Wall clock time and date at job start Tue Mar 31 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.47426 * 2 1 4 4 O 1.33634 * 125.80353 * 270.02581 * 3 2 1 5 5 C 1.34218 * 110.91833 * 179.97438 * 4 3 2 6 6 C 1.50707 * 125.42428 * 179.97438 * 5 4 3 7 7 N 1.46892 * 109.47267 * 270.02336 * 6 5 4 8 8 C 1.46907 * 111.00048 * 66.04358 * 7 6 5 9 9 C 1.53003 * 109.46970 * 62.07206 * 8 7 6 10 10 C 1.46893 * 111.00391 * 189.99881 * 7 6 5 11 11 C 1.50697 * 109.47615 * 168.97610 * 10 7 6 12 12 H 1.08006 * 120.00026 * 354.96025 * 11 10 7 13 13 C 1.37877 * 120.00360 * 174.95885 * 11 10 7 14 14 N 1.31520 * 119.99945 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99974 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47082 * 90.00497 * 15 13 11 17 17 H 1.48503 * 109.46719 * 210.00076 * 15 13 11 18 18 H 1.48502 * 109.47197 * 329.99944 * 15 13 11 19 19 C 1.34153 * 109.14951 * 359.97438 * 5 4 3 20 20 C 1.36495 * 125.81098 * 89.99966 * 3 2 1 21 21 C 1.47233 * 127.20069 * 0.03906 * 20 3 2 22 22 O 1.21533 * 119.99918 * 0.02562 * 21 20 3 23 23 O 1.34771 * 119.99923 * 179.97438 * 21 20 3 24 24 H 1.09003 * 109.46839 * 59.99820 * 1 2 3 25 25 H 1.08996 * 109.47089 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46535 * 300.00240 * 1 2 3 27 27 H 1.08999 * 109.46513 * 239.99396 * 2 1 3 28 28 H 1.09003 * 109.46839 * 120.00180 * 2 1 3 29 29 H 1.09006 * 109.47169 * 30.02527 * 6 5 4 30 30 H 1.09002 * 109.47372 * 150.01948 * 6 5 4 31 31 H 1.08997 * 109.47210 * 182.06891 * 8 7 6 32 32 H 1.08994 * 109.47044 * 302.07670 * 8 7 6 33 33 H 1.08997 * 109.47247 * 179.66385 * 9 8 7 34 34 H 1.08999 * 109.47430 * 299.66840 * 9 8 7 35 35 H 1.09006 * 109.46850 * 59.66610 * 9 8 7 36 36 H 1.09001 * 109.47409 * 288.97774 * 10 7 6 37 37 H 1.09000 * 109.46991 * 48.97232 * 10 7 6 38 38 H 0.97000 * 119.99786 * 179.97438 * 14 13 11 39 39 H 1.07997 * 127.02617 * 179.73374 * 19 5 4 40 40 H 0.96702 * 116.99963 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2926 2.1579 -1.0838 5 6 2.7247 3.3810 -0.7390 6 6 3.1113 4.4744 -1.7015 7 7 4.5425 4.3679 -2.0143 8 6 4.8289 3.1323 -2.7556 9 6 4.0792 3.1523 -4.0892 10 6 5.0084 5.5469 -2.7564 11 6 6.5138 5.5358 -2.8235 12 1 7.0725 4.7789 -2.2930 13 6 7.1781 6.4918 -3.5623 14 7 6.4979 7.4139 -4.2080 15 14 9.0443 6.4783 -3.6449 16 1 9.4829 5.6440 -4.7923 17 1 9.5418 7.8661 -3.8233 18 1 9.5915 5.9144 -2.3849 19 6 2.7576 3.4752 0.5988 20 6 2.2987 2.1737 1.1069 21 6 2.1560 1.7679 2.5150 22 8 1.7624 0.6511 2.7886 23 8 2.4629 2.6345 3.5004 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.5304 4.3735 -2.6184 30 1 2.9095 5.4452 -1.2487 31 1 5.9004 3.0607 -2.9423 32 1 4.5040 2.2731 -2.1690 33 1 4.2964 2.2383 -4.6418 34 1 3.0073 3.2180 -3.9025 35 1 4.3998 4.0150 -4.6734 36 1 4.5995 5.5255 -3.7665 37 1 4.6740 6.4515 -2.2483 38 1 6.9653 8.0867 -4.7274 39 1 3.0638 4.3302 1.1832 40 1 2.3536 2.3225 4.4092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597796398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:41 Heat of formation + Delta-G solvation = -82.271427 kcal Electronic energy + Delta-G solvation = -22219.473313 eV Core-core repulsion = 18807.831363 eV Total energy + Delta-G solvation = -3411.641950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.60323 -39.89135 -37.35149 -36.17754 -34.17290 -32.95437 -32.55629 -30.41521 -29.14051 -26.94754 -25.11578 -24.74200 -23.29380 -22.42692 -21.56913 -19.80997 -19.17543 -18.06672 -16.78439 -16.46822 -16.15189 -15.72585 -15.43191 -15.14016 -14.73519 -14.52027 -14.22926 -13.97897 -13.40452 -13.01444 -12.88873 -12.75671 -12.44349 -12.16249 -11.90383 -11.74340 -11.67031 -11.52455 -11.24548 -11.07496 -10.98320 -10.74834 -10.63153 -10.56213 -10.11289 -9.92274 -9.71785 -9.28689 -8.48782 -8.37679 -7.31275 -6.06242 -4.07313 1.13288 2.11571 2.67390 3.05855 3.12809 3.30216 3.36843 3.41458 4.37885 4.43300 4.71703 4.93792 5.02534 5.04593 5.18308 5.29317 5.29766 5.47768 5.59857 5.66650 5.75806 5.76669 5.85069 5.91752 5.98533 6.05781 6.09342 6.13865 6.39559 6.40518 6.48557 6.63795 6.86452 7.15893 7.22655 7.35519 7.74983 7.86398 7.99467 8.10032 8.46158 9.00379 9.57039 11.04359 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024488 B = 0.003894 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.139596 B = 7189.599618 C = 7764.131492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C 0.088 3.912 4 O -0.165 6.165 5 C 0.016 3.984 6 C 0.124 3.876 7 N -0.530 5.530 8 C 0.061 3.939 9 C -0.188 4.188 10 C 0.188 3.812 11 C -0.505 4.505 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.157 4.157 20 C -0.238 4.238 21 C 0.562 3.438 22 O -0.525 6.525 23 O -0.507 6.507 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.007 0.993 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.162 0.838 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.354 -11.496 8.901 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C 0.034 3.966 4 O -0.060 6.060 5 C -0.032 4.032 6 C -0.004 4.004 7 N -0.254 5.254 8 C -0.068 4.068 9 C -0.247 4.247 10 C 0.064 3.936 11 C -0.544 4.544 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.177 4.177 20 C -0.240 4.240 21 C 0.409 3.591 22 O -0.417 6.417 23 O -0.318 6.318 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.025 0.975 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.179 0.821 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -11.140 -11.556 8.591 18.205 hybrid contribution 0.616 0.095 -0.090 0.630 sum -10.524 -11.461 8.501 17.730 Atomic orbital electron populations 1.21697 0.93322 1.02586 1.02470 1.20409 0.96964 0.86586 1.05167 1.22730 0.96536 0.94042 0.83265 1.83786 1.64720 1.23196 1.34333 1.22547 1.01213 0.84258 0.95193 1.20682 0.92144 0.92443 0.95149 1.62442 1.10749 1.04900 1.47336 1.21980 1.01325 0.91867 0.91613 1.22371 0.99971 1.02266 1.00048 1.19831 0.96055 0.86007 0.91708 1.21111 0.90900 1.13085 1.29307 0.91849 1.24965 0.98584 0.95468 0.95474 1.69952 1.35514 1.16165 1.32209 0.86512 0.85402 0.77165 0.78446 1.20756 1.21267 1.19752 1.22539 1.04502 0.97421 0.93237 1.20033 1.16651 0.97298 0.90031 1.19688 0.72594 0.81552 0.85274 1.90848 1.44810 1.21508 1.84530 1.84626 1.80968 1.46783 1.19429 0.92323 0.91327 0.92118 0.89612 0.87173 0.93289 0.88001 0.89831 0.93107 0.93287 0.93666 0.91138 0.97511 0.95418 0.92903 0.82056 0.73130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.90 37.16 0.37 -0.98 16 2 C -0.05 -0.59 5.94 -27.88 -0.17 -0.75 16 3 C 0.09 1.22 6.63 -34.94 -0.23 0.99 16 4 O -0.16 -2.53 9.84 7.69 0.08 -2.45 16 5 C 0.02 0.26 5.85 -35.74 -0.21 0.05 16 6 C 0.12 2.13 5.27 -4.98 -0.03 2.11 16 7 N -0.53 -10.97 4.68 -237.52 -1.11 -12.08 16 8 C 0.06 1.17 5.71 -3.82 -0.02 1.15 16 9 C -0.19 -3.34 9.26 37.16 0.34 -3.00 16 10 C 0.19 4.64 4.53 -4.98 -0.02 4.61 16 11 C -0.51 -13.73 8.40 -34.44 -0.29 -14.02 16 12 H 0.06 1.73 7.38 -52.48 -0.39 1.34 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -25.93 13.29 55.43 0.74 -25.20 16 15 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 C -0.16 -2.40 10.93 -37.45 -0.41 -2.81 16 20 C -0.24 -3.45 6.32 -103.30 -0.65 -4.11 16 21 C 0.56 7.51 8.33 34.38 0.29 7.80 16 22 O -0.53 -7.49 15.63 -19.29 -0.30 -7.79 16 23 O -0.51 -5.47 13.34 -40.69 -0.54 -6.01 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.11 1.23 6.49 -51.93 -0.34 0.89 16 29 H 0.05 0.82 6.07 -51.93 -0.32 0.51 16 30 H 0.10 1.65 7.92 -51.93 -0.41 1.24 16 31 H 0.08 1.75 6.98 -51.93 -0.36 1.39 16 32 H 0.05 0.92 6.69 -51.93 -0.35 0.57 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.75 6.34 -51.93 -0.33 0.42 16 35 H 0.07 1.43 6.28 -51.93 -0.33 1.10 16 36 H 0.01 0.19 6.01 -51.93 -0.31 -0.13 16 37 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16 40 H 0.41 2.29 9.11 45.56 0.42 2.70 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -31.04 334.41 -7.05 -38.09 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.79 Total: 1.63 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -1.13 Total: -7.50 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.38 Total: -37.28 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.77 Total: -16.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.04 -7.05 -38.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597796398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.185 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds