Wall clock time and date at job start Tue Mar 31 2020 05:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40315 * 126.65242 * 2 1 4 4 C 1.35161 * 107.12939 * 179.74075 * 3 2 1 5 5 C 1.50700 * 125.61063 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47195 * 89.99840 * 5 4 3 7 7 C 1.46907 * 111.00173 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47091 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47223 * 305.00399 * 8 7 6 10 10 C 1.52997 * 109.46844 * 65.00108 * 8 7 6 11 11 C 1.52998 * 109.46870 * 184.99798 * 8 7 6 12 12 C 1.50703 * 109.47164 * 175.00122 * 11 8 7 13 13 H 1.08003 * 119.99450 * 0.02562 * 12 11 8 14 14 C 1.37868 * 120.00020 * 180.02562 * 12 11 8 15 15 N 1.31513 * 120.00221 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99985 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47084 * 59.99780 * 16 14 12 18 18 H 1.48501 * 109.47097 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47277 * 299.99853 * 16 14 12 20 20 O 1.33914 * 108.78323 * 359.97438 * 4 3 2 21 21 C 1.34940 * 109.38115 * 0.02562 * 20 4 3 22 22 C 1.46461 * 125.99743 * 180.02562 * 21 20 4 23 23 O 1.21624 * 120.00080 * 179.97438 * 22 21 20 24 24 O 1.34898 * 120.00308 * 359.97377 * 22 21 20 25 25 H 1.09004 * 109.47177 * 90.01787 * 1 2 3 26 26 H 1.08998 * 109.47171 * 210.02043 * 1 2 3 27 27 H 1.08999 * 109.46961 * 330.02503 * 1 2 3 28 28 H 1.08003 * 126.43203 * 359.74062 * 3 2 1 29 29 H 1.09004 * 109.47476 * 210.00018 * 5 4 3 30 30 H 1.09000 * 109.46694 * 329.99633 * 5 4 3 31 31 H 1.00901 * 110.99794 * 303.95588 * 6 5 4 32 32 H 1.08995 * 109.46935 * 300.00211 * 7 6 5 33 33 H 1.09000 * 109.46985 * 59.99725 * 7 6 5 34 34 H 1.09002 * 109.47545 * 299.99495 * 10 8 7 35 35 H 1.09003 * 109.47537 * 59.99827 * 10 8 7 36 36 H 1.09001 * 109.47187 * 179.97438 * 10 8 7 37 37 H 1.08996 * 109.47417 * 295.00678 * 11 8 7 38 38 H 1.09004 * 109.46808 * 55.00290 * 11 8 7 39 39 H 0.97005 * 119.99940 * 180.02562 * 15 14 12 40 40 H 0.96695 * 117.00568 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3446 1.1257 0.0000 4 6 3.6185 0.6740 0.0058 5 6 4.8549 1.5355 0.0086 6 7 5.2515 1.8186 1.3944 7 6 6.4559 2.6588 1.4362 8 6 6.8367 2.9321 2.8927 9 1 5.9849 3.3671 3.4154 10 6 7.2349 1.6195 3.5705 11 6 8.0149 3.9071 2.9373 12 6 8.3111 4.2718 4.3692 13 1 7.7185 3.8500 5.1675 14 6 9.3385 5.1440 4.6601 15 7 10.0604 5.6573 3.6880 16 14 9.7061 5.5955 6.4350 17 1 10.0508 4.3682 7.1968 18 1 10.8496 6.5420 6.4784 19 1 8.5106 6.2348 7.0410 20 8 3.6012 -0.6650 0.0100 21 6 2.3226 -1.0963 0.0063 22 6 1.8857 -2.4942 0.0095 23 8 0.6989 -2.7605 0.0061 24 8 2.7994 -3.4866 0.0162 25 1 -0.3634 -0.0003 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3633 0.8902 0.5134 28 1 2.0303 2.1590 -0.0039 29 1 5.6638 1.0119 -0.5010 30 1 4.6462 2.4722 -0.5083 31 1 4.4947 2.2462 1.9068 32 1 7.2759 2.1433 0.9364 33 1 6.2578 3.6032 0.9294 34 1 6.3956 0.9248 3.5387 35 1 8.0867 1.1844 3.0477 36 1 7.5067 1.8142 4.6080 37 1 8.8923 3.4374 2.4930 38 1 7.7624 4.8078 2.3777 39 1 10.7835 6.2706 3.8927 40 1 2.4631 -4.3931 0.0184 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607648890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:42 Heat of formation + Delta-G solvation = -95.870715 kcal Electronic energy + Delta-G solvation = -21133.690932 eV Core-core repulsion = 17721.459273 eV Total energy + Delta-G solvation = -3412.231659 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.02749 -40.20364 -37.12086 -36.57339 -34.47077 -34.28591 -32.25416 -30.71684 -28.19924 -27.32488 -26.49294 -24.60635 -23.00041 -22.28404 -21.61754 -20.11069 -19.10754 -18.66583 -17.71424 -16.90591 -16.40195 -15.92378 -15.52944 -15.00136 -14.67394 -14.25931 -14.13380 -13.93742 -13.63984 -13.44164 -13.39006 -12.97777 -12.66099 -12.47552 -12.23540 -11.95620 -11.72843 -11.59908 -11.38790 -11.02137 -10.85903 -10.79344 -10.33012 -10.30885 -9.96708 -9.74440 -9.23759 -9.02751 -8.86043 -8.34552 -8.33028 -5.99333 -4.00625 0.53493 1.93014 2.15540 2.56734 2.94105 3.33678 3.38136 3.40691 4.16255 4.41053 4.44672 4.52485 4.79049 5.04085 5.08332 5.17011 5.34286 5.36651 5.37278 5.46754 5.61879 5.72876 5.76139 5.79581 5.98315 6.08581 6.15725 6.33838 6.46990 6.63210 6.66758 6.91294 7.09502 7.14962 7.22404 7.44289 7.49812 7.66166 7.81694 8.00401 8.44143 9.05425 9.62963 11.12154 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033095 B = 0.002609 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.849540 B =10728.803719 C =10898.359404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.063 4.063 3 C -0.226 4.226 4 C 0.062 3.938 5 C 0.126 3.874 6 N -0.683 5.683 7 C 0.064 3.936 8 C -0.082 4.082 9 H 0.055 0.945 10 C -0.124 4.124 11 C 0.028 3.972 12 C -0.514 4.514 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 O -0.139 6.139 21 C -0.085 4.085 22 C 0.574 3.426 23 O -0.499 6.499 24 O -0.504 6.504 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.160 0.840 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.343 0.657 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.017 0.983 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.002 -12.696 -10.368 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.065 4.065 3 C -0.246 4.246 4 C 0.008 3.992 5 C -0.003 4.003 6 N -0.315 5.315 7 C -0.064 4.064 8 C -0.101 4.101 9 H 0.073 0.927 10 C -0.182 4.182 11 C -0.010 4.010 12 C -0.552 4.552 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 O -0.034 6.034 21 C -0.135 4.135 22 C 0.419 3.581 23 O -0.389 6.389 24 O -0.315 6.315 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.178 0.822 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.161 0.839 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -16.399 -13.051 -10.336 23.368 hybrid contribution -0.302 0.704 0.683 1.027 sum -16.701 -12.347 -9.653 22.903 Atomic orbital electron populations 1.20497 0.87939 1.03960 1.03118 1.20627 0.97543 0.90641 0.97729 1.21533 0.91326 1.00279 1.11435 1.22946 0.97216 0.80461 0.98555 1.20533 0.91537 0.95346 0.92867 1.60561 1.08584 1.52089 1.10296 1.22229 0.90786 0.93672 0.99720 1.21214 1.00037 0.97268 0.91613 0.92686 1.21604 0.99542 0.96249 1.00767 1.19118 0.91777 0.92987 0.97085 1.21193 1.15324 1.26093 0.92637 0.92596 1.25012 0.96255 0.96236 0.96999 1.69952 1.20657 1.31641 1.31445 0.86687 0.77767 0.78308 0.85409 1.20247 1.21364 1.20306 1.84140 1.27378 1.22007 1.69844 1.20308 0.82367 0.91386 1.19480 1.18826 0.83171 0.83595 0.72462 1.90962 1.17224 1.83270 1.47466 1.84698 1.41659 1.19655 1.85506 0.90433 0.89616 0.90804 0.82218 0.88660 0.91298 0.83875 0.91045 0.95166 0.93943 0.94053 0.92675 0.96471 0.96867 0.93015 0.72357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 9.82 36.00 0.35 -0.50 16 2 C -0.06 -0.69 6.20 -104.42 -0.65 -1.34 16 3 C -0.23 -2.31 10.72 -39.90 -0.43 -2.74 16 4 C 0.06 0.72 6.82 -35.40 -0.24 0.48 16 5 C 0.13 1.38 6.21 -4.98 -0.03 1.35 16 6 N -0.68 -9.17 5.95 -115.05 -0.68 -9.86 16 7 C 0.06 1.01 5.07 -3.82 -0.02 0.99 16 8 C -0.08 -1.62 2.48 -90.62 -0.22 -1.84 16 9 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 10 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 11 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 12 C -0.51 -14.21 8.41 -34.44 -0.29 -14.50 16 13 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 16 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 O -0.14 -1.84 10.67 4.73 0.05 -1.79 16 21 C -0.09 -1.05 7.18 -36.85 -0.26 -1.31 16 22 C 0.57 6.44 8.30 34.04 0.28 6.72 16 23 O -0.50 -6.09 15.52 -19.36 -0.30 -6.39 16 24 O -0.50 -4.49 13.44 -42.48 -0.57 -5.06 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.82 6.44 -51.93 -0.33 0.49 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.34 4.36 8.72 -39.29 -0.34 4.01 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.74 7.75 -51.93 -0.40 0.33 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.42 1.43 9.11 45.56 0.42 1.84 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -32.48 343.57 -7.19 -39.67 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.18 Total: 0.37 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -1.40 Total: -12.68 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.05 Total: -35.83 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.82 Total: -13.23 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.48 -7.19 -39.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607648890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.196 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds