Wall clock time and date at job start Tue Mar 31 2020 07:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 115.55829 * 2 1 4 4 C 1.53073 * 117.49725 * 214.29812 * 2 1 3 5 5 C 1.52999 * 117.49932 * 145.69413 * 2 1 3 6 6 C 1.50698 * 117.49908 * 359.97438 * 5 2 1 7 7 O 1.20830 * 119.99674 * 327.57378 * 6 5 2 8 8 O 1.34224 * 119.99885 * 147.57709 * 6 5 2 9 9 C 1.50706 * 117.49776 * 214.98133 * 5 2 1 10 10 O 1.21283 * 119.99722 * 40.34654 * 9 5 2 11 11 N 1.34772 * 119.99716 * 220.35226 * 9 5 2 12 12 C 1.46926 * 120.63347 * 355.74093 * 11 9 5 13 13 C 1.53194 * 108.89248 * 126.34514 * 12 11 9 14 14 C 1.53354 * 109.14881 * 54.57860 * 13 12 11 15 15 C 1.53041 * 109.60841 * 298.71517 * 14 13 12 16 16 H 1.09008 * 109.52238 * 301.40620 * 15 14 13 17 17 C 1.50702 * 109.49707 * 181.32528 * 15 14 13 18 18 H 1.07995 * 119.99758 * 240.15949 * 17 15 14 19 19 C 1.37878 * 119.99989 * 60.16057 * 17 15 14 20 20 N 1.31518 * 119.99822 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 119.99800 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47325 * 90.00026 * 21 19 17 23 23 H 1.48504 * 109.47012 * 209.99801 * 21 19 17 24 24 H 1.48501 * 109.46849 * 329.99422 * 21 19 17 25 25 C 1.46929 * 120.62867 * 175.77030 * 11 9 5 26 26 H 1.08997 * 109.47550 * 274.30398 * 1 2 3 27 27 H 1.08997 * 109.47159 * 34.31084 * 1 2 3 28 28 H 1.09004 * 109.47073 * 154.30316 * 1 2 3 29 29 H 1.08996 * 117.52043 * 145.03645 * 4 2 1 30 30 H 1.09007 * 117.51217 * 359.97438 * 4 2 1 31 31 H 0.96706 * 116.99940 * 179.97438 * 8 6 5 32 32 H 1.08996 * 109.59068 * 246.20710 * 12 11 9 33 33 H 1.09002 * 109.58265 * 6.49073 * 12 11 9 34 34 H 1.09002 * 109.49746 * 174.65792 * 13 12 11 35 35 H 1.09004 * 109.49983 * 294.75713 * 13 12 11 36 36 H 1.08997 * 109.41838 * 178.67667 * 14 13 12 37 37 H 1.09003 * 109.42772 * 58.75752 * 14 13 12 38 38 H 0.96998 * 119.99723 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.58571 * 353.36636 * 25 11 9 40 40 H 1.09002 * 109.58466 * 113.65298 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2367 -1.1217 -0.7651 5 6 2.2364 -1.1210 0.7649 6 6 1.3720 -2.1404 1.4611 7 8 0.3022 -1.8140 1.9182 8 8 1.7906 -3.4107 1.5735 9 6 3.5293 -0.7812 1.4608 10 8 3.6444 0.2761 2.0437 11 7 4.5574 -1.6521 1.4352 12 6 4.4032 -2.9745 0.8137 13 6 5.5138 -3.1677 -0.2236 14 6 6.8739 -2.9400 0.4473 15 6 6.9504 -1.5073 0.9800 16 1 6.8072 -0.8052 0.1585 17 6 8.2998 -1.2763 1.6098 18 1 8.3697 -1.0068 2.6533 19 6 9.4453 -1.4089 0.8539 20 7 9.3602 -1.7376 -0.4167 21 14 11.1179 -1.1232 1.6348 22 1 11.6318 -2.4026 2.1864 23 1 12.0622 -0.6117 0.6091 24 1 10.9896 -0.1281 2.7296 25 6 5.8538 -1.2975 2.0289 26 1 -0.3634 0.0771 1.0247 27 1 -0.3633 0.8488 -0.5793 28 1 -0.3633 -0.9261 -0.4456 29 1 3.1719 -0.8765 -1.2684 30 1 1.6116 -1.8597 -1.2680 31 1 1.2018 -4.0284 2.0286 32 1 4.4780 -3.7483 1.5777 33 1 3.4312 -3.0370 0.3243 34 1 5.4664 -4.1808 -0.6229 35 1 5.3837 -2.4503 -1.0338 36 1 7.6686 -3.0995 -0.2813 37 1 6.9926 -3.6413 1.2733 38 1 10.1660 -1.8312 -0.9484 39 1 5.8401 -0.2527 2.3390 40 1 6.0458 -1.9329 2.8935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605018491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:28 Heat of formation + Delta-G solvation = -105.875566 kcal Electronic energy + Delta-G solvation = -23280.113572 eV Core-core repulsion = 19867.448070 eV Total energy + Delta-G solvation = -3412.665502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15260 -39.37891 -37.48751 -36.48760 -36.07239 -33.48436 -31.37092 -30.36750 -28.98840 -25.95671 -25.05840 -24.54843 -22.23076 -21.73128 -20.93387 -19.72577 -18.69104 -17.84086 -17.37019 -16.33408 -16.15101 -15.63108 -15.08533 -14.70010 -14.63882 -13.97047 -13.76408 -13.39143 -13.27950 -13.08242 -12.77934 -12.60040 -12.51585 -12.11450 -11.93777 -11.72569 -11.64494 -11.12319 -11.00223 -10.82405 -10.79589 -10.50510 -10.22314 -10.14566 -9.94970 -9.86525 -9.54412 -9.35495 -8.86264 -8.41568 -7.96543 -6.04926 -4.12039 1.87868 2.51440 3.02571 3.27589 3.28156 3.35168 3.38927 3.49084 4.38248 4.40615 4.46596 4.60586 5.02144 5.16241 5.24637 5.32177 5.49953 5.52677 5.69300 5.70426 5.73060 5.91077 5.94975 6.11803 6.15874 6.31324 6.36110 6.37444 6.46431 6.62194 6.77087 6.90488 7.13633 7.29851 7.66028 7.71799 7.84718 7.93024 8.04127 8.32558 8.48846 8.91330 9.53094 11.00600 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030931 B = 0.004571 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.025874 B = 6123.649823 C = 6285.990877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.088 4.088 3 H 0.126 0.874 4 C -0.136 4.136 5 C -0.167 4.167 6 C 0.527 3.473 7 O -0.499 6.499 8 O -0.503 6.503 9 C 0.549 3.451 10 O -0.536 6.536 11 N -0.588 5.588 12 C 0.111 3.889 13 C -0.135 4.135 14 C -0.113 4.113 15 C 0.041 3.959 16 H 0.030 0.970 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.116 3.884 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.409 0.591 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.261 0.739 39 H 0.079 0.921 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.152 -4.280 -2.015 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.107 4.107 3 H 0.144 0.856 4 C -0.174 4.174 5 C -0.172 4.172 6 C 0.368 3.632 7 O -0.386 6.386 8 O -0.315 6.315 9 C 0.334 3.666 10 O -0.413 6.413 11 N -0.319 5.319 12 C -0.012 4.012 13 C -0.174 4.174 14 C -0.151 4.151 15 C 0.022 3.978 16 H 0.048 0.952 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.005 4.005 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.269 0.731 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.987 -3.401 -1.918 15.487 hybrid contribution 0.694 -0.530 0.701 1.119 sum -14.293 -3.931 -1.217 14.874 Atomic orbital electron populations 1.21505 0.91299 1.01710 1.03642 1.22600 0.96242 0.94574 0.97251 0.85563 1.23448 1.04087 1.01358 0.88471 1.21047 0.98068 1.01346 0.96728 1.21688 0.84002 0.81345 0.76150 1.90694 1.22969 1.80194 1.44743 1.84648 1.52939 1.20624 1.73323 1.18824 0.82947 0.84239 0.80602 1.90695 1.82044 1.24581 1.44019 1.48274 1.12164 1.15445 1.56031 1.21862 0.99567 0.83489 0.96248 1.22083 0.97179 1.00389 0.97709 1.21694 0.94612 0.98525 1.00240 1.18971 0.91669 0.93689 0.93441 0.95217 1.21066 0.90384 1.47218 0.96675 0.92458 1.24924 0.99106 0.94909 0.94780 1.69871 1.28550 1.47924 1.06390 0.86576 0.83790 0.78473 0.79077 1.20679 1.21232 1.19848 1.22095 0.80397 1.00921 0.97058 0.90133 0.91659 0.92766 0.86491 0.87182 0.73149 0.91763 0.90003 0.92383 0.92485 0.88649 0.94555 0.92957 0.90293 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 8.60 37.16 0.32 -1.02 16 2 C -0.09 -1.10 5.97 -90.58 -0.54 -1.64 16 3 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 4 C -0.14 -1.54 8.60 -26.69 -0.23 -1.77 16 5 C -0.17 -2.39 1.26 -156.81 -0.20 -2.59 16 6 C 0.53 6.99 7.24 36.00 0.26 7.25 16 7 O -0.50 -7.40 15.02 -18.75 -0.28 -7.69 16 8 O -0.50 -5.12 10.56 -39.24 -0.41 -5.53 16 9 C 0.55 10.14 6.88 -10.98 -0.08 10.06 16 10 O -0.54 -11.76 16.36 5.55 0.09 -11.67 16 11 N -0.59 -10.86 2.97 -172.76 -0.51 -11.37 16 12 C 0.11 1.72 5.11 -3.71 -0.02 1.71 16 13 C -0.14 -2.33 6.11 -26.45 -0.16 -2.49 16 14 C -0.11 -2.46 4.97 -26.53 -0.13 -2.59 16 15 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 16 H 0.03 0.80 8.14 -51.92 -0.42 0.37 16 17 C -0.51 -13.71 8.56 -34.44 -0.29 -14.01 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.47 11.32 55.43 0.63 -23.84 16 21 Si 0.89 20.84 29.54 -169.99 -5.02 15.81 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C 0.12 2.48 5.64 -3.71 -0.02 2.46 16 26 H 0.08 1.01 6.79 -51.93 -0.35 0.65 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.54 7.88 -51.93 -0.41 0.13 16 29 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.11 0.99 8.05 -51.92 -0.42 0.57 16 31 H 0.41 2.21 9.10 45.56 0.41 2.62 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.09 3.94 -51.93 -0.20 0.88 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 2.37 6.05 -51.93 -0.31 2.05 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.08 1.81 7.03 -51.93 -0.37 1.45 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -31.51 321.76 -7.05 -38.56 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.00 Total: 3.08 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.39 Total: -2.21 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.11 Total: -35.22 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.61 Total: -24.89 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.51 -7.05 -38.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605018491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.315 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds