Wall clock time and date at job start Tue Mar 31 2020 07:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.76907 * 2 1 4 4 C 1.52870 * 109.62034 * 239.53934 * 2 1 3 5 5 C 1.52718 * 110.15489 * 185.75291 * 4 2 1 6 6 H 1.09000 * 115.39034 * 231.21578 * 5 4 2 7 7 C 1.53645 * 115.14697 * 89.81249 * 5 4 2 8 8 C 1.52062 * 120.51792 * 21.47596 * 5 4 2 9 9 H 1.09003 * 115.92841 * 209.63576 * 8 5 4 10 10 C 1.52075 * 120.02601 * 353.60484 * 8 5 4 11 11 C 1.53304 * 109.61531 * 120.45331 * 2 1 3 12 12 H 1.08997 * 109.62061 * 74.43667 * 11 2 1 13 13 C 1.50707 * 109.61463 * 313.90191 * 11 2 1 14 14 O 1.21286 * 119.99987 * 324.06469 * 13 11 2 15 15 N 1.34776 * 119.99481 * 144.06854 * 13 11 2 16 16 C 1.37106 * 119.99362 * 184.61048 * 15 13 11 17 17 H 1.07995 * 120.00419 * 345.90168 * 16 15 13 18 18 C 1.38953 * 119.99549 * 165.89772 * 16 15 13 19 19 N 1.31411 * 120.00033 * 359.61012 * 18 16 15 20 20 Si 1.86795 * 119.99573 * 179.60378 * 18 16 15 21 21 H 1.48497 * 109.47174 * 90.00368 * 20 18 16 22 22 H 1.48503 * 109.47148 * 209.99965 * 20 18 16 23 23 H 1.48503 * 109.47367 * 330.00209 * 20 18 16 24 24 C 1.46502 * 120.00525 * 4.61241 * 15 13 11 25 25 C 1.50696 * 109.46748 * 263.48054 * 24 15 13 26 26 O 1.20826 * 120.00447 * 359.97438 * 25 24 15 27 27 O 1.34233 * 119.99881 * 180.02562 * 25 24 15 28 28 H 1.08991 * 109.47452 * 177.72767 * 1 2 3 29 29 H 1.08999 * 109.47165 * 297.73408 * 1 2 3 30 30 H 1.09008 * 109.46808 * 57.73196 * 1 2 3 31 31 H 1.09001 * 109.35764 * 65.54809 * 4 2 1 32 32 H 1.08996 * 109.35985 * 305.96639 * 4 2 1 33 33 H 1.08993 * 117.54074 * 140.55170 * 7 5 4 34 34 H 1.09003 * 117.54063 * 355.30502 * 7 5 4 35 35 H 1.09004 * 109.26722 * 141.96483 * 10 8 5 36 36 H 1.08992 * 109.26731 * 261.43879 * 10 8 5 37 37 H 0.97001 * 119.99826 * 180.02562 * 19 18 16 38 38 H 1.08995 * 109.46528 * 23.47974 * 24 15 13 39 39 H 1.08998 * 109.46875 * 143.47805 * 24 15 13 40 40 H 0.96699 * 117.00188 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8987 1.0258 0.0000 4 6 2.0433 -0.7300 -1.2412 5 6 3.5637 -0.8623 -1.1827 6 1 4.0967 -0.5255 -2.0719 7 6 4.0823 -2.1332 -0.4925 8 6 4.2965 -0.7674 0.1463 9 1 5.3127 -0.3755 0.1033 10 6 3.5361 -0.3952 1.4096 11 6 2.0447 -0.7319 1.2449 12 1 1.9081 -1.8061 1.1205 13 6 1.2872 -0.2592 2.4590 14 8 0.9454 0.9012 2.5467 15 7 0.9898 -1.1259 3.4473 16 6 0.2200 -0.7197 4.5066 17 1 0.0418 0.3325 4.6726 18 6 -0.3309 -1.6618 5.3666 19 7 -0.1205 -2.9424 5.1602 20 14 -1.3705 -1.1078 6.8163 21 1 -2.7934 -1.0205 6.4004 22 1 -1.2379 -2.0881 7.9239 23 1 -0.9068 0.2256 7.2772 24 6 1.4891 -2.5021 3.3897 25 6 0.4233 -3.3993 2.8151 26 8 -0.6438 -2.9369 2.4877 27 8 0.6593 -4.7125 2.6679 28 1 -0.3634 -1.0267 -0.0407 29 1 -0.3633 0.4782 0.9096 30 1 -0.3633 0.5487 -0.8690 31 1 1.7637 -0.1680 -2.1323 32 1 1.5958 -1.7227 -1.2874 33 1 4.9500 -2.6263 -0.9307 34 1 3.3464 -2.7941 -0.0344 35 1 3.9229 -0.9765 2.2467 36 1 3.6763 0.6661 1.6142 37 1 -0.5054 -3.6001 5.7604 38 1 2.3761 -2.5405 2.7575 39 1 1.7442 -2.8383 4.3946 40 1 -0.0544 -5.2477 2.2946 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604688674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:10 Heat of formation + Delta-G solvation = -97.715031 kcal Electronic energy + Delta-G solvation = -24070.881200 eV Core-core repulsion = 20658.569566 eV Total energy + Delta-G solvation = -3412.311635 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.20129 -38.93994 -37.74963 -35.28704 -34.43670 -33.56203 -31.88132 -30.74956 -27.66867 -26.89515 -25.57198 -23.89405 -21.37840 -21.03733 -20.89152 -19.15120 -18.00376 -17.07379 -16.91434 -16.39518 -15.65164 -15.43471 -14.47687 -14.40181 -14.31752 -14.07548 -13.83985 -13.50337 -12.96684 -12.62613 -12.30722 -12.04412 -11.95213 -11.80471 -11.71767 -11.23400 -11.15749 -11.01878 -10.86490 -10.64216 -10.42343 -10.40434 -10.27504 -10.16983 -10.15353 -9.54917 -9.47028 -9.38269 -9.02888 -8.38749 -7.93901 -6.39506 -3.93179 3.14601 3.24249 3.28621 3.55047 3.80260 3.86572 4.07061 4.30872 4.72509 4.78406 4.91760 5.04922 5.12170 5.19496 5.35342 5.47795 5.52862 5.73614 5.77993 5.82612 5.94083 5.97144 6.08195 6.09487 6.15099 6.25058 6.32218 6.38085 6.44979 6.48185 6.58493 6.62691 6.82975 6.87456 7.03719 7.50613 7.65615 7.97633 8.37702 9.09267 9.19238 9.33371 9.84443 10.64409 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.006712 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.885204 B = 4170.853001 C = 4610.571743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.065 4.065 3 H 0.076 0.924 4 C -0.085 4.085 5 C -0.147 4.147 6 H 0.099 0.901 7 C -0.187 4.187 8 C -0.134 4.134 9 H 0.097 0.903 10 C -0.077 4.077 11 C -0.099 4.099 12 H 0.077 0.923 13 C 0.471 3.529 14 O -0.575 6.575 15 N -0.437 5.437 16 C -0.284 4.284 17 H 0.107 0.893 18 C 0.026 3.974 19 N -0.904 5.904 20 Si 0.940 3.060 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.151 3.849 25 C 0.500 3.500 26 O -0.519 6.519 27 O -0.536 6.536 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.271 0.729 38 H 0.068 0.932 39 H 0.137 0.863 40 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.559 -2.334 -8.505 11.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.084 4.084 3 H 0.094 0.906 4 C -0.122 4.122 5 C -0.166 4.166 6 H 0.117 0.883 7 C -0.224 4.224 8 C -0.152 4.152 9 H 0.115 0.885 10 C -0.115 4.115 11 C -0.121 4.121 12 H 0.095 0.905 13 C 0.260 3.740 14 O -0.458 6.458 15 N -0.157 5.157 16 C -0.411 4.411 17 H 0.125 0.875 18 C -0.172 4.172 19 N -0.548 5.548 20 Si 0.767 3.233 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.195 1.195 24 C 0.025 3.975 25 C 0.341 3.659 26 O -0.405 6.405 27 O -0.347 6.347 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.154 0.846 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 7.339 -1.526 -8.239 11.139 hybrid contribution -1.108 -0.622 0.485 1.360 sum 6.231 -2.147 -7.754 10.176 Atomic orbital electron populations 1.21943 0.94743 1.01607 1.02739 1.20878 0.95963 0.99265 0.92251 0.90561 1.21162 0.92255 1.00674 0.98126 1.22242 0.95975 1.02280 0.96067 0.88305 1.23164 1.03465 0.90876 1.04866 1.21804 0.99615 1.00056 0.93719 0.88454 1.20967 0.92803 1.02123 0.95628 1.21532 0.95183 1.00504 0.94835 0.90474 1.19923 0.84050 0.86648 0.83341 1.90501 1.57883 1.18057 1.79405 1.43491 1.45724 1.07198 1.19260 1.19823 1.24798 0.94751 1.01761 0.87483 1.25197 0.97380 0.94708 0.99944 1.69382 1.46176 1.00411 1.38807 0.85691 0.79867 0.78274 0.79438 1.20441 1.20907 1.19451 1.20881 0.90861 0.81995 1.03781 1.23569 0.89846 0.80027 0.72494 1.90579 1.26292 1.75638 1.48020 1.84525 1.48421 1.22830 1.78923 0.93282 0.90240 0.93700 0.91738 0.91818 0.89269 0.88628 0.91465 0.90458 0.91766 0.91460 0.84557 0.75667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.74 37.16 0.32 -2.57 16 2 C -0.06 -1.11 2.05 -90.53 -0.19 -1.30 16 3 H 0.08 1.35 8.02 -51.93 -0.42 0.93 16 4 C -0.08 -1.17 5.10 -26.94 -0.14 -1.31 16 5 C -0.15 -1.82 6.24 -90.91 -0.57 -2.39 16 6 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 7 C -0.19 -2.25 9.60 -26.75 -0.26 -2.51 16 8 C -0.13 -1.72 6.01 -91.93 -0.55 -2.27 16 9 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 10 C -0.08 -1.22 5.18 -26.79 -0.14 -1.35 16 11 C -0.10 -1.83 1.16 -91.20 -0.11 -1.93 16 12 H 0.08 1.43 5.05 -51.93 -0.26 1.16 16 13 C 0.47 11.14 5.51 -10.98 -0.06 11.08 16 14 O -0.58 -15.29 14.60 5.55 0.08 -15.21 16 15 N -0.44 -10.92 2.18 -116.10 -0.25 -11.17 16 16 C -0.28 -7.78 9.31 -14.93 -0.14 -7.92 16 17 H 0.11 3.06 7.23 -52.49 -0.38 2.68 16 18 C 0.03 0.69 5.26 -17.47 -0.09 0.60 16 19 N -0.90 -23.33 7.74 55.50 0.43 -22.90 16 20 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 24 C 0.15 3.34 4.91 -5.19 -0.03 3.31 16 25 C 0.50 11.33 5.78 36.00 0.21 11.54 16 26 O -0.52 -13.68 16.54 -18.75 -0.31 -13.99 16 27 O -0.54 -10.03 13.42 -39.27 -0.53 -10.56 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.81 5.80 -51.93 -0.30 1.51 16 30 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.89 8.03 -51.93 -0.42 0.48 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.25 7.14 -51.93 -0.37 0.88 16 35 H 0.07 1.03 7.69 -51.93 -0.40 0.63 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.07 1.25 5.77 -51.93 -0.30 0.96 16 39 H 0.14 3.17 6.37 -51.93 -0.33 2.83 16 40 H 0.39 5.68 9.10 45.56 0.41 6.09 16 LS Contribution 315.69 15.07 4.76 4.76 Total: -1.00 -31.49 315.69 -7.43 -38.92 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -4.86 Total: 11.06 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.73 Total: 2.99 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.18 Total: -34.08 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.76 Total: -39.76 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.49 -7.43 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604688674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.799 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds