Wall clock time and date at job start Tue Mar 31 2020 07:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 115.56217 * 2 1 4 4 C 1.53002 * 117.49545 * 214.30749 * 2 1 3 5 5 C 1.53004 * 60.00192 * 252.51227 * 4 2 1 6 6 C 1.50701 * 117.49660 * 107.49087 * 5 4 2 7 7 O 1.20824 * 119.99819 * 246.02542 * 6 5 4 8 8 O 1.34221 * 119.99954 * 65.75397 * 6 5 4 9 9 C 1.50697 * 117.49950 * 252.49228 * 5 4 2 10 10 O 1.21281 * 119.99774 * 320.49934 * 9 5 4 11 11 N 1.34774 * 120.00330 * 140.50100 * 9 5 4 12 12 C 1.46924 * 120.62970 * 4.13562 * 11 9 5 13 13 C 1.53620 * 108.54437 * 126.36700 * 12 11 9 14 14 C 1.53039 * 109.24231 * 54.86035 * 13 12 11 15 15 C 1.50704 * 109.46379 * 178.48973 * 14 13 12 16 16 H 1.07997 * 119.99818 * 120.06080 * 15 14 13 17 17 C 1.37872 * 119.99971 * 300.06792 * 15 14 13 18 18 N 1.31522 * 119.99933 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00120 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47255 * 89.99898 * 19 17 15 21 21 H 1.48498 * 109.46949 * 209.99853 * 19 17 15 22 22 H 1.48501 * 109.46869 * 330.00041 * 19 17 15 23 23 C 1.53040 * 109.53552 * 298.50836 * 14 13 12 24 24 C 1.46923 * 120.63205 * 184.41582 * 11 9 5 25 25 H 1.09004 * 109.46656 * 274.31143 * 1 2 3 26 26 H 1.08999 * 109.47155 * 34.31128 * 1 2 3 27 27 H 1.08998 * 109.47071 * 154.31231 * 1 2 3 28 28 H 1.09000 * 117.49638 * 145.02580 * 4 2 1 29 29 H 1.09001 * 117.51858 * 359.97438 * 4 2 1 30 30 H 0.96703 * 116.99957 * 180.27515 * 8 6 5 31 31 H 1.08998 * 109.59065 * 246.20446 * 12 11 9 32 32 H 1.09008 * 109.58582 * 6.62718 * 12 11 9 33 33 H 1.09000 * 109.63703 * 294.86441 * 13 12 11 34 34 H 1.09002 * 109.46144 * 174.74037 * 13 12 11 35 35 H 1.09005 * 109.46133 * 58.52833 * 14 13 12 36 36 H 0.96999 * 119.99837 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.50346 * 301.41350 * 23 14 13 38 38 H 1.09000 * 109.49837 * 181.31302 * 23 14 13 39 39 H 1.09001 * 109.58743 * 353.37092 * 24 11 9 40 40 H 1.09005 * 109.58847 * 113.65635 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2365 -1.1211 0.7651 6 6 1.3720 -2.1407 1.4609 7 8 0.4231 -1.7813 2.1170 8 8 1.6529 -3.4482 1.3473 9 6 3.5294 -0.7817 1.4609 10 8 4.5812 -1.1963 1.0219 11 7 3.5169 -0.0174 2.5709 12 6 2.2460 0.4172 3.1663 13 6 2.2375 0.0137 4.6485 14 6 3.4803 0.5858 5.3341 15 6 3.4582 0.2242 6.7969 16 1 4.2602 -0.3623 7.2203 17 6 2.4142 0.6419 7.5946 18 7 1.4378 1.3565 7.0790 19 14 2.3864 0.1931 9.4076 20 1 3.0792 1.2484 10.1896 21 1 0.9791 0.0795 9.8679 22 1 3.0787 -1.1055 9.6067 23 6 4.7373 0.0033 4.6838 24 6 4.7741 0.4021 3.2051 25 1 -0.3633 0.0773 1.0248 26 1 -0.3633 0.8488 -0.5793 27 1 -0.3633 -0.9261 -0.4454 28 1 3.1715 -0.8753 -1.2682 29 1 1.6114 -1.8590 -1.2680 30 1 1.0675 -4.0646 1.8083 31 1 2.1527 1.4997 3.0789 32 1 1.4164 -0.0660 2.6498 33 1 2.2436 -1.0731 4.7323 34 1 1.3425 0.4105 5.1278 35 1 3.4863 1.6707 5.2285 36 1 0.7034 1.6507 7.6403 37 1 4.7200 -1.0833 4.7673 38 1 5.6217 0.3933 5.1878 39 1 5.6132 -0.0910 2.7144 40 1 4.8841 1.4831 3.1186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594222386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:25 Heat of formation + Delta-G solvation = -105.074042 kcal Electronic energy + Delta-G solvation = -23447.830645 eV Core-core repulsion = 20035.199899 eV Total energy + Delta-G solvation = -3412.630746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13066 -39.35375 -37.41082 -36.64864 -35.92136 -33.50940 -31.28402 -30.06801 -29.10295 -26.45466 -25.43413 -23.46976 -22.52555 -21.76831 -20.82262 -19.61180 -18.78719 -17.84960 -17.27911 -16.30852 -16.20474 -15.79076 -14.98531 -14.68325 -14.53817 -14.17231 -13.68498 -13.34954 -13.15077 -12.97087 -12.76968 -12.60405 -12.40627 -12.29971 -11.77910 -11.66393 -11.46259 -11.32321 -11.00468 -10.93271 -10.63311 -10.50255 -10.37454 -10.17997 -10.07537 -9.67830 -9.46951 -9.17840 -8.90898 -8.37317 -8.06738 -6.01888 -4.08195 2.00998 2.56447 2.89485 3.17666 3.28797 3.35824 3.39259 3.59666 4.35329 4.41642 4.48631 4.62799 5.03722 5.07506 5.27785 5.32985 5.52811 5.65317 5.69781 5.72322 5.79412 5.88301 5.91753 6.09980 6.10310 6.16387 6.37645 6.41829 6.48971 6.64188 6.84644 7.01502 7.13859 7.30249 7.66497 7.79114 7.87302 7.92653 8.05404 8.37432 8.40967 8.94922 9.56812 11.03651 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022171 B = 0.005366 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.622641 B = 5216.666937 C = 5638.859519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 H 0.123 0.877 4 C -0.124 4.124 5 C -0.163 4.163 6 C 0.524 3.476 7 O -0.485 6.485 8 O -0.506 6.506 9 C 0.553 3.447 10 O -0.541 6.541 11 N -0.587 5.587 12 C 0.087 3.913 13 C -0.117 4.117 14 C 0.047 3.953 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.110 3.890 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.412 0.588 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.034 0.966 34 H 0.105 0.895 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 -3.277 -14.536 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.121 4.121 3 H 0.141 0.859 4 C -0.161 4.161 5 C -0.167 4.167 6 C 0.364 3.636 7 O -0.371 6.371 8 O -0.318 6.318 9 C 0.338 3.662 10 O -0.419 6.419 11 N -0.319 5.319 12 C -0.034 4.034 13 C -0.155 4.155 14 C 0.029 3.971 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.012 4.012 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.271 0.729 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.123 0.877 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.798 -3.021 -14.695 15.110 hybrid contribution -0.476 -0.686 1.537 1.750 sum -2.274 -3.707 -13.158 13.858 Atomic orbital electron populations 1.21556 0.91230 1.02064 1.04001 1.22660 0.96528 0.94254 0.98660 0.85907 1.23308 1.03429 1.00433 0.88962 1.20913 0.98094 1.00873 0.96840 1.21581 0.82511 0.81761 0.77712 1.90735 1.28530 1.80611 1.37234 1.84538 1.58635 1.17744 1.70893 1.18791 0.87671 0.78963 0.80791 1.90667 1.31662 1.53631 1.65937 1.48261 1.09314 1.49309 1.24981 1.22473 0.83770 0.99586 0.97582 1.22018 1.04367 0.99086 0.90057 1.18667 0.88833 0.95672 0.93952 1.21185 1.06856 1.33581 0.93460 0.92728 1.24961 0.95589 0.94977 0.98423 1.69841 1.10708 1.36878 1.35497 0.86616 0.77167 0.78846 0.85506 1.20698 1.21241 1.20009 1.22012 1.01191 1.00703 0.92222 1.21790 0.85276 0.99147 0.94948 0.89886 0.91254 0.92647 0.86710 0.87271 0.72896 0.91949 0.89405 0.94666 0.87686 0.95417 0.92961 0.92986 0.91945 0.90232 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.86 37.16 0.33 -1.04 16 2 C -0.10 -1.18 5.50 -90.61 -0.50 -1.68 16 3 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.12 -1.38 9.44 -26.73 -0.25 -1.64 16 5 C -0.16 -2.38 1.24 -156.81 -0.19 -2.57 16 6 C 0.52 7.84 6.65 36.01 0.24 8.08 16 7 O -0.48 -8.04 13.76 -18.75 -0.26 -8.30 16 8 O -0.51 -6.46 13.42 -39.23 -0.53 -6.98 16 9 C 0.55 9.92 6.88 -10.99 -0.08 9.85 16 10 O -0.54 -10.92 16.33 5.56 0.09 -10.83 16 11 N -0.59 -10.90 2.97 -172.50 -0.51 -11.41 16 12 C 0.09 1.67 6.12 -3.49 -0.02 1.65 16 13 C -0.12 -2.71 5.17 -26.39 -0.14 -2.85 16 14 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 15 C -0.51 -13.87 8.56 -34.44 -0.29 -14.16 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -24.82 11.31 55.43 0.63 -24.19 16 19 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.12 -2.57 5.30 -26.61 -0.14 -2.71 16 24 C 0.11 2.03 6.44 -3.71 -0.02 2.01 16 25 H 0.08 1.04 6.93 -51.93 -0.36 0.68 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 28 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.11 1.01 8.05 -51.93 -0.42 0.59 16 30 H 0.41 3.29 9.10 45.56 0.41 3.70 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.60 3.62 -51.92 -0.19 1.41 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.11 2.72 6.03 -51.93 -0.31 2.41 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 324.12 15.07 4.88 4.88 Total: -1.00 -31.61 324.12 -7.05 -38.67 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -4.98 Total: 4.58 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.35 Total: -2.53 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.12 Total: -35.60 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.69 Total: -26.11 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.61 -7.05 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594222386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.406 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds