Wall clock time and date at job start Tue Mar 31 2020 05:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.63823 * 2 1 4 4 O 1.21287 * 119.99850 * 111.91515 * 3 2 1 5 5 N 1.34776 * 120.00132 * 291.91144 * 3 2 1 6 6 C 1.37101 * 119.99930 * 5.11594 * 5 3 2 7 7 H 1.08005 * 119.99958 * 50.85688 * 6 5 3 8 8 C 1.38947 * 119.99908 * 230.86034 * 6 5 3 9 9 N 1.31420 * 119.99713 * 201.14604 * 8 6 5 10 10 Si 1.86794 * 120.00161 * 21.14056 * 8 6 5 11 11 H 1.48507 * 109.47045 * 93.69007 * 10 8 6 12 12 H 1.48498 * 109.47364 * 213.68440 * 10 8 6 13 13 H 1.48493 * 109.47404 * 333.68737 * 10 8 6 14 14 C 1.46497 * 119.99896 * 185.11367 * 5 3 2 15 15 C 1.53002 * 109.47043 * 275.13875 * 14 5 3 16 16 C 1.50705 * 109.46602 * 180.02562 * 15 14 5 17 17 O 1.20823 * 120.00260 * 359.97438 * 16 15 14 18 18 O 1.34231 * 119.99645 * 180.02562 * 16 15 14 19 19 C 1.53024 * 109.64139 * 120.41752 * 2 1 3 20 20 C 1.50071 * 110.14191 * 169.33110 * 19 2 1 21 21 C 1.29440 * 124.07893 * 342.87223 * 20 19 2 22 22 C 1.50061 * 124.07542 * 0.44772 * 21 20 19 23 23 C 1.53007 * 110.15464 * 342.90200 * 22 21 20 24 24 H 1.09002 * 109.46977 * 78.99902 * 1 2 3 25 25 H 1.08997 * 109.47301 * 199.00198 * 1 2 3 26 26 H 1.09003 * 109.46902 * 319.00138 * 1 2 3 27 27 H 0.96996 * 119.99731 * 180.02562 * 9 8 6 28 28 H 1.09009 * 109.46813 * 155.13908 * 14 5 3 29 29 H 1.09000 * 109.46977 * 35.14213 * 14 5 3 30 30 H 1.08996 * 109.47011 * 60.00116 * 15 14 5 31 31 H 1.08997 * 109.47010 * 299.99967 * 15 14 5 32 32 H 0.96697 * 117.00197 * 179.97438 * 18 16 15 33 33 H 1.08990 * 109.35882 * 289.54186 * 19 2 1 34 34 H 1.08998 * 109.35514 * 49.26735 * 19 2 1 35 35 H 1.08008 * 117.95868 * 162.89498 * 20 19 2 36 36 H 1.08000 * 117.95710 * 180.47148 * 21 20 19 37 37 H 1.08997 * 109.36382 * 103.09821 * 22 21 20 38 38 H 1.09002 * 109.35565 * 222.68793 * 22 21 20 39 39 H 1.08997 * 109.62994 * 289.72924 * 23 22 21 40 40 H 1.09007 * 109.64939 * 169.10215 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4194 0.0000 4 8 2.6096 1.8588 0.9745 5 7 1.8528 2.2005 -1.0829 6 6 1.1148 1.7403 -2.1427 7 1 0.1324 1.3236 -1.9763 8 6 1.6307 1.8101 -3.4310 9 7 0.8214 1.7737 -4.4657 10 14 3.4746 1.9559 -3.6920 11 1 4.0559 0.6029 -3.8836 12 1 3.7402 2.7837 -4.8959 13 1 4.0936 2.5970 -2.5041 14 6 2.4416 3.5412 -1.1274 15 6 1.5063 4.5323 -0.4318 16 6 2.1118 5.9116 -0.4782 17 8 3.1818 6.0840 -1.0122 18 8 1.4628 6.9483 0.0748 19 6 2.0444 -0.7297 1.2428 20 6 3.5221 -0.9654 1.1291 21 6 4.1844 -0.8955 0.0192 22 6 3.5689 -0.5595 -1.3075 23 6 2.0501 -0.7331 -1.2430 24 1 -0.3633 0.1961 -1.0088 25 1 -0.3634 -0.9716 0.3346 26 1 -0.3633 0.7756 0.6742 27 1 1.1816 1.8220 -5.3650 28 1 2.5825 3.8418 -2.1656 29 1 3.4051 3.5319 -0.6178 30 1 1.3654 4.2316 0.6063 31 1 0.5428 4.5415 -0.9414 32 1 1.8909 7.8137 0.0205 33 1 1.8419 -0.1248 2.1266 34 1 1.5338 -1.6881 1.3362 35 1 4.0668 -1.2089 2.0295 36 1 5.2461 -1.0915 0.0499 37 1 3.8037 0.4736 -1.5635 38 1 3.9761 -1.2207 -2.0724 39 1 1.8053 -1.7928 -1.1725 40 1 1.5943 -0.3072 -2.1370 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604484836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:55 Heat of formation + Delta-G solvation = -107.745372 kcal Electronic energy + Delta-G solvation = -23974.730482 eV Core-core repulsion = 20561.983899 eV Total energy + Delta-G solvation = -3412.746583 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.21944 -39.76095 -36.85343 -35.88312 -35.08236 -32.64000 -32.16331 -30.72172 -29.87157 -26.06826 -25.10265 -24.76488 -22.47625 -21.60494 -20.63740 -19.05413 -17.99499 -17.68903 -16.45348 -16.32022 -15.78108 -15.54065 -15.21242 -14.73541 -14.22175 -13.86850 -13.47508 -13.34709 -12.94856 -12.81529 -12.48424 -12.41368 -12.13387 -12.00216 -11.81029 -11.53645 -11.33472 -11.27907 -11.24661 -10.84223 -10.72674 -10.53086 -10.29226 -10.18654 -9.84992 -9.66590 -9.53530 -8.99275 -8.48102 -8.39543 -7.66595 -6.54330 -4.24485 2.53121 2.86112 3.10439 3.23314 3.27706 3.32306 3.75155 4.12341 4.45063 4.82935 5.24709 5.31470 5.41362 5.51228 5.60144 5.76440 5.81345 5.92757 5.96814 6.08026 6.09636 6.12908 6.24886 6.29260 6.38423 6.46001 6.49537 6.56907 6.60905 6.70152 6.76902 6.82438 6.91426 7.14465 7.32130 7.37119 7.51738 8.06063 8.17062 8.24164 8.93041 9.28473 9.65961 10.53253 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.008414 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.996954 B = 3327.029759 C = 4076.454815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.056 4.056 3 C 0.506 3.494 4 O -0.587 6.587 5 N -0.470 5.470 6 C -0.349 4.349 7 H 0.111 0.889 8 C 0.079 3.921 9 N -0.854 5.854 10 Si 0.849 3.151 11 H -0.269 1.269 12 H -0.287 1.287 13 H -0.251 1.251 14 C 0.128 3.872 15 C -0.125 4.125 16 C 0.484 3.516 17 O -0.521 6.521 18 O -0.521 6.521 19 C -0.068 4.068 20 C -0.140 4.140 21 C -0.160 4.160 22 C -0.095 4.095 23 C -0.115 4.115 24 H 0.084 0.916 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.276 0.724 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.402 0.598 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.032 -0.794 5.886 5.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.059 4.059 3 C 0.296 3.704 4 O -0.470 6.470 5 N -0.191 5.191 6 C -0.476 4.476 7 H 0.128 0.872 8 C -0.130 4.130 9 N -0.488 5.488 10 Si 0.675 3.325 11 H -0.195 1.195 12 H -0.214 1.214 13 H -0.175 1.175 14 C 0.005 3.995 15 C -0.164 4.164 16 C 0.327 3.673 17 O -0.409 6.409 18 O -0.333 6.333 19 C -0.105 4.105 20 C -0.158 4.158 21 C -0.179 4.179 22 C -0.131 4.131 23 C -0.152 4.152 24 H 0.103 0.897 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.260 0.740 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.326 -0.910 6.013 6.090 hybrid contribution 1.390 0.767 -0.431 1.645 sum 1.715 -0.143 5.581 5.840 Atomic orbital electron populations 1.21923 0.93291 1.00617 1.03772 1.20434 0.96351 0.92943 0.96185 1.20507 0.79573 0.86969 0.83373 1.90532 1.45693 1.75524 1.35290 1.43593 1.48646 1.10224 1.16656 1.19136 1.00522 1.44002 0.83929 0.87166 1.25495 0.97715 0.94304 0.95519 1.69768 1.35277 1.44572 0.99156 0.87399 0.87006 0.79175 0.78907 1.19459 1.21354 1.17528 1.21440 0.94952 0.83096 1.00053 1.21849 1.02534 0.86841 1.05172 1.23811 0.82845 0.87317 0.73354 1.90692 1.22584 1.85542 1.42095 1.84589 1.53975 1.20421 1.74291 1.20368 0.93045 0.99048 0.98044 1.21838 0.96332 1.00632 0.96983 1.21993 0.98765 1.01761 0.95343 1.20541 0.96548 1.01436 0.94606 1.21892 0.94530 0.98722 1.00058 0.89703 0.93121 0.93341 0.91416 0.90640 0.91281 0.87630 0.87020 0.73990 0.90706 0.91295 0.88875 0.89086 0.91069 0.91946 0.92879 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.24 37.16 0.31 -2.04 16 2 C -0.06 -1.06 0.50 -155.44 -0.08 -1.13 16 3 C 0.51 11.03 4.59 -10.98 -0.05 10.98 16 4 O -0.59 -13.98 15.03 5.55 0.08 -13.90 16 5 N -0.47 -10.44 1.69 -114.81 -0.19 -10.64 16 6 C -0.35 -8.09 6.00 -14.93 -0.09 -8.18 16 7 H 0.11 2.62 5.17 -52.48 -0.27 2.35 16 8 C 0.08 1.92 4.61 -17.47 -0.08 1.84 16 9 N -0.85 -21.92 13.96 55.50 0.77 -21.15 16 10 Si 0.85 19.63 23.24 -169.99 -3.95 15.68 16 11 H -0.27 -6.05 7.05 56.52 0.40 -5.66 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.25 -5.92 5.49 56.52 0.31 -5.61 16 14 C 0.13 2.80 2.63 -4.04 -0.01 2.79 16 15 C -0.13 -2.30 6.10 -27.88 -0.17 -2.47 16 16 C 0.48 8.40 8.33 36.01 0.30 8.70 16 17 O -0.52 -10.51 16.74 -18.75 -0.31 -10.82 16 18 O -0.52 -7.06 13.42 -39.26 -0.53 -7.59 16 19 C -0.07 -1.15 4.53 -28.17 -0.13 -1.28 16 20 C -0.14 -2.42 9.13 -35.90 -0.33 -2.74 16 21 C -0.16 -2.89 9.61 -35.90 -0.35 -3.23 16 22 C -0.09 -1.84 5.00 -28.19 -0.14 -1.98 16 23 C -0.11 -2.17 4.42 -26.52 -0.12 -2.29 16 24 H 0.08 1.53 5.24 -51.93 -0.27 1.26 16 25 H 0.05 0.72 7.83 -51.93 -0.41 0.31 16 26 H 0.05 0.81 8.00 -51.93 -0.42 0.40 16 27 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.08 1.72 5.31 -51.92 -0.28 1.45 16 29 H 0.07 1.60 7.50 -51.93 -0.39 1.21 16 30 H 0.11 1.92 8.08 -51.93 -0.42 1.50 16 31 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 32 H 0.40 3.52 9.10 45.56 0.41 3.93 16 33 H 0.07 1.31 7.64 -51.93 -0.40 0.92 16 34 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 35 H 0.09 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.09 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.07 1.56 4.09 -51.93 -0.21 1.35 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 40 H 0.12 2.44 4.86 -51.93 -0.25 2.19 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -28.72 306.98 -5.08 -33.81 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.65 Total: 11.02 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.93 Total: -1.04 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.58 Total: -31.78 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.76 Total: -32.31 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -3.95 Total: 15.68 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.72 -5.08 -33.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604484836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.937 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds