Wall clock time and date at job start Tue Mar 31 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.46979 * 2 1 4 4 O 1.33628 * 125.80892 * 270.02379 * 3 2 1 5 5 C 1.34212 * 110.92715 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.43027 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47034 * 270.02258 * 6 5 4 8 8 C 1.46895 * 111.00099 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47336 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47444 * 180.02562 * 9 8 7 11 11 C 1.50694 * 109.47411 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99851 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00115 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00005 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00243 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46814 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47364 * 119.99362 * 15 13 11 18 18 H 1.48498 * 109.47437 * 239.99958 * 15 13 11 19 19 C 1.34164 * 109.14282 * 359.97438 * 5 4 3 20 20 C 1.36496 * 125.80677 * 90.00349 * 3 2 1 21 21 C 1.47231 * 127.20133 * 0.03644 * 20 3 2 22 22 O 1.21532 * 120.00209 * 0.02562 * 21 20 3 23 23 O 1.34774 * 119.99836 * 180.02562 * 21 20 3 24 24 H 1.08996 * 109.47179 * 299.99864 * 1 2 3 25 25 H 1.09005 * 109.46957 * 60.00211 * 1 2 3 26 26 H 1.09006 * 109.47062 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.47445 * 240.00223 * 2 1 3 28 28 H 1.08998 * 109.47788 * 119.99824 * 2 1 3 29 29 H 1.08990 * 109.47103 * 30.02134 * 6 5 4 30 30 H 1.08997 * 109.47252 * 150.02295 * 6 5 4 31 31 H 1.00902 * 110.99970 * 56.04006 * 7 6 5 32 32 H 1.08992 * 109.47371 * 300.00077 * 8 7 6 33 33 H 1.09000 * 109.47377 * 59.99940 * 8 7 6 34 34 H 1.09008 * 109.47305 * 300.00037 * 9 8 7 35 35 H 1.09000 * 109.46876 * 59.99708 * 9 8 7 36 36 H 1.09008 * 109.46712 * 300.00170 * 10 9 8 37 37 H 1.08993 * 109.47202 * 59.99708 * 10 9 8 38 38 H 0.97006 * 120.00120 * 180.02562 * 14 13 11 39 39 H 1.07999 * 127.02221 * 179.73892 * 19 5 4 40 40 H 0.96703 * 116.99869 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2924 2.1581 -1.0837 5 6 2.7244 3.3812 -0.7390 6 6 3.1109 4.4746 -1.7014 7 7 4.5422 4.3682 -2.0141 8 6 4.9557 5.4202 -2.9523 9 6 6.4491 5.2774 -3.2529 10 6 6.8799 6.3734 -4.2296 11 6 8.3507 6.2324 -4.5261 12 1 8.9212 5.4405 -4.0637 13 6 8.9680 7.1144 -5.3875 14 7 8.2731 8.0784 -5.9509 15 14 10.7912 6.9400 -5.7545 16 1 11.3395 5.7838 -5.0009 17 1 10.9842 6.7177 -7.2100 18 1 11.4994 8.1793 -5.3448 19 6 2.7572 3.4753 0.5989 20 6 2.2985 2.1738 1.1070 21 6 2.1559 1.7678 2.5150 22 8 1.7623 0.6510 2.7886 23 8 2.4617 2.6348 3.5005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.5302 4.3736 -2.6182 30 1 2.9091 5.4453 -1.2486 31 1 4.7664 3.4532 -2.3755 32 1 4.3879 5.3254 -3.8778 33 1 4.7667 6.3977 -2.5086 34 1 7.0168 5.3725 -2.3271 35 1 6.6386 4.2999 -3.6964 36 1 6.3123 6.2787 -5.1554 37 1 6.6905 7.3507 -3.7857 38 1 8.7073 8.6987 -6.5573 39 1 3.0633 4.3304 1.1834 40 1 2.3525 2.3227 4.4093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597801408.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:48 Heat of formation + Delta-G solvation = -101.762692 kcal Electronic energy + Delta-G solvation = -20861.591863 eV Core-core repulsion = 17449.104708 eV Total energy + Delta-G solvation = -3412.487155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.93571 -40.10729 -36.73320 -36.36360 -34.45915 -33.74924 -32.96680 -31.53714 -29.48749 -26.70887 -25.33146 -24.70244 -22.76023 -22.20395 -21.91219 -20.25163 -19.62334 -18.31122 -17.13398 -16.74914 -16.32614 -15.99706 -15.72622 -15.59415 -14.75939 -14.62404 -14.56487 -14.14472 -13.77151 -13.61371 -13.14779 -12.89298 -12.67053 -12.45485 -12.17590 -11.92681 -11.85131 -11.66220 -11.48030 -11.33114 -10.87903 -10.83845 -10.61617 -10.50494 -10.09578 -9.72793 -9.40446 -9.07683 -8.78047 -8.35569 -8.32342 -6.00143 -4.02113 0.85827 1.71943 2.32861 2.79305 2.86432 3.31430 3.38885 3.43493 4.04481 4.37093 4.43918 4.51855 4.72701 4.82155 4.88809 5.05475 5.07571 5.17889 5.35946 5.38912 5.46884 5.53156 5.65977 5.70967 5.73610 5.82236 5.84506 6.09200 6.19990 6.25332 6.64812 6.68312 6.80504 7.09876 7.17438 7.44846 7.64607 7.67794 7.81750 8.00149 8.43376 9.05284 9.62084 11.11347 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030086 B = 0.002420 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.437120 B =11568.234949 C =11841.145018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C 0.098 3.902 4 O -0.166 6.166 5 C -0.006 4.006 6 C 0.138 3.862 7 N -0.687 5.687 8 C 0.058 3.942 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.145 4.145 20 C -0.238 4.238 21 C 0.562 3.438 22 O -0.521 6.521 23 O -0.508 6.508 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.342 0.658 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.014 0.986 37 H 0.017 0.983 38 H 0.260 0.740 39 H 0.164 0.836 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.184 -13.370 14.890 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 C 0.044 3.956 4 O -0.062 6.062 5 C -0.055 4.055 6 C 0.009 3.991 7 N -0.319 5.319 8 C -0.069 4.069 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.557 4.557 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.164 4.164 20 C -0.241 4.241 21 C 0.408 3.592 22 O -0.413 6.413 23 O -0.319 6.319 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.131 0.869 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.160 0.840 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.182 0.818 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -17.053 -13.084 14.684 26.031 hybrid contribution 0.645 -0.348 -0.310 0.796 sum -16.408 -13.432 14.375 25.618 Atomic orbital electron populations 1.21704 0.93075 1.02862 1.02518 1.20473 0.97151 0.86266 1.05449 1.22826 0.95716 0.94050 0.83001 1.83747 1.64873 1.23042 1.34575 1.22318 1.03306 0.84716 0.95115 1.20427 0.90189 0.93195 0.95301 1.60659 1.13738 1.08189 1.49307 1.22188 0.98278 0.94077 0.92407 1.21634 0.91655 1.00669 1.00565 1.19072 0.96060 0.93012 0.93441 1.21290 0.94587 1.13502 1.26289 0.92600 1.25032 0.98164 0.95331 0.96037 1.69974 1.35869 1.17021 1.30753 0.86538 0.85473 0.78006 0.78003 1.19717 1.21055 1.21000 1.22606 1.03245 0.97445 0.93152 1.20066 1.16616 0.97124 0.90301 1.19626 0.72760 0.81634 0.85215 1.90868 1.44478 1.21440 1.84471 1.84605 1.80965 1.46736 1.19575 0.92046 0.92279 0.91089 0.89382 0.86933 0.93336 0.87625 0.83996 0.95307 0.91026 0.92402 0.93557 0.96758 0.96495 0.93080 0.81824 0.72851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.89 37.15 0.37 -0.69 16 2 C -0.06 -0.48 5.94 -27.88 -0.17 -0.64 16 3 C 0.10 1.08 6.63 -34.93 -0.23 0.85 16 4 O -0.17 -1.98 10.52 7.72 0.08 -1.90 16 5 C -0.01 -0.08 6.79 -35.74 -0.24 -0.32 16 6 C 0.14 1.58 6.20 -4.98 -0.03 1.55 16 7 N -0.69 -9.64 6.49 -115.07 -0.75 -10.39 16 8 C 0.06 0.96 5.68 -3.83 -0.02 0.93 16 9 C -0.11 -2.18 5.41 -26.73 -0.14 -2.32 16 10 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 11 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 12 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C -0.14 -1.67 10.93 -37.44 -0.41 -2.08 16 20 C -0.24 -2.78 6.32 -103.30 -0.65 -3.43 16 21 C 0.56 6.17 8.33 34.38 0.29 6.45 16 22 O -0.52 -6.35 15.63 -19.29 -0.30 -6.65 16 23 O -0.51 -4.31 13.34 -40.69 -0.54 -4.86 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.11 1.01 6.49 -51.93 -0.34 0.67 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.34 4.70 8.72 -39.29 -0.34 4.36 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.41 1.47 9.11 45.56 0.42 1.89 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -32.84 347.94 -7.65 -40.49 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.30 Total: 0.44 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.80 Total: -12.85 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.01 Total: -36.64 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.76 Total: -13.41 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.84 -7.65 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597801408.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.272 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds