Wall clock time and date at job start Tue Mar 31 2020 05:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.81031 * 2 1 4 4 O 1.21294 * 119.99694 * 122.51747 * 3 2 1 5 5 N 1.34773 * 120.00009 * 302.51434 * 3 2 1 6 6 C 1.37098 * 119.99571 * 185.45930 * 5 3 2 7 7 H 1.08000 * 119.99724 * 213.29009 * 6 5 3 8 8 C 1.38948 * 120.00511 * 33.28866 * 6 5 3 9 9 N 1.31414 * 119.99758 * 19.27451 * 8 6 5 10 10 Si 1.86795 * 120.00230 * 199.27795 * 8 6 5 11 11 H 1.48504 * 109.47001 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47001 * 119.99667 * 10 8 6 13 13 H 1.48494 * 109.47213 * 239.99846 * 10 8 6 14 14 C 1.46493 * 119.99908 * 5.45864 * 5 3 2 15 15 C 1.53001 * 109.47102 * 97.42239 * 14 5 3 16 16 C 1.50699 * 109.47115 * 180.02562 * 15 14 5 17 17 O 1.20834 * 120.00193 * 359.97438 * 16 15 14 18 18 O 1.34229 * 120.00047 * 179.97438 * 16 15 14 19 19 C 1.53027 * 109.64413 * 239.47547 * 2 1 3 20 20 C 1.50070 * 110.03317 * 289.68181 * 19 2 1 21 21 C 1.29442 * 124.07581 * 342.91605 * 20 19 2 22 22 C 1.50063 * 124.07713 * 0.48932 * 21 20 19 23 23 C 1.53029 * 110.14827 * 342.87212 * 22 21 20 24 24 H 1.08997 * 109.47176 * 187.26588 * 1 2 3 25 25 H 1.09003 * 109.47455 * 307.26684 * 1 2 3 26 26 H 1.09002 * 109.47513 * 67.26817 * 1 2 3 27 27 H 0.96996 * 120.00005 * 184.95875 * 9 8 6 28 28 H 1.09007 * 109.46659 * 217.41762 * 14 5 3 29 29 H 1.08994 * 109.47336 * 337.41443 * 14 5 3 30 30 H 1.08999 * 109.46753 * 299.99575 * 15 14 5 31 31 H 1.08994 * 109.47288 * 60.00085 * 15 14 5 32 32 H 0.96706 * 116.99847 * 179.97438 * 18 16 15 33 33 H 1.09000 * 109.35719 * 169.54549 * 19 2 1 34 34 H 1.08999 * 109.35369 * 49.81707 * 19 2 1 35 35 H 1.07997 * 117.95696 * 162.93629 * 20 19 2 36 36 H 1.07998 * 117.95857 * 180.47440 * 21 20 19 37 37 H 1.08993 * 109.35821 * 103.07806 * 22 21 20 38 38 H 1.09001 * 109.36228 * 222.80492 * 22 21 20 39 39 H 1.08997 * 109.64206 * 169.12360 * 23 22 21 40 40 H 1.09005 * 109.63925 * 289.54089 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4179 0.0000 4 8 2.7775 1.7970 0.8858 5 7 1.6788 2.2645 -0.9842 6 6 2.2302 3.5181 -1.0471 7 1 1.6447 4.3477 -1.4152 8 6 3.5422 3.7215 -0.6374 9 7 4.3694 2.7039 -0.5528 10 14 4.1303 5.4414 -0.2067 11 1 3.0138 6.4047 -0.3823 12 1 4.5892 5.4684 1.2055 13 1 5.2550 5.8182 -1.1000 14 6 0.6964 1.8451 -1.9867 15 6 -0.6865 2.3705 -1.5965 16 6 -1.6973 1.9385 -2.6275 17 8 -1.3473 1.2786 -3.5772 18 8 -2.9863 2.2869 -2.4907 19 6 2.0444 -0.7320 -1.2415 20 6 1.7700 -2.2025 -1.1218 21 6 1.4817 -2.7983 -0.0094 22 6 1.3711 -2.1001 1.3143 23 6 2.0448 -0.7279 1.2443 24 1 -0.3633 -1.0194 0.1300 25 1 -0.3634 0.6223 0.8178 26 1 -0.3634 0.3971 -0.9478 27 1 5.2631 2.8334 -0.1987 28 1 0.9765 2.2474 -2.9603 29 1 0.6708 0.7566 -2.0372 30 1 -0.9665 1.9682 -0.6229 31 1 -0.6608 3.4589 -1.5462 32 1 -3.5974 1.9869 -3.1775 33 1 3.1183 -0.5714 -1.3365 34 1 1.5409 -0.3413 -2.1257 35 1 1.8163 -2.8009 -2.0196 36 1 1.3097 -3.8642 -0.0356 37 1 0.3190 -1.9735 1.5692 38 1 1.8590 -2.7011 2.0817 39 1 1.7965 -0.1519 2.1358 40 1 3.1256 -0.8532 1.1783 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604484837.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:03 Heat of formation + Delta-G solvation = -79.938201 kcal Electronic energy + Delta-G solvation = -23847.101733 eV Core-core repulsion = 20435.560959 eV Total energy + Delta-G solvation = -3411.540774 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.39900 -39.62160 -37.05944 -36.04721 -34.64723 -32.70182 -31.13382 -30.44140 -30.06482 -26.59326 -25.18261 -24.17502 -22.84531 -21.49930 -20.67081 -19.10722 -17.96361 -17.04142 -16.54478 -16.53552 -15.81893 -15.46660 -14.82902 -14.75313 -14.33687 -13.69101 -13.57822 -13.31098 -13.10070 -12.93798 -12.67709 -12.40801 -12.02906 -11.70799 -11.41114 -11.40522 -11.21925 -11.10180 -10.93038 -10.86973 -10.55554 -10.46445 -10.35845 -10.17924 -10.16449 -9.82648 -9.53215 -8.88590 -8.59320 -7.91621 -7.03409 -6.03023 -3.78409 2.39517 2.62442 3.20800 3.34498 3.42759 3.44379 4.29095 4.43526 4.90836 5.14159 5.17475 5.23016 5.36976 5.42001 5.51021 5.60578 5.62749 5.73072 5.80842 5.87286 5.94681 6.00012 6.05292 6.16890 6.22294 6.34201 6.38164 6.42813 6.52600 6.57289 6.63522 6.77036 6.80250 6.96765 7.06391 7.30593 7.61422 8.04480 8.24533 9.08568 9.23068 9.71220 10.38273 11.02062 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011999 B = 0.008871 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.874851 B = 3155.594262 C = 4913.651926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.070 4.070 3 C 0.477 3.523 4 O -0.520 6.520 5 N -0.454 5.454 6 C -0.346 4.346 7 H 0.080 0.920 8 C 0.062 3.938 9 N -0.816 5.816 10 Si 0.906 3.094 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.288 1.288 14 C 0.099 3.901 15 C -0.142 4.142 16 C 0.482 3.518 17 O -0.518 6.518 18 O -0.521 6.521 19 C -0.088 4.088 20 C -0.142 4.142 21 C -0.167 4.167 22 C -0.091 4.091 23 C -0.088 4.088 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.262 0.738 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.403 0.597 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 -6.846 -1.314 12.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.074 4.074 3 C 0.264 3.736 4 O -0.396 6.396 5 N -0.175 5.175 6 C -0.472 4.472 7 H 0.098 0.902 8 C -0.149 4.149 9 N -0.451 5.451 10 Si 0.733 3.267 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.214 1.214 14 C -0.026 4.026 15 C -0.181 4.181 16 C 0.324 3.676 17 O -0.406 6.406 18 O -0.333 6.333 19 C -0.125 4.125 20 C -0.160 4.160 21 C -0.185 4.185 22 C -0.127 4.127 23 C -0.126 4.126 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.261 0.739 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.536 -6.738 -0.807 11.704 hybrid contribution -0.092 0.529 -0.389 0.663 sum -9.628 -6.209 -1.196 11.519 Atomic orbital electron populations 1.22575 0.94924 1.01995 1.02546 1.20624 0.95416 0.95239 0.96097 1.19524 0.84973 0.85866 0.83196 1.90509 1.36015 1.77011 1.36034 1.43249 1.37751 1.14257 1.22265 1.19081 0.94993 0.84508 1.48624 0.90212 1.24992 0.94981 0.97582 0.97340 1.69946 1.05777 1.31345 1.38008 0.86248 0.78426 0.83744 0.78254 1.19766 1.20875 1.21423 1.21811 0.86274 1.00570 0.93924 1.22286 0.93270 1.05053 0.97442 1.23819 0.81728 0.75869 0.86161 1.90702 1.80262 1.37084 1.32586 1.84596 1.20410 1.73916 1.54367 1.20753 1.02494 0.91536 0.97718 1.22128 0.99669 0.96670 0.97513 1.21962 1.02754 0.98839 0.94907 1.20535 1.00751 0.96385 0.95074 1.21267 1.00378 0.93669 0.97242 0.92198 0.92593 0.90944 0.92775 0.91028 0.88921 0.87102 0.87244 0.73880 0.89829 0.89988 0.88411 0.88723 0.91157 0.91753 0.91410 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 6.35 37.16 0.24 -2.39 16 2 C -0.07 -1.34 0.49 -155.61 -0.08 -1.42 16 3 C 0.48 11.66 5.66 -10.98 -0.06 11.60 16 4 O -0.52 -14.97 12.94 5.55 0.07 -14.89 16 5 N -0.45 -10.85 2.59 -114.81 -0.30 -11.14 16 6 C -0.35 -9.20 9.36 -14.93 -0.14 -9.34 16 7 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 8 C 0.06 1.71 4.39 -17.47 -0.08 1.63 16 9 N -0.82 -23.94 10.92 55.50 0.61 -23.33 16 10 Si 0.91 21.72 29.60 -169.99 -5.03 16.68 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 C 0.10 1.91 3.80 -4.04 -0.02 1.89 16 15 C -0.14 -2.26 5.11 -27.88 -0.14 -2.40 16 16 C 0.48 6.98 8.12 36.01 0.29 7.27 16 17 O -0.52 -8.75 16.74 -18.76 -0.31 -9.07 16 18 O -0.52 -5.91 13.42 -39.26 -0.53 -6.44 16 19 C -0.09 -1.61 4.58 -28.17 -0.13 -1.73 16 20 C -0.14 -2.15 9.48 -35.90 -0.34 -2.49 16 21 C -0.17 -2.33 9.19 -35.90 -0.33 -2.66 16 22 C -0.09 -1.29 5.48 -28.18 -0.15 -1.45 16 23 C -0.09 -1.60 4.28 -26.68 -0.11 -1.72 16 24 H 0.06 0.86 5.46 -51.93 -0.28 0.57 16 25 H 0.06 0.89 7.73 -51.93 -0.40 0.49 16 26 H 0.07 1.14 3.00 -51.93 -0.16 0.98 16 27 H 0.26 7.46 8.32 -40.82 -0.34 7.12 16 28 H 0.07 1.44 8.06 -51.92 -0.42 1.02 16 29 H 0.09 1.70 2.32 -51.93 -0.12 1.58 16 30 H 0.11 1.69 5.64 -51.93 -0.29 1.39 16 31 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 32 H 0.40 2.70 9.10 45.56 0.41 3.12 16 33 H 0.08 1.74 8.10 -51.93 -0.42 1.32 16 34 H 0.08 1.47 5.19 -51.93 -0.27 1.20 16 35 H 0.10 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.09 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.07 0.92 6.76 -51.93 -0.35 0.57 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 40 H 0.07 1.36 8.13 -51.93 -0.42 0.93 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -33.21 309.86 -6.25 -39.46 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.37 Total: 7.25 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.05 Total: -3.19 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.31 Total: -34.47 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.77 Total: -30.40 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.21 -6.25 -39.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604484837.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.477 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds