Wall clock time and date at job start Tue Mar 31 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99729 * 2 1 4 4 N 1.46903 * 109.46905 * 123.91212 * 3 2 1 5 5 C 1.46903 * 110.99517 * 173.55786 * 4 3 2 6 6 C 1.50707 * 109.47300 * 293.95193 * 5 4 3 7 7 H 1.08002 * 119.99345 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00100 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99778 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99907 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47202 * 270.00186 * 10 8 6 12 12 H 1.48503 * 109.46903 * 29.99857 * 10 8 6 13 13 H 1.48499 * 109.47284 * 149.99881 * 10 8 6 14 14 C 1.46892 * 110.99745 * 297.50633 * 4 3 2 15 15 C 1.53008 * 109.46988 * 160.50650 * 14 4 3 16 16 H 1.09000 * 110.43735 * 58.34698 * 15 14 4 17 17 C 1.54157 * 110.49546 * 180.90392 * 15 14 4 18 18 C 1.51462 * 103.26911 * 118.66852 * 17 15 14 19 19 C 1.41563 * 125.96942 * 180.02562 * 18 17 15 20 20 O 1.21662 * 119.99719 * 180.02562 * 19 18 17 21 21 O 1.34928 * 120.00281 * 0.02562 * 19 18 17 22 22 C 1.33859 * 108.05208 * 0.02562 * 18 17 15 23 23 C 1.50700 * 122.92927 * 180.02562 * 22 18 17 24 24 O 1.33753 * 114.14737 * 359.97438 * 22 18 17 25 25 H 1.08005 * 119.99564 * 185.01668 * 1 2 3 26 26 H 1.07996 * 120.00351 * 5.01865 * 1 2 3 27 27 H 1.07999 * 119.99885 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47418 * 3.90681 * 3 2 1 29 29 H 1.09005 * 109.46910 * 243.90652 * 3 2 1 30 30 H 1.09000 * 109.46865 * 173.95588 * 5 4 3 31 31 H 1.08997 * 109.47633 * 53.95054 * 5 4 3 32 32 H 0.96997 * 120.00530 * 0.02562 * 9 8 6 33 33 H 1.09004 * 109.47767 * 280.50212 * 14 4 3 34 34 H 1.09002 * 109.47598 * 40.51223 * 14 4 3 35 35 H 1.08999 * 110.66452 * 237.11491 * 17 15 14 36 36 H 1.09003 * 110.65958 * 0.22710 * 17 15 14 37 37 H 0.96692 * 113.99834 * 180.02562 * 21 19 18 38 38 H 1.08998 * 109.47782 * 85.49318 * 23 22 18 39 39 H 1.09002 * 109.47400 * 205.49522 * 23 22 18 40 40 H 1.09006 * 109.47009 * 325.49720 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9774 1.3429 1.1494 5 6 3.8385 2.5320 1.0984 6 6 4.7604 2.4342 -0.0897 7 1 4.7112 1.5747 -0.7419 8 6 5.6665 3.4418 -0.3440 9 7 5.7259 4.4885 0.4500 10 14 6.8097 3.3201 -1.8163 11 1 8.0633 2.6329 -1.4142 12 1 6.1456 2.5465 -2.8960 13 1 7.1291 4.6840 -2.3091 14 6 2.2342 1.2850 2.4151 15 6 3.1738 0.8423 3.5386 16 1 4.0148 1.5303 3.6247 17 6 2.4116 0.7517 4.8755 18 6 2.5471 -0.7084 5.2547 19 6 2.0149 -1.3187 6.4158 20 8 2.1906 -2.5062 6.6138 21 8 1.3128 -0.5836 7.3030 22 6 3.2581 -1.3206 4.3000 23 6 3.5929 -2.7894 4.3426 24 8 3.6447 -0.5155 3.3044 25 1 -0.5400 -0.9318 0.0818 26 1 -0.5400 0.9317 -0.0818 27 1 1.8499 -0.9353 0.0004 28 1 1.3572 2.1324 0.0700 29 1 2.6365 1.3938 -0.9230 30 1 4.4291 2.5924 2.0126 31 1 3.2200 3.4248 1.0058 32 1 5.1326 4.5515 1.2147 33 1 1.8317 2.2714 2.6457 34 1 1.4157 0.5709 2.3236 35 1 2.8768 1.3891 5.6274 36 1 1.3634 1.0179 4.7393 37 1 0.9904 -1.0869 8.0631 38 1 2.7700 -3.3622 3.9151 39 1 4.5003 -2.9721 3.7670 40 1 3.7505 -3.0963 5.3766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602891099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:13 Heat of formation + Delta-G solvation = -91.192618 kcal Electronic energy + Delta-G solvation = -22399.884460 eV Core-core repulsion = 18987.855658 eV Total energy + Delta-G solvation = -3412.028802 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27303 -39.70072 -37.34196 -36.06571 -33.57013 -33.03959 -32.85581 -31.58090 -28.54838 -26.68121 -25.63278 -23.80404 -23.24678 -22.01471 -20.86854 -19.50190 -19.24015 -17.94196 -17.27804 -16.73862 -16.27832 -15.45910 -15.20027 -15.01549 -14.73315 -14.13355 -13.86905 -13.71208 -13.58674 -13.21443 -13.06999 -12.82998 -12.53616 -12.37484 -11.82546 -11.69338 -11.64060 -11.53744 -11.36402 -11.21656 -11.01843 -10.79787 -10.70062 -10.40524 -10.21437 -10.09939 -9.10146 -8.71749 -8.42404 -8.35994 -7.45940 -6.41713 -4.11063 1.13915 2.51217 3.03008 3.07276 3.42779 3.45057 3.45467 3.61309 4.35868 4.51171 4.61673 4.88717 4.98215 5.03625 5.30621 5.34129 5.38348 5.43182 5.45324 5.51602 5.60564 5.68686 5.80206 5.84050 5.94958 6.00349 6.13031 6.16536 6.27487 6.39432 6.45757 6.78677 6.88617 6.91424 7.06729 7.08771 7.68753 7.86359 7.94665 8.22348 8.52881 8.81327 9.59226 10.97400 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018745 B = 0.004414 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.406676 B = 6341.444025 C = 6880.229810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.124 4.124 3 C 0.087 3.913 4 N -0.519 5.519 5 C 0.180 3.820 6 C -0.588 4.588 7 H 0.059 0.941 8 C 0.015 3.985 9 N -0.914 5.914 10 Si 1.074 2.926 11 H -0.287 1.287 12 H -0.288 1.288 13 H -0.285 1.285 14 C 0.045 3.955 15 C 0.084 3.916 16 H 0.110 0.890 17 C -0.086 4.086 18 C -0.361 4.361 19 C 0.556 3.444 20 O -0.541 6.541 21 O -0.509 6.509 22 C 0.218 3.782 23 C -0.115 4.115 24 O -0.258 6.258 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.025 0.975 29 H 0.096 0.904 30 H 0.022 0.978 31 H -0.018 1.018 32 H 0.266 0.734 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.403 0.597 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 -10.237 8.695 16.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.143 4.143 3 C -0.041 4.041 4 N -0.243 5.243 5 C 0.055 3.945 6 C -0.626 4.626 7 H 0.077 0.923 8 C -0.188 4.188 9 N -0.550 5.550 10 Si 0.902 3.098 11 H -0.214 1.214 12 H -0.214 1.214 13 H -0.211 1.211 14 C -0.084 4.084 15 C 0.029 3.971 16 H 0.128 0.872 17 C -0.124 4.124 18 C -0.364 4.364 19 C 0.407 3.593 20 O -0.436 6.436 21 O -0.319 6.319 22 C 0.165 3.835 23 C -0.171 4.171 24 O -0.166 6.166 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.128 0.872 28 H 0.043 0.957 29 H 0.114 0.886 30 H 0.040 0.960 31 H -0.001 1.001 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.259 0.741 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.191 -9.899 7.309 14.253 hybrid contribution -2.107 -0.140 1.523 2.604 sum -9.298 -10.040 8.832 16.287 Atomic orbital electron populations 1.23740 0.95968 1.01299 1.04479 1.23143 0.95374 0.99520 0.96251 1.21138 0.93922 0.92500 0.96519 1.61977 1.19559 1.43792 0.98969 1.19919 0.91370 0.84919 0.98279 1.21970 1.20913 1.08050 1.11689 0.92309 1.25837 0.98100 0.92548 1.02336 1.70782 1.39083 1.29554 1.15628 0.83464 0.75670 0.75844 0.74796 1.21390 1.21424 1.21109 1.22398 0.95132 0.99809 0.91040 1.23909 0.98135 0.80948 0.94087 0.87206 1.21503 1.01871 0.93325 0.95723 1.19405 1.18744 0.97741 1.00519 1.18211 0.75065 0.83973 0.82092 1.90864 1.58882 1.16490 1.77394 1.85075 1.66781 1.44543 1.35453 1.22262 0.83690 0.93476 0.84076 1.21070 1.03525 0.86599 1.05928 1.86944 1.68178 1.20579 1.40854 0.88960 0.89076 0.87233 0.95691 0.88558 0.96007 1.00083 0.92380 0.93393 0.90621 0.89701 0.89763 0.74108 0.88652 0.89892 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.93 14.23 29.02 0.41 -2.52 16 2 C -0.12 -1.96 8.26 -36.02 -0.30 -2.26 16 3 C 0.09 1.64 5.26 -4.97 -0.03 1.62 16 4 N -0.52 -10.69 4.41 -237.50 -1.05 -11.74 16 5 C 0.18 4.44 3.86 -4.97 -0.02 4.42 16 6 C -0.59 -16.13 8.42 -34.44 -0.29 -16.42 16 7 H 0.06 1.63 7.14 -52.49 -0.37 1.25 16 8 C 0.02 0.43 5.46 -17.82 -0.10 0.34 16 9 N -0.91 -27.16 13.65 55.43 0.76 -26.41 16 10 Si 1.07 24.94 29.90 -169.99 -5.08 19.86 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 14 C 0.05 0.77 4.41 -3.82 -0.02 0.75 16 15 C 0.08 1.36 3.89 -26.12 -0.10 1.25 16 16 H 0.11 1.90 6.80 -51.93 -0.35 1.55 16 17 C -0.09 -1.17 6.44 -26.90 -0.17 -1.34 16 18 C -0.36 -5.05 6.06 -104.52 -0.63 -5.69 16 19 C 0.56 7.39 8.07 32.00 0.26 7.65 16 20 O -0.54 -7.91 14.84 -19.39 -0.29 -8.20 16 21 O -0.51 -5.44 13.34 -41.12 -0.55 -5.99 16 22 C 0.22 3.13 7.05 -35.85 -0.25 2.88 16 23 C -0.12 -1.33 9.47 36.01 0.34 -0.99 16 24 O -0.26 -4.34 10.70 -13.31 -0.14 -4.48 16 25 H 0.09 1.08 8.06 -52.48 -0.42 0.66 16 26 H 0.09 1.19 7.85 -52.49 -0.41 0.78 16 27 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.02 0.47 7.80 -51.93 -0.41 0.06 16 29 H 0.10 2.02 6.71 -51.93 -0.35 1.67 16 30 H 0.02 0.56 6.49 -51.93 -0.34 0.22 16 31 H -0.02 -0.48 7.99 -51.93 -0.41 -0.89 16 32 H 0.27 7.84 7.22 -40.82 -0.29 7.54 16 33 H 0.05 0.79 8.00 -51.93 -0.42 0.38 16 34 H 0.08 1.21 6.61 -51.93 -0.34 0.87 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.06 7.74 -51.93 -0.40 0.66 16 37 H 0.40 2.42 8.98 45.56 0.41 2.83 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.11 1.29 6.18 -51.93 -0.32 0.97 16 LS Contribution 335.10 15.07 5.05 5.05 Total: -1.00 -31.83 335.10 -7.12 -38.96 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.92 Total: 3.26 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.90 Total: -10.32 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.29 Total: -38.14 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.98 Total: -18.67 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.83 -7.12 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602891099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.236 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds