Wall clock time and date at job start Tue Mar 31 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32995 * 1 3 3 C 1.50701 * 120.00190 * 2 1 4 4 C 1.52994 * 109.46916 * 94.49686 * 3 2 1 5 5 C 1.50701 * 109.46916 * 179.97438 * 4 3 2 6 6 O 1.20817 * 120.00234 * 0.02562 * 5 4 3 7 7 O 1.34234 * 119.99691 * 179.97438 * 5 4 3 8 8 C 1.47104 * 119.99669 * 180.02562 * 2 1 3 9 9 O 1.21611 * 119.99449 * 260.58513 * 8 2 1 10 10 N 1.34767 * 120.00324 * 80.58720 * 8 2 1 11 11 C 1.46928 * 120.63144 * 175.06395 * 10 8 2 12 12 C 1.53192 * 108.89034 * 233.55676 * 11 10 8 13 13 C 1.53079 * 109.29627 * 305.57376 * 12 11 10 14 14 C 1.50701 * 109.44159 * 181.23533 * 13 12 11 15 15 H 1.07998 * 120.00050 * 239.79890 * 14 13 12 16 16 C 1.37874 * 119.99697 * 59.79703 * 14 13 12 17 17 N 1.31518 * 120.00636 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99980 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46894 * 90.00267 * 18 16 14 20 20 H 1.48493 * 109.47263 * 210.00385 * 18 16 14 21 21 H 1.48496 * 109.46845 * 330.00570 * 18 16 14 22 22 C 1.53038 * 109.65515 * 61.15743 * 13 12 11 23 23 C 1.46927 * 120.63288 * 355.08228 * 10 8 2 24 24 H 1.08000 * 119.99923 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.00374 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47089 * 214.49766 * 3 2 1 27 27 H 1.08998 * 109.46809 * 334.49742 * 3 2 1 28 28 H 1.09002 * 109.47307 * 299.99946 * 4 3 2 29 29 H 1.09002 * 109.47105 * 59.99930 * 4 3 2 30 30 H 0.96701 * 116.99833 * 180.02562 * 7 5 4 31 31 H 1.08998 * 109.58251 * 353.41077 * 11 10 8 32 32 H 1.09002 * 109.58852 * 113.69857 * 11 10 8 33 33 H 1.09005 * 109.49738 * 65.38630 * 12 11 10 34 34 H 1.09002 * 109.49666 * 185.48337 * 12 11 10 35 35 H 1.08994 * 109.34792 * 301.12886 * 13 12 11 36 36 H 0.96999 * 120.00375 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.50010 * 178.75109 * 22 13 12 38 38 H 1.09004 * 109.53068 * 58.66591 * 22 13 12 39 39 H 1.09002 * 109.58462 * 246.15924 * 23 10 8 40 40 H 1.08998 * 109.58405 * 6.43928 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0835 1.3051 0.0000 4 6 2.4364 1.6901 1.4380 5 6 3.1905 2.9949 1.4380 6 8 3.4215 3.5591 0.3949 7 8 3.6047 3.5307 2.5970 8 6 2.0654 -1.2740 -0.0006 9 8 2.5186 -1.7148 1.0383 10 7 2.2370 -1.9525 -1.1522 11 6 3.0598 -3.1693 -1.1888 12 6 4.1215 -3.0174 -2.2827 13 6 3.4363 -2.6784 -3.6090 14 6 4.4753 -2.5581 -4.6939 15 1 4.5872 -1.6295 -5.2339 16 6 5.2830 -3.6335 -4.9971 17 7 5.1465 -4.7645 -4.3399 18 14 6.5704 -3.4848 -6.3425 19 1 7.8481 -3.0083 -5.7544 20 1 6.7810 -4.8116 -6.9750 21 1 6.1056 -2.5159 -7.3674 22 6 2.6831 -1.3529 -3.4752 23 6 1.6052 -1.4895 -2.3953 24 1 -0.5400 0.9353 0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 2.9987 1.1962 -0.5821 27 1 1.4619 2.0835 -0.4425 28 1 1.5213 1.7990 2.0201 29 1 3.0580 0.9117 1.8805 30 1 4.0841 4.3690 2.5465 31 1 3.5469 -3.3100 -0.2239 32 1 2.4290 -4.0306 -1.4088 33 1 4.8081 -2.2144 -2.0144 34 1 4.6748 -3.9510 -2.3848 35 1 2.7336 -3.4711 -3.8654 36 1 5.7145 -5.5213 -4.5535 37 1 2.2147 -1.1029 -4.4271 38 1 3.3810 -0.5639 -3.1948 39 1 0.8562 -2.2135 -2.7161 40 1 1.1303 -0.5232 -2.2257 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602776721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:36 Heat of formation + Delta-G solvation = -124.941830 kcal Electronic energy + Delta-G solvation = -22307.695539 eV Core-core repulsion = 18894.203261 eV Total energy + Delta-G solvation = -3413.492278 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47213 -39.79668 -36.95186 -36.41729 -35.29684 -33.51834 -31.43816 -30.90420 -29.97317 -26.32526 -25.55923 -23.72165 -22.57040 -21.63760 -21.06560 -19.34029 -18.38864 -17.85183 -16.77755 -16.60707 -16.40454 -15.98661 -15.48463 -14.97329 -14.56331 -14.12289 -13.75381 -13.52256 -13.30800 -13.03441 -12.76868 -12.65752 -12.35962 -12.24137 -11.91151 -11.73507 -11.69817 -11.28805 -11.18627 -10.94050 -10.77260 -10.66732 -10.43032 -10.12200 -9.63418 -9.58454 -9.45691 -9.08314 -8.93128 -8.38540 -8.04076 -6.02915 -4.09605 1.71926 2.03931 2.78809 2.95915 3.28685 3.35832 3.38551 3.50064 4.40809 4.60428 4.66838 4.79762 4.91674 5.25317 5.26898 5.41730 5.44274 5.49921 5.65734 5.77110 5.87291 5.91645 6.00851 6.15989 6.26524 6.31444 6.39285 6.40579 6.43116 6.61727 6.81553 6.94900 7.16837 7.31553 7.68232 7.70270 7.84938 7.91530 8.04798 8.38864 8.46556 8.93847 9.55749 11.02524 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019594 B = 0.004150 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.675829 B = 6744.890846 C = 7396.750044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C -0.062 4.062 4 C -0.109 4.109 5 C 0.479 3.521 6 O -0.515 6.515 7 O -0.519 6.519 8 C 0.547 3.453 9 O -0.552 6.552 10 N -0.592 5.592 11 C 0.108 3.892 12 C -0.122 4.122 13 C 0.048 3.952 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.124 4.124 23 C 0.105 3.895 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.409 0.591 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.105 0.895 35 H 0.027 0.973 36 H 0.261 0.739 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 11.599 10.209 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C -0.100 4.100 4 C -0.147 4.147 5 C 0.322 3.678 6 O -0.403 6.403 7 O -0.331 6.331 8 C 0.334 3.666 9 O -0.432 6.432 10 N -0.323 5.323 11 C -0.013 4.013 12 C -0.161 4.161 13 C 0.030 3.970 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.162 4.162 23 C -0.018 4.018 24 H 0.132 0.868 25 H 0.124 0.876 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.267 0.733 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.677 10.934 10.463 17.445 hybrid contribution 1.073 0.560 -0.861 1.485 sum -7.604 11.494 9.603 16.797 Atomic orbital electron populations 1.24326 0.93993 1.02887 0.97152 1.21531 0.95675 0.94427 1.03189 1.20333 1.01600 0.93120 0.94918 1.21367 1.01475 0.92004 0.99836 1.23599 0.76422 0.86990 0.80778 1.90742 1.53988 1.62295 1.33303 1.84553 1.69757 1.42300 1.36447 1.18507 0.80038 0.84284 0.83765 1.90764 1.51215 1.69681 1.31495 1.48275 1.48897 1.27042 1.08072 1.21929 0.93532 0.84595 1.01270 1.22031 0.96389 1.03833 0.93838 1.18645 0.94434 0.91043 0.92899 1.21189 1.17841 0.98140 1.17990 0.92690 1.24960 0.97299 0.95316 0.96355 1.69840 1.39636 1.02494 1.40998 0.86618 0.82009 0.77331 0.82189 1.20734 1.21246 1.19952 1.22009 0.96746 1.01394 0.96066 1.21901 0.96128 0.99109 0.84614 0.86849 0.87617 0.89629 0.89436 0.87382 0.86681 0.73270 0.90620 0.92197 0.94357 0.87733 0.95471 0.92944 0.92016 0.92810 0.91825 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 13.32 28.91 0.39 -1.06 16 2 C -0.15 -1.84 3.32 -102.84 -0.34 -2.18 16 3 C -0.06 -0.72 4.66 -27.89 -0.13 -0.85 16 4 C -0.11 -1.13 5.79 -27.89 -0.16 -1.29 16 5 C 0.48 5.27 8.33 36.01 0.30 5.57 16 6 O -0.52 -7.26 16.74 -18.74 -0.31 -7.57 16 7 O -0.52 -4.45 13.42 -39.27 -0.53 -4.97 16 8 C 0.55 9.29 7.08 -12.67 -0.09 9.20 16 9 O -0.55 -11.03 16.54 5.27 0.09 -10.94 16 10 N -0.59 -10.48 2.97 -174.16 -0.52 -11.00 16 11 C 0.11 2.14 6.41 -3.71 -0.02 2.12 16 12 C -0.12 -2.81 5.16 -26.59 -0.14 -2.95 16 13 C 0.05 1.14 2.06 -91.71 -0.19 0.95 16 14 C -0.51 -13.63 8.56 -34.44 -0.29 -13.92 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -24.69 11.30 55.43 0.63 -24.06 16 18 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.12 -2.38 5.30 -26.61 -0.14 -2.53 16 23 C 0.11 1.68 6.28 -3.71 -0.02 1.66 16 24 H 0.11 0.81 8.02 -52.49 -0.42 0.39 16 25 H 0.11 1.04 8.05 -52.49 -0.42 0.62 16 26 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 27 H 0.09 0.88 7.97 -51.93 -0.41 0.47 16 28 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.41 1.79 9.10 45.56 0.41 2.20 16 31 H 0.08 1.52 7.03 -51.93 -0.37 1.16 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.98 5.87 -51.93 -0.31 0.67 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -32.07 334.77 -6.73 -38.80 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.17 Total: 2.49 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -0.94 Total: -3.71 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.11 Total: -35.06 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.75 Total: -23.49 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.07 -6.73 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602776721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.144 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds