Wall clock time and date at job start Tue Mar 31 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47112 * 2 1 4 4 O 1.33630 * 125.80996 * 270.24253 * 3 2 1 5 5 C 1.34218 * 110.92528 * 180.20378 * 4 3 2 6 6 C 1.50699 * 125.42492 * 179.85015 * 5 4 3 7 7 N 1.46902 * 109.47426 * 269.69198 * 6 5 4 8 8 C 1.46904 * 110.99737 * 66.04648 * 7 6 5 9 9 C 1.46894 * 110.99995 * 190.00400 * 7 6 5 10 10 H 1.09002 * 109.47104 * 299.99727 * 9 7 6 11 11 C 1.52997 * 109.47515 * 59.99995 * 9 7 6 12 12 C 1.50708 * 109.46991 * 180.02562 * 9 7 6 13 13 H 1.08000 * 119.99723 * 359.97438 * 12 9 7 14 14 C 1.37873 * 119.99930 * 179.97438 * 12 9 7 15 15 N 1.31509 * 120.00195 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99968 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46959 * 89.99935 * 16 14 12 18 18 H 1.48491 * 109.47193 * 210.00326 * 16 14 12 19 19 H 1.48498 * 109.47096 * 330.00479 * 16 14 12 20 20 C 1.34154 * 109.14174 * 359.58447 * 5 4 3 21 21 C 1.36496 * 125.80825 * 89.99892 * 3 2 1 22 22 C 1.47231 * 127.20212 * 0.02562 * 21 3 2 23 23 O 1.21536 * 119.99972 * 359.97354 * 22 21 3 24 24 O 1.34770 * 120.00033 * 179.97438 * 22 21 3 25 25 H 1.08998 * 109.46963 * 300.00472 * 1 2 3 26 26 H 1.09000 * 109.46991 * 59.99695 * 1 2 3 27 27 H 1.08995 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46725 * 240.00275 * 2 1 3 29 29 H 1.08996 * 109.47122 * 119.99814 * 2 1 3 30 30 H 1.08999 * 109.47031 * 149.69062 * 6 5 4 31 31 H 1.09007 * 109.47247 * 29.69491 * 6 5 4 32 32 H 1.09003 * 109.46649 * 183.95663 * 8 7 6 33 33 H 1.08997 * 109.47179 * 303.95694 * 8 7 6 34 34 H 1.09001 * 109.46814 * 63.95866 * 8 7 6 35 35 H 1.09002 * 109.47153 * 59.99762 * 11 9 7 36 36 H 1.09001 * 109.46832 * 299.99953 * 11 9 7 37 37 H 1.09004 * 109.47261 * 179.97438 * 11 9 7 38 38 H 0.97006 * 120.00358 * 179.97438 * 15 14 12 39 39 H 1.08000 * 127.01824 * 180.27612 * 20 5 4 40 40 H 0.96698 * 117.00047 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2886 2.1595 -1.0837 5 6 2.7266 3.3805 -0.7389 6 6 3.1136 4.4736 -1.7014 7 7 4.5451 4.3671 -2.0137 8 6 4.8316 3.1314 -2.7547 9 6 5.0112 5.5461 -2.7556 10 1 4.4552 5.6310 -3.6893 11 6 4.7855 6.8020 -1.9115 12 6 6.4805 5.4008 -3.0579 13 1 7.0146 4.5208 -2.7311 14 6 7.1428 6.3912 -3.7516 15 7 6.4925 7.4630 -4.1491 16 14 8.9641 6.2115 -4.1257 17 1 9.1358 5.5263 -5.4320 18 1 9.5922 7.5557 -4.1855 19 1 9.6121 5.4094 -3.0571 20 6 2.7594 3.4745 0.5989 21 6 2.2985 2.1737 1.1070 22 6 2.1556 1.7680 2.5150 23 8 1.7609 0.6515 2.7886 24 8 2.4624 2.6346 3.5005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.9117 5.4444 -1.2488 31 1 2.5331 4.3726 -2.6185 32 1 5.9067 3.0430 -2.9117 33 1 4.4762 2.2742 -2.1830 34 1 4.3247 3.1604 -3.7192 35 1 5.3415 6.7170 -0.9778 36 1 3.7227 6.9068 -1.6932 37 1 5.1318 7.6768 -2.4619 38 1 6.9586 8.1601 -4.6368 39 1 3.0619 4.3309 1.1833 40 1 2.3522 2.3229 4.4092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605889554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:20 Heat of formation + Delta-G solvation = -77.209798 kcal Electronic energy + Delta-G solvation = -22218.112460 eV Core-core repulsion = 18806.689998 eV Total energy + Delta-G solvation = -3411.422461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.59373 -39.88719 -37.15001 -36.17416 -34.19450 -33.13829 -32.54676 -30.08365 -29.00746 -26.65262 -25.05717 -24.68017 -23.66308 -22.27671 -21.51576 -19.69736 -19.25569 -18.08346 -16.92572 -16.45181 -16.15462 -15.72213 -15.43592 -15.16133 -14.54471 -14.24118 -14.09199 -13.86465 -13.39478 -13.08525 -12.80903 -12.53872 -12.44512 -12.20284 -11.79070 -11.74542 -11.63823 -11.25959 -11.10845 -11.03292 -10.79027 -10.73660 -10.61683 -10.21292 -10.13150 -9.96993 -9.73367 -8.96487 -8.52033 -8.33760 -7.32224 -6.06011 -4.10708 1.13680 2.12368 2.67985 3.06442 3.13058 3.28385 3.35314 3.39598 4.36416 4.42566 4.72379 4.94612 5.04467 5.05621 5.18792 5.26991 5.30009 5.49862 5.63131 5.68257 5.76938 5.86098 5.97454 6.06966 6.07437 6.14396 6.33923 6.40529 6.47601 6.72248 6.75152 6.96760 7.04249 7.19437 7.41409 7.60325 7.77502 7.86714 8.08760 8.23176 8.48260 8.94910 9.54555 11.00837 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026636 B = 0.003752 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.951883 B = 7460.352682 C = 7744.629149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C 0.088 3.912 4 O -0.166 6.166 5 C 0.016 3.984 6 C 0.124 3.876 7 N -0.532 5.532 8 C 0.037 3.963 9 C 0.212 3.788 10 H 0.002 0.998 11 C -0.136 4.136 12 C -0.505 4.505 13 H 0.064 0.936 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.157 4.157 21 C -0.237 4.237 22 C 0.563 3.437 23 O -0.525 6.525 24 O -0.507 6.507 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.015 0.985 35 H 0.037 0.963 36 H 0.009 0.991 37 H 0.088 0.912 38 H 0.261 0.739 39 H 0.162 0.838 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.828 -10.329 9.448 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C 0.034 3.966 4 O -0.062 6.062 5 C -0.032 4.032 6 C -0.004 4.004 7 N -0.257 5.257 8 C -0.111 4.111 9 C 0.107 3.893 10 H 0.020 0.980 11 C -0.194 4.194 12 C -0.543 4.543 13 H 0.082 0.918 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.177 4.177 21 C -0.240 4.240 22 C 0.409 3.591 23 O -0.417 6.417 24 O -0.318 6.318 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.033 0.967 35 H 0.056 0.944 36 H 0.028 0.972 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.179 0.821 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -10.608 -10.378 9.139 17.429 hybrid contribution 0.592 -0.036 -0.197 0.625 sum -10.016 -10.415 8.942 16.993 Atomic orbital electron populations 1.21695 0.93321 1.02586 1.02479 1.20409 0.96971 0.86572 1.05166 1.22733 0.96583 0.94009 0.83262 1.83783 1.64654 1.23348 1.34407 1.22586 1.01075 0.84285 0.95266 1.20752 0.91795 0.92785 0.95112 1.62231 1.10798 1.04774 1.47943 1.22237 1.02644 0.91349 0.94886 1.19309 0.95527 0.84498 0.89968 0.98044 1.21895 0.95946 1.01658 0.99899 1.21120 0.93441 1.05009 1.34730 0.91765 1.24916 0.98395 0.95154 0.95669 1.69881 1.36097 1.08545 1.38691 0.86504 0.84974 0.77368 0.78631 1.20773 1.21218 1.19809 1.22526 1.04523 0.97414 0.93212 1.20032 1.16658 0.97289 0.90029 1.19685 0.72598 0.81544 0.85266 1.90849 1.44787 1.21532 1.84531 1.84625 1.80954 1.46801 1.19424 0.92114 0.92320 0.91323 0.89610 0.87167 0.87280 0.94004 0.90300 0.93916 0.96657 0.94373 0.97231 0.89387 0.92907 0.82070 0.73135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.89 37.16 0.37 -0.99 16 2 C -0.05 -0.59 5.94 -27.88 -0.17 -0.76 16 3 C 0.09 1.23 6.63 -34.94 -0.23 1.00 16 4 O -0.17 -2.61 9.80 7.70 0.08 -2.53 16 5 C 0.02 0.27 5.85 -35.75 -0.21 0.06 16 6 C 0.12 2.19 5.30 -4.98 -0.03 2.16 16 7 N -0.53 -11.22 4.61 -237.72 -1.10 -12.32 16 8 C 0.04 0.74 9.07 60.07 0.54 1.29 16 9 C 0.21 5.18 2.06 -68.87 -0.14 5.04 16 10 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 11 C -0.14 -3.16 8.77 37.16 0.33 -2.84 16 12 C -0.50 -13.48 7.93 -34.44 -0.27 -13.75 16 13 H 0.06 1.72 6.39 -52.49 -0.34 1.39 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 15 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 16 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.16 -2.43 10.93 -37.45 -0.41 -2.84 16 21 C -0.24 -3.49 6.32 -103.30 -0.65 -4.14 16 22 C 0.56 7.56 8.33 34.38 0.29 7.85 16 23 O -0.53 -7.52 15.63 -19.29 -0.30 -7.82 16 24 O -0.51 -5.50 13.34 -40.68 -0.54 -6.04 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.11 1.24 6.49 -51.93 -0.34 0.90 16 30 H 0.11 1.85 5.83 -51.93 -0.30 1.54 16 31 H 0.04 0.73 8.12 -51.92 -0.42 0.31 16 32 H 0.08 1.66 6.23 -51.93 -0.32 1.33 16 33 H 0.04 0.78 6.61 -51.93 -0.34 0.43 16 34 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 37 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.41 2.30 9.11 45.56 0.42 2.72 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -30.25 332.30 -6.73 -36.98 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.80 Total: 1.38 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.68 Total: -6.40 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.47 Total: -36.52 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.77 Total: -16.39 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.25 -6.73 -36.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605889554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.229 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds