Wall clock time and date at job start Tue Mar 31 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47179 * 2 1 4 4 O 1.33629 * 125.80856 * 270.24041 * 3 2 1 5 5 C 1.34223 * 110.92232 * 180.20374 * 4 3 2 6 6 C 1.50698 * 125.42911 * 179.85404 * 5 4 3 7 7 N 1.46900 * 109.47227 * 269.69358 * 6 5 4 8 8 C 1.46893 * 111.00285 * 174.85957 * 7 6 5 9 9 H 1.09006 * 109.46828 * 325.80019 * 8 7 6 10 10 C 1.50701 * 109.47057 * 85.80099 * 8 7 6 11 11 H 1.07994 * 120.00181 * 0.02562 * 10 8 7 12 12 C 1.37875 * 119.99659 * 179.97438 * 10 8 7 13 13 N 1.31516 * 120.00317 * 0.02562 * 12 10 8 14 14 Si 1.86809 * 119.99780 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46879 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47036 * 120.00230 * 14 12 10 17 17 H 1.48502 * 109.47030 * 240.00273 * 14 12 10 18 18 C 1.53004 * 109.47419 * 205.80377 * 8 7 6 19 19 C 1.53002 * 109.46820 * 64.33292 * 18 8 7 20 20 C 1.34160 * 109.14167 * 359.58810 * 5 4 3 21 21 C 1.36498 * 125.80625 * 90.00104 * 3 2 1 22 22 C 1.47232 * 127.20151 * 359.97438 * 21 3 2 23 23 O 1.21533 * 120.00186 * 359.97438 * 22 21 3 24 24 O 1.34776 * 119.99920 * 179.97438 * 22 21 3 25 25 H 1.08993 * 109.46908 * 300.00262 * 1 2 3 26 26 H 1.09002 * 109.46808 * 59.99769 * 1 2 3 27 27 H 1.08994 * 109.46895 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47239 * 240.00112 * 2 1 3 29 29 H 1.09002 * 109.46808 * 120.00231 * 2 1 3 30 30 H 1.08992 * 109.47346 * 149.68804 * 6 5 4 31 31 H 1.09002 * 109.46671 * 29.69020 * 6 5 4 32 32 H 1.00903 * 110.99753 * 298.81899 * 7 6 5 33 33 H 0.96998 * 119.99794 * 179.97438 * 13 12 10 34 34 H 1.09001 * 109.47049 * 184.33268 * 18 8 7 35 35 H 1.08997 * 109.46908 * 304.33307 * 18 8 7 36 36 H 1.08994 * 109.47247 * 54.13455 * 19 18 8 37 37 H 1.09004 * 109.46486 * 174.13422 * 19 18 8 38 38 H 1.08998 * 109.46885 * 294.13183 * 19 18 8 39 39 H 1.08008 * 127.02130 * 180.21164 * 20 5 4 40 40 H 0.96696 * 116.99876 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2887 2.1594 -1.0837 5 6 2.7267 3.3804 -0.7389 6 6 3.1137 4.4737 -1.7012 7 7 4.5451 4.3671 -2.0135 8 6 4.9335 5.3409 -3.0424 9 1 4.1099 5.4766 -3.7435 10 6 5.2593 6.6592 -2.3889 11 1 5.1857 6.7630 -1.3165 12 6 5.6524 7.7323 -3.1601 13 7 5.7425 7.6057 -4.4660 14 14 6.0570 9.3663 -2.3500 15 1 5.8789 9.2476 -0.8805 16 1 7.4646 9.7322 -2.6496 17 1 5.1495 10.4176 -2.8758 18 6 6.1631 4.8263 -3.7936 19 6 5.8015 3.5438 -4.5456 20 6 2.7595 3.4745 0.5990 21 6 2.2986 2.1737 1.1070 22 6 2.1547 1.7682 2.5150 23 8 1.7591 0.6521 2.7886 24 8 2.4617 2.6347 3.5006 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.9118 5.4444 -1.2486 31 1 2.5332 4.3726 -2.6183 32 1 5.1058 4.4767 -1.1818 33 1 6.0187 8.3609 -5.0086 34 1 6.4974 5.5822 -4.5042 35 1 6.9622 4.6175 -3.0824 36 1 4.9347 3.7270 -5.1804 37 1 6.6451 3.2345 -5.1627 38 1 5.5674 2.7564 -3.8292 39 1 3.0629 4.3305 1.1835 40 1 2.3508 2.3233 4.4093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605891482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:23 Heat of formation + Delta-G solvation = -96.104868 kcal Electronic energy + Delta-G solvation = -21911.465410 eV Core-core repulsion = 18499.223597 eV Total energy + Delta-G solvation = -3412.241813 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.55410 -39.89164 -36.44426 -36.16164 -34.20796 -33.24029 -32.28551 -31.26806 -29.05973 -26.57985 -25.07129 -24.51437 -22.75732 -22.13816 -21.45734 -19.65433 -19.31724 -18.10519 -17.03847 -16.52402 -16.31777 -15.67011 -15.38232 -14.85162 -14.56451 -14.46035 -13.85958 -13.54633 -13.40664 -13.02475 -12.85312 -12.70708 -12.53245 -12.07975 -11.73205 -11.71138 -11.62783 -11.29304 -11.22852 -11.07681 -10.88583 -10.70879 -10.60610 -10.21882 -9.79150 -9.67752 -9.60657 -9.15744 -8.45689 -8.39521 -7.42448 -6.07236 -4.20738 1.14498 2.11592 2.70324 3.05829 3.12607 3.22224 3.31341 3.33960 4.33674 4.42909 4.72976 4.97747 5.06704 5.16862 5.18344 5.31117 5.38629 5.59819 5.68684 5.73157 5.80546 5.92409 6.05159 6.09571 6.19721 6.36759 6.39578 6.47389 6.48307 6.67606 7.03564 7.13870 7.21643 7.34235 7.50446 7.70551 7.85571 7.97430 8.02249 8.20318 8.51418 8.90372 9.47701 10.93308 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020908 B = 0.003965 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.867430 B = 7060.647854 C = 7973.054150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C 0.089 3.911 4 O -0.158 6.158 5 C 0.022 3.978 6 C 0.138 3.862 7 N -0.685 5.685 8 C 0.215 3.785 9 H 0.035 0.965 10 C -0.550 4.550 11 H 0.056 0.944 12 C 0.069 3.931 13 N -0.883 5.883 14 Si 0.890 3.110 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.106 4.106 19 C -0.137 4.137 20 C -0.176 4.176 21 C -0.238 4.238 22 C 0.562 3.438 23 O -0.525 6.525 24 O -0.508 6.508 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.333 0.667 33 H 0.262 0.738 34 H 0.092 0.908 35 H 0.031 0.969 36 H 0.037 0.963 37 H 0.025 0.975 38 H 0.046 0.954 39 H 0.160 0.840 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.975 -11.248 9.534 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C 0.035 3.965 4 O -0.053 6.053 5 C -0.027 4.027 6 C 0.008 3.992 7 N -0.315 5.315 8 C 0.108 3.892 9 H 0.053 0.947 10 C -0.589 4.589 11 H 0.074 0.926 12 C -0.134 4.134 13 N -0.521 5.521 14 Si 0.717 3.283 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.144 4.144 19 C -0.194 4.194 20 C -0.196 4.196 21 C -0.241 4.241 22 C 0.409 3.591 23 O -0.416 6.416 24 O -0.319 6.319 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.150 0.850 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.177 0.823 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -8.101 -11.877 8.249 16.575 hybrid contribution 0.304 1.803 1.730 2.518 sum -7.797 -10.074 9.979 16.182 Atomic orbital electron populations 1.21697 0.93320 1.02590 1.02501 1.20412 0.96973 0.86577 1.05182 1.22764 0.96357 0.94061 0.83284 1.83802 1.64191 1.23164 1.34121 1.22801 1.00508 0.84514 0.94869 1.20357 0.92992 0.90012 0.95815 1.60913 1.00438 1.55579 1.14580 1.19215 0.94216 0.86683 0.89054 0.94684 1.21880 1.47017 0.96448 0.93570 0.92621 1.24925 0.94922 0.98754 0.94788 1.69884 1.47053 1.31063 1.04082 0.86583 0.78113 0.83931 0.79629 1.19866 1.20917 1.20993 1.21500 0.98163 0.95693 0.99072 1.21695 0.98968 0.99566 0.99182 1.22584 1.06019 0.97576 0.93398 1.19999 1.16870 0.97201 0.90007 1.19700 0.72637 0.81539 0.85267 1.90849 1.44728 1.21551 1.84519 1.84623 1.80980 1.46874 1.19436 0.92154 0.92254 0.91323 0.89506 0.87218 0.91418 0.89947 0.85041 0.92817 0.88989 0.94967 0.94377 0.95582 0.93519 0.82278 0.73148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.90 37.16 0.37 -1.02 16 2 C -0.05 -0.60 5.94 -27.88 -0.17 -0.77 16 3 C 0.09 1.26 6.63 -34.94 -0.23 1.03 16 4 O -0.16 -2.51 10.52 7.69 0.08 -2.43 16 5 C 0.02 0.36 6.84 -35.75 -0.24 0.11 16 6 C 0.14 2.44 6.03 -4.98 -0.03 2.41 16 7 N -0.68 -13.73 5.74 -109.22 -0.63 -14.36 16 8 C 0.22 5.08 1.98 -68.87 -0.14 4.94 16 9 H 0.04 0.91 7.70 -51.93 -0.40 0.51 16 10 C -0.55 -14.11 8.47 -34.44 -0.29 -14.40 16 11 H 0.06 1.41 7.73 -52.49 -0.41 1.01 16 12 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 13 N -0.88 -24.11 11.29 55.43 0.63 -23.49 16 14 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 C -0.11 -2.46 5.45 -26.73 -0.15 -2.61 16 19 C -0.14 -2.77 9.72 37.16 0.36 -2.41 16 20 C -0.18 -2.67 10.93 -37.44 -0.41 -3.08 16 21 C -0.24 -3.48 6.32 -103.30 -0.65 -4.13 16 22 C 0.56 7.52 8.33 34.38 0.29 7.81 16 23 O -0.52 -7.50 15.64 -19.29 -0.30 -7.80 16 24 O -0.51 -5.47 13.34 -40.70 -0.54 -6.01 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.11 1.24 6.49 -51.93 -0.34 0.90 16 30 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 31 H 0.08 1.46 7.93 -51.93 -0.41 1.05 16 32 H 0.33 6.64 8.45 -39.29 -0.33 6.31 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.92 7.90 -51.93 -0.41 0.51 16 39 H 0.16 2.24 8.06 -52.48 -0.42 1.81 16 40 H 0.41 2.29 9.11 45.56 0.42 2.70 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -29.11 341.95 -7.15 -36.26 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.13 Total: 7.64 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -1.39 Total: -10.39 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.00 Total: -37.85 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.76 Total: -16.24 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.11 -7.15 -36.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605891482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.848 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds