Wall clock time and date at job start Tue Mar 31 2020 07:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 115.55776 * 2 1 4 4 C 1.53007 * 117.49482 * 214.30199 * 2 1 3 5 5 C 1.53001 * 117.49701 * 145.68315 * 2 1 3 6 6 C 1.50695 * 117.50083 * 359.96491 * 5 2 1 7 7 O 1.20828 * 119.99903 * 327.98434 * 6 5 2 8 8 O 1.34234 * 119.99883 * 147.97744 * 6 5 2 9 9 C 1.50705 * 117.49421 * 214.97343 * 5 2 1 10 10 O 1.21279 * 120.00106 * 253.23534 * 9 5 2 11 11 N 1.34777 * 119.99828 * 73.24120 * 9 5 2 12 12 C 1.46931 * 120.62621 * 177.38803 * 11 9 5 13 13 C 1.53195 * 108.77486 * 233.60447 * 12 11 9 14 14 C 1.53035 * 109.31613 * 305.36956 * 13 12 11 15 15 C 1.53043 * 109.53713 * 61.36239 * 14 13 12 16 16 H 1.09003 * 109.50257 * 58.62046 * 15 14 13 17 17 C 1.50700 * 109.49636 * 178.68377 * 15 14 13 18 18 H 1.08006 * 119.99639 * 95.81123 * 17 15 14 19 19 C 1.37873 * 120.00348 * 275.80870 * 17 15 14 20 20 N 1.31518 * 119.99739 * 356.18539 * 19 17 15 21 21 Si 1.86797 * 120.00348 * 176.18381 * 19 17 15 22 22 H 1.48499 * 109.47151 * 60.00021 * 21 19 17 23 23 H 1.48497 * 109.47200 * 300.00223 * 21 19 17 24 24 H 1.48504 * 109.47510 * 180.02562 * 21 19 17 25 25 C 1.46924 * 120.63508 * 357.38843 * 11 9 5 26 26 H 1.09001 * 109.47029 * 274.32558 * 1 2 3 27 27 H 1.09002 * 109.46892 * 34.31989 * 1 2 3 28 28 H 1.08999 * 109.47993 * 154.32684 * 1 2 3 29 29 H 1.08998 * 117.50140 * 145.02054 * 4 2 1 30 30 H 1.08998 * 117.49752 * 359.97438 * 4 2 1 31 31 H 0.96699 * 116.99594 * 180.02562 * 8 6 5 32 32 H 1.09000 * 109.58453 * 113.82077 * 12 11 9 33 33 H 1.08994 * 109.58751 * 353.39684 * 12 11 9 34 34 H 1.08996 * 109.49635 * 185.41162 * 13 12 11 35 35 H 1.09000 * 109.49436 * 65.31878 * 13 12 11 36 36 H 1.08998 * 109.45868 * 301.34519 * 14 13 12 37 37 H 1.08997 * 109.46369 * 181.38110 * 14 13 12 38 38 H 0.96995 * 120.00037 * 6.01269 * 20 19 17 39 39 H 1.09004 * 109.58354 * 6.60386 * 25 11 9 40 40 H 1.09001 * 109.58798 * 246.18094 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2363 -1.1212 -0.7649 5 6 2.2364 -1.1209 0.7651 6 6 1.3720 -2.1400 1.4617 7 8 0.2989 -1.8152 1.9124 8 8 1.7940 -3.4086 1.5814 9 6 3.5293 -0.7809 1.4608 10 8 4.5833 -1.1747 1.0081 11 7 3.5142 -0.0394 2.5862 12 6 4.7608 0.2523 3.3071 13 6 4.5943 -0.1693 4.7705 14 6 3.3554 0.5123 5.3558 15 6 2.1127 0.0682 4.5808 16 1 2.0160 -1.0159 4.6384 17 6 0.8896 0.7148 5.1783 18 1 0.4979 1.6265 4.7519 19 6 0.2706 0.1425 6.2693 20 7 0.7018 -1.0065 6.7421 21 14 -1.1804 0.9990 7.0758 22 1 -2.2748 1.1576 6.0847 23 1 -0.7571 2.3360 7.5640 24 1 -1.6624 0.1845 8.2202 25 6 2.2510 0.4926 3.1153 26 1 -0.3633 0.0775 1.0247 27 1 -0.3633 0.8488 -0.5794 28 1 -0.3635 -0.9262 -0.4452 29 1 3.1714 -0.8755 -1.2683 30 1 1.6110 -1.8589 -1.2677 31 1 1.2048 -4.0262 2.0358 32 1 4.9708 1.3206 3.2563 33 1 5.5821 -0.3055 2.8573 34 1 5.4759 0.1291 5.3376 35 1 4.4745 -1.2513 4.8259 36 1 3.4649 1.5939 5.2774 37 1 3.2485 0.2333 6.4040 38 1 1.5070 -1.4084 6.3803 39 1 1.4164 0.0934 2.5389 40 1 2.2564 1.5806 3.0489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605018492.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:32 Heat of formation + Delta-G solvation = -110.497706 kcal Electronic energy + Delta-G solvation = -23833.826133 eV Core-core repulsion = 20420.960200 eV Total energy + Delta-G solvation = -3412.865933 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02636 -39.32281 -37.46343 -36.70065 -35.69118 -33.56050 -31.86197 -29.99062 -28.97536 -25.91125 -24.70369 -24.46108 -22.61565 -21.48492 -20.82711 -19.80888 -18.91438 -17.76650 -17.19230 -16.68470 -16.12971 -15.71404 -14.85041 -14.60962 -14.35999 -13.96964 -13.73698 -13.54393 -13.31561 -13.08627 -12.78508 -12.65509 -12.38382 -12.24596 -11.82251 -11.61795 -11.55788 -11.30747 -10.94733 -10.84931 -10.45647 -10.41844 -10.35118 -10.12596 -10.02137 -9.92566 -9.75491 -9.40701 -8.57546 -8.36707 -8.10930 -6.38276 -4.10355 2.18052 2.64253 2.98515 3.18344 3.42339 3.43563 3.62009 3.66924 4.42013 4.50500 4.57628 4.70619 5.11886 5.20692 5.28941 5.44134 5.49241 5.55866 5.59786 5.69251 5.80293 5.86455 5.88189 6.00677 6.03385 6.12959 6.28244 6.32515 6.43658 6.54153 6.67478 6.73400 6.82584 6.99974 7.31354 7.50126 7.71641 8.03979 8.13518 8.36195 8.38567 8.82735 9.62073 11.00194 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016390 B = 0.007243 C = 0.005985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.961086 B = 3864.998954 C = 4677.168614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 H 0.121 0.879 4 C -0.124 4.124 5 C -0.162 4.162 6 C 0.520 3.480 7 O -0.476 6.476 8 O -0.510 6.510 9 C 0.556 3.444 10 O -0.543 6.543 11 N -0.596 5.596 12 C 0.115 3.885 13 C -0.137 4.137 14 C -0.111 4.111 15 C 0.026 3.974 16 H 0.031 0.969 17 C -0.591 4.591 18 H 0.050 0.950 19 C 0.024 3.976 20 N -0.909 5.909 21 Si 1.065 2.935 22 H -0.287 1.287 23 H -0.288 1.288 24 H -0.283 1.283 25 C 0.107 3.893 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.412 0.588 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.269 0.731 39 H 0.088 0.912 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 0.794 -11.850 12.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.119 4.119 3 H 0.139 0.861 4 C -0.162 4.162 5 C -0.166 4.166 6 C 0.359 3.641 7 O -0.361 6.361 8 O -0.322 6.322 9 C 0.341 3.659 10 O -0.421 6.421 11 N -0.327 5.327 12 C -0.007 4.007 13 C -0.175 4.175 14 C -0.149 4.149 15 C 0.006 3.994 16 H 0.049 0.951 17 C -0.630 4.630 18 H 0.069 0.931 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.894 3.106 22 H -0.214 1.214 23 H -0.214 1.214 24 H -0.208 1.208 25 C -0.014 4.014 26 H 0.107 0.893 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.271 0.729 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.984 0.794 -10.948 11.155 hybrid contribution 0.844 -0.262 -0.651 1.097 sum 2.828 0.532 -11.599 11.950 Atomic orbital electron populations 1.21564 0.90871 1.01726 1.04460 1.22660 0.96868 0.93947 0.98412 0.86114 1.23307 1.03402 1.00720 0.88724 1.20860 0.97944 1.01220 0.96598 1.21514 0.84500 0.81420 0.76642 1.90802 1.22311 1.79643 1.43306 1.84511 1.53203 1.20918 1.73555 1.18869 0.87896 0.78363 0.80729 1.90649 1.31563 1.54269 1.65605 1.48362 1.10169 1.50378 1.23770 1.21604 0.86236 1.00325 0.92529 1.22016 0.99807 1.01133 0.94560 1.21785 0.93964 0.98746 1.00441 1.19119 0.93914 0.97319 0.89038 0.95057 1.21762 1.12780 1.12117 1.16305 0.93147 1.25767 1.01950 0.95302 0.95027 1.70786 1.23816 1.15589 1.44274 0.83595 0.75396 0.75241 0.76399 1.21360 1.21434 1.20838 1.22319 0.82927 0.97932 0.98223 0.89297 0.91690 0.92634 0.86729 0.87344 0.72870 0.91753 0.89849 0.91924 0.92349 0.93335 0.92402 0.91952 0.89389 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.59 37.15 0.32 -1.33 16 2 C -0.10 -1.32 5.17 -90.62 -0.47 -1.79 16 3 H 0.12 1.48 8.14 -51.93 -0.42 1.05 16 4 C -0.12 -1.54 9.43 -26.73 -0.25 -1.79 16 5 C -0.16 -2.61 1.24 -156.81 -0.19 -2.81 16 6 C 0.52 9.00 6.78 36.00 0.24 9.25 16 7 O -0.48 -9.29 13.83 -18.75 -0.26 -9.54 16 8 O -0.51 -7.81 13.42 -39.27 -0.53 -8.33 16 9 C 0.56 10.35 6.89 -10.98 -0.08 10.27 16 10 O -0.54 -11.06 16.30 5.56 0.09 -10.97 16 11 N -0.60 -11.20 2.97 -172.76 -0.51 -11.71 16 12 C 0.12 1.99 6.43 -3.71 -0.02 1.96 16 13 C -0.14 -2.48 6.08 -26.61 -0.16 -2.64 16 14 C -0.11 -2.39 5.13 -26.69 -0.14 -2.53 16 15 C 0.03 0.61 1.93 -91.65 -0.18 0.43 16 16 H 0.03 0.85 6.76 -51.93 -0.35 0.50 16 17 C -0.59 -15.84 8.32 -34.44 -0.29 -16.12 16 18 H 0.05 1.34 7.81 -52.48 -0.41 0.93 16 19 C 0.02 0.67 5.46 -17.82 -0.10 0.58 16 20 N -0.91 -26.84 13.62 55.43 0.75 -26.08 16 21 Si 1.07 24.72 29.91 -169.99 -5.08 19.64 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.11 2.19 5.35 -3.71 -0.02 2.17 16 26 H 0.09 1.40 6.55 -51.93 -0.34 1.06 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.67 7.87 -51.93 -0.41 0.27 16 29 H 0.11 1.35 8.12 -51.93 -0.42 0.93 16 30 H 0.11 1.15 8.05 -51.93 -0.42 0.73 16 31 H 0.41 4.51 9.10 45.56 0.41 4.92 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.42 7.02 -51.93 -0.36 1.05 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.37 8.12 -51.93 -0.42 0.94 16 38 H 0.27 7.96 6.67 -40.82 -0.27 7.69 16 39 H 0.09 1.82 3.91 -51.93 -0.20 1.62 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 325.13 15.07 4.90 4.90 Total: -1.00 -32.64 325.13 -6.92 -39.56 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.95 Total: 6.90 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -1.33 Total: -4.36 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.24 Total: -37.80 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.70 Total: -28.85 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.64 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.64 -6.92 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605018492.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.935 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds