Wall clock time and date at job start Tue Mar 31 2020 05:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33627 * 125.80568 * 2 1 4 4 C 1.34220 * 110.92078 * 180.16058 * 3 2 1 5 5 C 1.50699 * 125.42632 * 179.87756 * 4 3 2 6 6 N 1.46905 * 109.47293 * 269.68849 * 5 4 3 7 7 C 1.46900 * 110.99925 * 293.95940 * 6 5 4 8 8 C 1.46895 * 111.00336 * 169.99939 * 6 5 4 9 9 H 1.09002 * 109.47102 * 173.58868 * 8 6 5 10 10 C 1.52995 * 109.46943 * 53.58525 * 8 6 5 11 11 C 1.53004 * 109.47294 * 293.58691 * 8 6 5 12 12 C 1.50700 * 109.46761 * 296.23645 * 11 8 6 13 13 H 1.08005 * 120.00258 * 354.99200 * 12 11 8 14 14 C 1.37874 * 119.99890 * 174.99013 * 12 11 8 15 15 N 1.31516 * 120.00358 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00340 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47312 * 89.99696 * 16 14 12 18 18 H 1.48499 * 109.47554 * 210.00114 * 16 14 12 19 19 H 1.48502 * 109.46792 * 330.00140 * 16 14 12 20 20 C 1.34157 * 109.14720 * 359.60550 * 4 3 2 21 21 C 1.36501 * 125.80872 * 179.73578 * 2 1 3 22 22 C 1.47226 * 127.19921 * 359.97161 * 21 2 1 23 23 O 1.21535 * 120.00583 * 0.02562 * 22 21 2 24 24 O 1.34774 * 119.99869 * 179.97438 * 22 21 2 25 25 H 1.08998 * 109.46589 * 270.26538 * 1 2 3 26 26 H 1.08999 * 109.47003 * 30.26912 * 1 2 3 27 27 H 1.09000 * 109.46900 * 150.27005 * 1 2 3 28 28 H 1.09004 * 109.47618 * 149.68914 * 5 4 3 29 29 H 1.08999 * 109.47233 * 29.68616 * 5 4 3 30 30 H 1.09003 * 109.47068 * 302.27300 * 7 6 5 31 31 H 1.09001 * 109.47463 * 62.27229 * 7 6 5 32 32 H 1.08996 * 109.47433 * 182.27862 * 7 6 5 33 33 H 1.08995 * 109.47688 * 299.99800 * 10 8 6 34 34 H 1.09005 * 109.47401 * 60.00130 * 10 8 6 35 35 H 1.09006 * 109.47042 * 179.97438 * 10 8 6 36 36 H 1.08996 * 109.46867 * 56.22895 * 11 8 6 37 37 H 1.08993 * 109.47062 * 176.23843 * 11 8 6 38 38 H 0.96996 * 120.00429 * 179.97438 * 15 14 12 39 39 H 1.07998 * 127.02657 * 180.20355 * 20 4 3 40 40 H 0.96700 * 116.99976 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5860 0.7389 -0.0035 5 6 4.7456 1.7013 -0.0072 6 7 5.1234 2.0077 -1.3934 7 6 5.6552 0.8169 -2.0695 8 6 6.0862 3.1160 -1.4441 9 1 6.4353 3.2475 -2.4683 10 6 7.2763 2.7994 -0.5362 11 6 5.4088 4.4023 -0.9670 12 6 4.2943 4.7642 -1.9146 13 1 4.1411 4.1862 -2.8141 14 6 3.4702 5.8331 -1.6334 15 7 3.6563 6.5367 -0.5379 16 14 2.0882 6.2814 -2.8075 17 1 0.8549 5.5487 -2.4233 18 1 1.8365 7.7434 -2.7407 19 1 2.4745 5.9084 -4.1920 20 6 3.6857 -0.5989 0.0028 21 6 2.3057 -1.1070 0.0051 22 6 1.8754 -2.5150 0.0122 23 8 0.6913 -2.7886 0.0135 24 8 2.7947 -3.5005 0.0161 25 1 -0.3632 0.0048 1.0277 26 1 -0.3633 0.8876 -0.5180 27 1 -0.3633 -0.8924 -0.5096 28 1 5.5933 1.2509 0.5093 29 1 4.4565 2.6206 0.5022 30 1 6.5131 0.4369 -1.5148 31 1 4.8827 0.0492 -2.1147 32 1 5.9645 1.0810 -3.0808 33 1 6.9273 2.6680 0.4879 34 1 7.7590 1.8830 -0.8760 35 1 7.9910 3.6216 -0.5742 36 1 5.0008 4.2491 0.0320 37 1 6.1402 5.2099 -0.9410 38 1 3.0768 7.2889 -0.3402 39 1 4.5939 -1.1833 0.0051 40 1 2.4641 -4.4092 0.0211 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608045774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:24 Heat of formation + Delta-G solvation = -77.067335 kcal Electronic energy + Delta-G solvation = -22477.223816 eV Core-core repulsion = 19065.807533 eV Total energy + Delta-G solvation = -3411.416284 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.52165 -39.89082 -38.00226 -36.15586 -33.25847 -32.96210 -32.18139 -30.54186 -28.57441 -27.30695 -26.05918 -24.28185 -23.54231 -22.36980 -21.55284 -19.55135 -18.88999 -18.07194 -16.90484 -16.40488 -16.12402 -15.55379 -15.38299 -15.09140 -14.65154 -14.33294 -14.09421 -13.56120 -13.25464 -13.04584 -12.92905 -12.82167 -12.38547 -12.31531 -11.95467 -11.69642 -11.67041 -11.62637 -11.47479 -10.99131 -10.80457 -10.65518 -10.59042 -10.41209 -10.09640 -9.74078 -9.24794 -9.01448 -8.38666 -8.24675 -7.61756 -5.89639 -3.87202 1.18790 2.07983 2.75154 3.06099 3.14119 3.39922 3.45694 3.49740 4.45384 4.56524 4.64735 4.80854 5.15218 5.28354 5.46014 5.47007 5.48909 5.55110 5.62016 5.66537 5.71232 5.76789 5.90234 5.92576 5.98756 6.05659 6.15133 6.25161 6.38955 6.41808 6.48457 6.57828 6.89313 7.24484 7.41778 7.56605 7.78971 7.85277 7.92332 8.10365 8.54917 9.17658 9.74739 11.22300 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.005250 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.885355 B = 5331.654672 C = 6551.975950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.095 3.905 3 O -0.147 6.147 4 C 0.029 3.971 5 C 0.124 3.876 6 N -0.511 5.511 7 C 0.018 3.982 8 C 0.087 3.913 9 H 0.075 0.925 10 C -0.186 4.186 11 C 0.027 3.973 12 C -0.490 4.490 13 H 0.059 0.941 14 C 0.053 3.947 15 N -0.903 5.903 16 Si 0.888 3.112 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.276 1.276 20 C -0.179 4.179 21 C -0.247 4.247 22 C 0.563 3.437 23 O -0.525 6.525 24 O -0.510 6.510 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.022 0.978 37 H 0.018 0.982 38 H 0.257 0.743 39 H 0.157 0.843 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.538 -16.482 2.412 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 O -0.042 6.042 4 C -0.020 4.020 5 C -0.003 4.003 6 N -0.234 5.234 7 C -0.131 4.131 8 C -0.020 4.020 9 H 0.093 0.907 10 C -0.245 4.245 11 C -0.010 4.010 12 C -0.528 4.528 13 H 0.077 0.923 14 C -0.147 4.147 15 N -0.544 5.544 16 Si 0.717 3.283 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.201 1.201 20 C -0.199 4.199 21 C -0.249 4.249 22 C 0.410 3.590 23 O -0.417 6.417 24 O -0.321 6.321 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.036 0.964 38 H 0.067 0.933 39 H 0.174 0.826 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -0.194 -15.526 2.234 15.687 hybrid contribution -0.165 -0.771 -0.188 0.811 sum -0.359 -16.298 2.045 16.429 Atomic orbital electron populations 1.20660 0.83908 1.05312 1.04455 1.22817 0.94123 0.83214 0.95743 1.83904 1.16974 1.33796 1.69499 1.22412 0.82421 0.94243 1.02957 1.20655 0.89646 0.97721 0.92272 1.62021 1.42252 1.05870 1.13258 1.22488 0.97939 0.93537 0.99088 1.21983 0.88705 0.92525 0.98831 0.90721 1.22551 1.00242 1.00864 1.00856 1.19243 0.95333 0.89339 0.97045 1.21120 1.12995 1.11785 1.06926 0.92280 1.24965 0.97677 0.96661 0.95349 1.69951 1.39322 1.20011 1.25144 0.86650 0.82927 0.77140 0.81580 1.20877 1.21612 1.20054 1.22485 0.96141 0.93138 1.08107 1.19952 0.94311 0.89948 1.20699 1.19681 0.82789 0.85197 0.71378 1.90855 1.18325 1.84499 1.48031 1.84604 1.42075 1.19436 1.86016 0.89146 0.89611 0.87699 0.91961 0.87292 0.96232 0.91939 0.91659 0.92854 0.93900 0.92200 0.95939 0.96375 0.93309 0.82573 0.73192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.89 36.01 0.36 -0.71 16 2 C 0.10 1.47 7.38 -34.93 -0.26 1.21 16 3 O -0.15 -2.66 10.52 7.70 0.08 -2.58 16 4 C 0.03 0.48 6.19 -35.75 -0.22 0.26 16 5 C 0.12 2.12 4.42 -4.97 -0.02 2.10 16 6 N -0.51 -9.41 4.38 -236.33 -1.04 -10.44 16 7 C 0.02 0.27 8.89 60.06 0.53 0.80 16 8 C 0.09 1.68 2.27 -67.72 -0.15 1.52 16 9 H 0.07 1.47 7.98 -51.93 -0.41 1.05 16 10 C -0.19 -2.93 8.45 37.16 0.31 -2.62 16 11 C 0.03 0.67 4.37 -27.88 -0.12 0.55 16 12 C -0.49 -13.51 8.80 -34.44 -0.30 -13.81 16 13 H 0.06 1.64 7.75 -52.48 -0.41 1.24 16 14 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 15 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 16 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C -0.18 -2.61 9.56 -37.44 -0.36 -2.97 16 21 C -0.25 -3.66 6.32 -103.30 -0.65 -4.31 16 22 C 0.56 7.56 8.33 34.38 0.29 7.84 16 23 O -0.53 -7.76 15.64 -19.29 -0.30 -8.06 16 24 O -0.51 -5.23 13.34 -40.69 -0.54 -5.78 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.10 1.26 6.49 -51.93 -0.34 0.92 16 28 H 0.06 0.91 6.81 -51.93 -0.35 0.55 16 29 H 0.11 2.13 6.04 -51.93 -0.31 1.82 16 30 H 0.02 0.26 6.89 -51.93 -0.36 -0.10 16 31 H 0.06 0.92 6.44 -51.93 -0.33 0.59 16 32 H 0.06 0.96 8.00 -51.93 -0.42 0.54 16 33 H 0.05 0.82 6.55 -51.93 -0.34 0.48 16 34 H 0.04 0.59 6.84 -51.93 -0.36 0.23 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.02 0.58 6.23 -51.93 -0.32 0.26 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.16 1.96 8.06 -52.49 -0.42 1.53 16 40 H 0.41 2.11 9.11 45.56 0.42 2.53 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -32.51 332.39 -6.56 -39.06 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.78 Total: 0.56 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -0.70 Total: -8.72 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.30 Total: -36.55 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.76 Total: -16.42 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.51 -6.56 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608045774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.005 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds