Wall clock time and date at job start Tue Mar 31 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32995 * 1 3 3 C 1.50701 * 120.00190 * 2 1 4 4 C 1.52994 * 109.46916 * 94.49686 * 3 2 1 5 5 C 1.50701 * 109.46916 * 179.97438 * 4 3 2 6 6 O 1.20817 * 120.00234 * 0.02562 * 5 4 3 7 7 O 1.34234 * 119.99691 * 179.97438 * 5 4 3 8 8 C 1.47104 * 119.99669 * 180.02562 * 2 1 3 9 9 O 1.21611 * 119.99449 * 260.58513 * 8 2 1 10 10 N 1.34767 * 120.00324 * 80.58720 * 8 2 1 11 11 C 1.46928 * 120.63144 * 175.06395 * 10 8 2 12 12 C 1.53192 * 108.89034 * 233.55676 * 11 10 8 13 13 C 1.53079 * 109.29627 * 305.57376 * 12 11 10 14 14 C 1.50701 * 109.44159 * 181.23533 * 13 12 11 15 15 H 1.07998 * 120.00050 * 239.79890 * 14 13 12 16 16 C 1.37874 * 119.99697 * 59.79703 * 14 13 12 17 17 N 1.31518 * 120.00636 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99980 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46894 * 90.00267 * 18 16 14 20 20 H 1.48493 * 109.47263 * 210.00385 * 18 16 14 21 21 H 1.48496 * 109.46845 * 330.00570 * 18 16 14 22 22 C 1.53038 * 109.65515 * 61.15743 * 13 12 11 23 23 C 1.46927 * 120.63288 * 355.08228 * 10 8 2 24 24 H 1.08000 * 119.99923 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.00374 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47089 * 214.49766 * 3 2 1 27 27 H 1.08998 * 109.46809 * 334.49742 * 3 2 1 28 28 H 1.09002 * 109.47307 * 299.99946 * 4 3 2 29 29 H 1.09002 * 109.47105 * 59.99930 * 4 3 2 30 30 H 0.96701 * 116.99833 * 180.02562 * 7 5 4 31 31 H 1.08998 * 109.58251 * 353.41077 * 11 10 8 32 32 H 1.09002 * 109.58852 * 113.69857 * 11 10 8 33 33 H 1.09005 * 109.49738 * 65.38630 * 12 11 10 34 34 H 1.09002 * 109.49666 * 185.48337 * 12 11 10 35 35 H 1.08994 * 109.34792 * 301.12886 * 13 12 11 36 36 H 0.96999 * 120.00375 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.50010 * 178.75109 * 22 13 12 38 38 H 1.09004 * 109.53068 * 58.66591 * 22 13 12 39 39 H 1.09002 * 109.58462 * 246.15924 * 23 10 8 40 40 H 1.08998 * 109.58405 * 6.43928 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0835 1.3051 0.0000 4 6 2.4364 1.6901 1.4380 5 6 3.1905 2.9949 1.4380 6 8 3.4215 3.5591 0.3949 7 8 3.6047 3.5307 2.5970 8 6 2.0654 -1.2740 -0.0006 9 8 2.5186 -1.7148 1.0383 10 7 2.2370 -1.9525 -1.1522 11 6 3.0598 -3.1693 -1.1888 12 6 4.1215 -3.0174 -2.2827 13 6 3.4363 -2.6784 -3.6090 14 6 4.4753 -2.5581 -4.6939 15 1 4.5872 -1.6295 -5.2339 16 6 5.2830 -3.6335 -4.9971 17 7 5.1465 -4.7645 -4.3399 18 14 6.5704 -3.4848 -6.3425 19 1 7.8481 -3.0083 -5.7544 20 1 6.7810 -4.8116 -6.9750 21 1 6.1056 -2.5159 -7.3674 22 6 2.6831 -1.3529 -3.4752 23 6 1.6052 -1.4895 -2.3953 24 1 -0.5400 0.9353 0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 2.9987 1.1962 -0.5821 27 1 1.4619 2.0835 -0.4425 28 1 1.5213 1.7990 2.0201 29 1 3.0580 0.9117 1.8805 30 1 4.0841 4.3690 2.5465 31 1 3.5469 -3.3100 -0.2239 32 1 2.4290 -4.0306 -1.4088 33 1 4.8081 -2.2144 -2.0144 34 1 4.6748 -3.9510 -2.3848 35 1 2.7336 -3.4711 -3.8654 36 1 5.7145 -5.5213 -4.5535 37 1 2.2147 -1.1029 -4.4271 38 1 3.3810 -0.5639 -3.1948 39 1 0.8562 -2.2135 -2.7161 40 1 1.1303 -0.5232 -2.2257 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602776721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:36 Heat of formation + Delta-G solvation = -145.635923 kcal Electronic energy + Delta-G solvation = -22308.592902 eV Core-core repulsion = 18894.203261 eV Total energy + Delta-G solvation = -3414.389641 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42399 -41.04142 -38.48123 -37.25035 -36.30075 -35.31312 -32.97533 -32.24215 -31.38432 -28.10149 -26.39423 -25.30572 -24.12134 -23.00470 -21.99284 -20.88978 -19.45803 -18.98256 -18.45862 -17.67969 -17.48097 -17.20056 -16.64245 -16.51372 -16.23125 -15.33228 -14.94909 -14.82844 -14.52869 -14.44663 -14.31908 -14.00002 -13.61692 -13.41057 -13.26827 -13.05612 -12.85968 -12.75284 -12.54138 -12.47111 -12.16918 -12.12595 -11.96462 -11.66325 -11.43418 -11.10738 -10.87109 -10.81704 -10.41915 -10.19814 -9.57534 -8.08658 -6.22471 0.86367 1.20689 1.40349 1.42254 1.51238 1.53525 2.11614 2.26734 2.43162 3.18058 3.52549 3.84926 3.96488 4.08397 4.12684 4.30870 4.34116 4.49027 4.49982 4.59757 4.67379 4.69632 4.74493 4.88309 4.89732 4.97906 5.05488 5.15613 5.23085 5.37777 5.44387 5.51194 5.53799 5.63359 5.66287 5.97054 6.10070 6.37579 6.50395 6.88927 6.99794 7.11950 7.45858 8.94807 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019594 B = 0.004150 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.675829 B = 6744.890846 C = 7396.750044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.175 4.175 3 C -0.054 4.054 4 C -0.107 4.107 5 C 0.486 3.514 6 O -0.551 6.551 7 O -0.514 6.514 8 C 0.545 3.455 9 O -0.589 6.589 10 N -0.598 5.598 11 C 0.119 3.881 12 C -0.111 4.111 13 C 0.045 3.955 14 C -0.533 4.533 15 H 0.052 0.948 16 C 0.014 3.986 17 N -0.915 5.915 18 Si 0.949 3.051 19 H -0.281 1.281 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.117 4.117 23 C 0.112 3.888 24 H 0.153 0.847 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.138 0.862 29 H 0.099 0.901 30 H 0.427 0.573 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.005 0.995 36 H 0.260 0.740 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 13.448 10.472 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.177 4.177 3 C -0.092 4.092 4 C -0.145 4.145 5 C 0.330 3.670 6 O -0.442 6.442 7 O -0.328 6.328 8 C 0.335 3.665 9 O -0.470 6.470 10 N -0.329 5.329 11 C -0.003 4.003 12 C -0.150 4.150 13 C 0.026 3.974 14 C -0.571 4.571 15 H 0.070 0.930 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.775 3.225 19 H -0.207 1.207 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.155 4.155 23 C -0.009 4.009 24 H 0.171 0.829 25 H 0.127 0.873 26 H 0.073 0.927 27 H 0.127 0.873 28 H 0.156 0.844 29 H 0.117 0.883 30 H 0.289 0.711 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.722 12.813 10.738 19.860 hybrid contribution 1.689 -0.016 -0.884 1.906 sum -9.033 12.797 9.854 18.505 Atomic orbital electron populations 1.24715 0.92649 1.04934 0.91962 1.21253 0.96388 0.92220 1.07882 1.20252 1.00562 0.93143 0.95238 1.21385 1.02405 0.91039 0.99627 1.23694 0.75749 0.86909 0.80614 1.90732 1.55523 1.63425 1.34556 1.84513 1.69589 1.43455 1.35217 1.19280 0.79405 0.85225 0.82631 1.90735 1.52746 1.70824 1.32733 1.48329 1.48809 1.26461 1.09301 1.21566 0.93132 0.86223 0.99420 1.21777 0.96767 1.01373 0.95038 1.18622 0.93818 0.92783 0.92145 1.21594 1.18726 0.97990 1.18823 0.93003 1.25691 0.99193 0.95160 0.98395 1.69971 1.40410 1.02997 1.42131 0.85690 0.79534 0.77408 0.79824 1.20696 1.20901 1.19177 1.21869 0.97234 0.98305 0.98089 1.21953 0.94971 1.01374 0.82641 0.82934 0.87276 0.92683 0.87277 0.84448 0.88286 0.71133 0.91429 0.91847 0.96189 0.90843 0.97681 0.93045 0.90851 0.93760 0.90533 0.87263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 13.32 66.65 0.89 -0.68 16 2 C -0.17 -3.93 3.32 -18.70 -0.06 -3.99 16 3 C -0.05 -1.14 4.66 29.85 0.14 -1.00 16 4 C -0.11 -2.01 5.79 29.85 0.17 -1.84 16 5 C 0.49 9.95 8.33 71.24 0.59 10.55 16 6 O -0.55 -15.00 16.74 21.99 0.37 -14.63 16 7 O -0.51 -7.84 13.42 -51.45 -0.69 -8.53 16 8 C 0.54 17.98 7.08 86.57 0.61 18.59 16 9 O -0.59 -23.57 16.54 -4.07 -0.07 -23.64 16 10 N -0.60 -20.80 2.97 -823.18 -2.45 -23.25 16 11 C 0.12 4.84 6.41 86.36 0.55 5.40 16 12 C -0.11 -5.30 5.16 30.69 0.16 -5.14 16 13 C 0.04 2.16 2.06 -11.50 -0.02 2.13 16 14 C -0.53 -28.85 8.56 25.60 0.22 -28.63 16 15 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 16 C 0.01 0.78 5.30 84.65 0.45 1.23 16 17 N -0.92 -52.17 11.30 21.45 0.24 -51.93 16 18 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 C -0.12 -4.42 5.30 30.67 0.16 -4.26 16 23 C 0.11 3.36 6.28 86.36 0.54 3.91 16 24 H 0.15 1.16 8.02 -2.91 -0.02 1.14 16 25 H 0.11 1.62 8.05 -2.91 -0.02 1.60 16 26 H 0.05 1.49 8.09 -2.39 -0.02 1.47 16 27 H 0.11 1.81 7.97 -2.39 -0.02 1.79 16 28 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.43 2.93 9.10 -74.06 -0.67 2.26 16 31 H 0.07 2.83 7.03 -2.39 -0.02 2.82 16 32 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.07 3.97 6.03 -2.39 -0.01 3.95 16 35 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 37 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.11 2.52 5.87 -2.39 -0.01 2.50 16 Total: -1.00 -71.95 334.77 4.20 -67.75 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.37 Total: 12.49 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 4.40 Total: -3.74 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -2.21 Total: -75.18 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -0.39 Total: -46.80 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -71.95 4.20 -67.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602776721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.890 kcal (2) G-P(sol) polarization free energy of solvation -71.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds