06 -1.17 4.13 -25.07 -0.10 -1.27 16 20 C -0.16 -2.60 6.80 -88.19 -0.60 -3.20 16 21 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 22 C -0.16 -2.39 10.21 -25.42 -0.26 -2.65 16 23 C -0.17 -2.51 6.36 -89.50 -0.57 -3.08 16 24 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 25 C -0.07 -1.25 5.07 -25.07 -0.13 -1.38 16 26 H 0.07 1.24 5.80 -51.93 -0.30 0.93 16 27 H 0.05 0.82 7.56 -51.93 -0.39 0.42 16 28 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 29 H 0.28 7.76 6.77 -40.82 -0.28 7.48 16 30 H 0.07 1.66 7.41 -51.93 -0.38 1.28 16 31 H 0.09 2.19 6.26 -51.93 -0.32 1.87 16 32 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 33 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 34 H 0.40 3.61 9.10 45.56 0.41 4.03 16 35 H 0.10 1.89 5.93 -51.93 -0.31 1.58 16 36 H 0.06 1.43 8.04 -51.93 -0.42 1.02 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.38 7.72 -51.93 -0.40 0.98 16 40 H 0.06 1.09 8.06 -51.92 -0.42 0.67 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -29.39 323.13 -6.89 -36.27 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -4.82 Total: 13.18 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.56 Total: -3.63 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.47 Total: -33.33 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.75 Total: -33.94 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.09 Total: 16.58 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.39 -6.89 -36.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593743130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.772 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds