Wall clock time and date at job start Tue Mar 31 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50709 * 109.47065 * 2 1 4 4 O 1.33629 * 125.80226 * 270.24303 * 3 2 1 5 5 C 1.34226 * 110.91783 * 180.20094 * 4 3 2 6 6 C 1.50704 * 125.42284 * 179.85224 * 5 4 3 7 7 N 1.46903 * 109.46626 * 269.69038 * 6 5 4 8 8 C 1.46907 * 110.99485 * 175.54348 * 7 6 5 9 9 H 1.09003 * 109.46943 * 325.93442 * 8 7 6 10 10 C 1.50702 * 109.47010 * 205.93350 * 8 7 6 11 11 H 1.08000 * 120.00096 * 0.02562 * 10 8 7 12 12 C 1.37875 * 119.99875 * 180.02562 * 10 8 7 13 13 N 1.31519 * 120.00056 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00024 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47186 * 59.99424 * 14 12 10 16 16 H 1.48494 * 109.47133 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46661 * 299.99887 * 14 12 10 18 18 C 1.53000 * 109.47043 * 85.93234 * 8 7 6 19 19 C 1.53001 * 109.46740 * 59.82594 * 18 8 7 20 20 C 1.34154 * 109.14404 * 359.58538 * 5 4 3 21 21 C 1.36492 * 125.81166 * 90.00053 * 3 2 1 22 22 C 1.47231 * 127.19673 * 359.97438 * 21 3 2 23 23 O 1.21532 * 120.00436 * 359.97438 * 22 21 3 24 24 O 1.34771 * 119.99753 * 179.97438 * 22 21 3 25 25 H 1.08997 * 109.46862 * 300.00446 * 1 2 3 26 26 H 1.09002 * 109.47055 * 60.00277 * 1 2 3 27 27 H 1.08996 * 109.46680 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46933 * 240.00054 * 2 1 3 29 29 H 1.08994 * 109.47354 * 119.99642 * 2 1 3 30 30 H 1.08994 * 109.46817 * 149.69844 * 6 5 4 31 31 H 1.08994 * 109.47309 * 29.69295 * 6 5 4 32 32 H 1.00894 * 110.99938 * 51.59976 * 7 6 5 33 33 H 0.96996 * 119.99691 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.47209 * 299.82688 * 18 8 7 35 35 H 1.08996 * 109.47090 * 179.82291 * 18 8 7 36 36 H 1.09005 * 109.47498 * 55.59119 * 19 18 8 37 37 H 1.08996 * 109.47200 * 295.58846 * 19 18 8 38 38 H 1.09008 * 109.47001 * 175.58809 * 19 18 8 39 39 H 1.08004 * 127.02263 * 180.27155 * 20 5 4 40 40 H 0.96703 * 117.00190 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 2.2886 2.1594 -1.0838 5 6 2.7265 3.3805 -0.7390 6 6 3.1135 4.4737 -1.7015 7 7 4.5450 4.3671 -2.0137 8 6 4.9366 5.3518 -3.0311 9 1 4.1131 5.4993 -3.7299 10 6 6.1452 4.8490 -3.7779 11 1 6.5787 3.8934 -3.5225 12 6 6.6974 5.6090 -4.7870 13 7 6.1691 6.7725 -5.0983 14 14 8.1951 4.9854 -5.7131 15 1 7.8676 3.6961 -6.3731 16 1 8.5910 5.9809 -6.7414 17 1 9.3169 4.7834 -4.7612 18 6 5.2732 6.6807 -2.3517 19 6 6.4261 6.4726 -1.3677 20 6 2.7593 3.4747 0.5988 21 6 2.2986 2.1739 1.1069 22 6 2.1547 1.7684 2.5149 23 8 1.7591 0.6523 2.7886 24 8 2.4617 2.6349 3.5004 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 2.9117 5.4445 -1.2489 31 1 2.5331 4.3726 -2.6185 32 1 4.7825 3.4311 -2.3062 33 1 6.5574 7.3069 -5.8085 34 1 4.3981 7.0459 -1.8142 35 1 5.5668 7.4104 -3.1063 36 1 7.2758 6.0340 -1.8909 37 1 6.1061 5.8032 -0.5693 38 1 6.7180 7.4327 -0.9418 39 1 3.0618 4.3310 1.1833 40 1 2.3515 2.3233 4.4092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605891484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:27 Heat of formation + Delta-G solvation = -92.458224 kcal Electronic energy + Delta-G solvation = -21938.465371 eV Core-core repulsion = 18526.381689 eV Total energy + Delta-G solvation = -3412.083683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.62159 -39.91548 -36.52026 -36.18624 -34.25264 -33.28512 -32.37512 -30.92848 -29.03967 -26.51371 -25.10292 -24.40228 -23.15427 -22.37445 -21.60628 -19.43464 -19.10171 -18.11760 -17.08824 -16.44323 -16.17655 -15.71621 -15.39607 -14.99674 -14.58415 -14.25774 -14.15849 -13.57510 -13.37616 -13.13004 -12.85716 -12.62248 -12.46860 -12.16732 -11.80228 -11.73534 -11.64903 -11.51200 -11.16399 -10.94453 -10.84008 -10.65546 -10.44347 -10.17386 -9.82297 -9.76152 -9.43742 -8.87235 -8.53247 -8.41160 -7.39520 -6.06531 -4.12462 1.10357 2.07318 2.63876 3.03139 3.09196 3.28850 3.33722 3.36537 4.34905 4.40061 4.69150 4.93984 5.03397 5.14763 5.23890 5.28073 5.35979 5.48162 5.64756 5.70724 5.74544 5.85391 5.98930 6.06568 6.09125 6.37638 6.43217 6.49638 6.63951 6.81138 7.13072 7.18636 7.21493 7.42053 7.69493 7.71981 7.77890 7.83599 8.17090 8.27867 8.53825 8.94455 9.52475 10.99291 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024045 B = 0.003704 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.189904 B = 7557.672712 C = 8085.614456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C 0.091 3.909 4 O -0.166 6.166 5 C 0.007 3.993 6 C 0.137 3.863 7 N -0.679 5.679 8 C 0.215 3.785 9 H 0.004 0.996 10 C -0.515 4.515 11 H 0.059 0.941 12 C 0.065 3.935 13 N -0.888 5.888 14 Si 0.895 3.105 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.104 4.104 19 C -0.121 4.121 20 C -0.155 4.155 21 C -0.239 4.239 22 C 0.562 3.438 23 O -0.524 6.524 24 O -0.508 6.508 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.335 0.665 33 H 0.262 0.738 34 H 0.010 0.990 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.014 0.986 39 H 0.162 0.838 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 -8.534 11.777 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C 0.037 3.963 4 O -0.061 6.061 5 C -0.041 4.041 6 C 0.007 3.993 7 N -0.311 5.311 8 C 0.109 3.891 9 H 0.022 0.978 10 C -0.553 4.553 11 H 0.077 0.923 12 C -0.137 4.137 13 N -0.527 5.527 14 Si 0.723 3.277 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.142 4.142 19 C -0.178 4.178 20 C -0.175 4.175 21 C -0.241 4.241 22 C 0.409 3.591 23 O -0.416 6.416 24 O -0.319 6.319 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.059 0.941 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.029 0.971 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.179 0.821 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -9.591 -8.183 11.517 17.077 hybrid contribution 0.472 -0.669 -0.516 0.968 sum -9.119 -8.852 11.002 16.809 Atomic orbital electron populations 1.21698 0.93274 1.02640 1.02492 1.20426 0.97007 0.86513 1.05242 1.22757 0.96316 0.94031 0.83182 1.83775 1.64599 1.23337 1.34429 1.22666 1.01592 0.84512 0.95357 1.20537 0.92128 0.92074 0.94524 1.60893 1.11077 1.09998 1.49159 1.19214 0.95075 0.88497 0.86356 0.97819 1.21111 1.12948 1.04709 1.16579 0.92278 1.24869 0.97192 0.94838 0.96810 1.69867 1.40775 1.11593 1.30436 0.86613 0.83167 0.78457 0.79505 1.20360 1.21301 1.20162 1.21455 0.95237 0.99767 0.97764 1.21458 0.99912 0.97700 0.98730 1.22543 1.04362 0.97351 0.93224 1.20040 1.16752 0.97292 0.90066 1.19674 0.72639 0.81548 0.85251 1.90852 1.44700 1.21542 1.84512 1.84621 1.80969 1.46818 1.19447 0.92123 0.92279 0.91277 0.89509 0.87132 0.88403 0.94079 0.84750 0.92813 0.97078 0.89337 0.92464 0.93925 0.96684 0.82056 0.73100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.90 37.16 0.37 -0.99 16 2 C -0.05 -0.59 5.94 -27.88 -0.17 -0.76 16 3 C 0.09 1.26 6.63 -34.93 -0.23 1.02 16 4 O -0.17 -2.56 10.52 7.68 0.08 -2.48 16 5 C 0.01 0.11 6.74 -35.75 -0.24 -0.13 16 6 C 0.14 2.33 6.05 -4.97 -0.03 2.30 16 7 N -0.68 -13.72 5.64 -109.21 -0.62 -14.33 16 8 C 0.22 5.13 2.30 -68.86 -0.16 4.97 16 9 H 0.00 0.11 7.71 -51.93 -0.40 -0.29 16 10 C -0.51 -13.43 7.26 -34.44 -0.25 -13.68 16 11 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 12 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 13 N -0.89 -24.46 11.32 55.43 0.63 -23.83 16 14 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C -0.10 -2.41 5.59 -26.73 -0.15 -2.56 16 19 C -0.12 -2.63 9.52 37.16 0.35 -2.28 16 20 C -0.15 -2.31 10.93 -37.45 -0.41 -2.72 16 21 C -0.24 -3.42 6.32 -103.30 -0.65 -4.07 16 22 C 0.56 7.38 8.33 34.38 0.29 7.66 16 23 O -0.52 -7.38 15.64 -19.29 -0.30 -7.68 16 24 O -0.51 -5.31 13.34 -40.68 -0.54 -5.85 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.11 1.23 6.49 -51.93 -0.34 0.89 16 30 H 0.10 1.59 7.61 -51.93 -0.40 1.20 16 31 H 0.04 0.71 7.94 -51.93 -0.41 0.30 16 32 H 0.34 6.85 8.13 -39.29 -0.32 6.53 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.01 0.23 7.60 -51.93 -0.39 -0.17 16 35 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 36 H 0.06 1.36 7.07 -51.93 -0.37 0.99 16 37 H 0.04 0.88 7.74 -51.93 -0.40 0.48 16 38 H 0.01 0.29 8.14 -51.92 -0.42 -0.14 16 39 H 0.16 2.23 8.06 -52.48 -0.42 1.81 16 40 H 0.41 2.17 9.11 45.56 0.42 2.58 16 LS Contribution 338.30 15.07 5.10 5.10 Total: -1.00 -29.38 338.30 -7.05 -36.43 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.00 Total: 6.48 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.38 Total: -9.58 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.01 Total: -38.17 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.76 Total: -16.01 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.38 -7.05 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605891484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.025 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds