Wall clock time and date at job start Tue Mar 31 2020 05:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33620 * 125.80366 * 2 1 4 4 C 1.34225 * 110.92358 * 180.15895 * 3 2 1 5 5 C 1.50696 * 125.43103 * 179.87395 * 4 3 2 6 6 N 1.46900 * 109.47618 * 269.69664 * 5 4 3 7 7 C 1.46897 * 110.99672 * 293.95518 * 6 5 4 8 8 C 1.46894 * 111.00031 * 169.99733 * 6 5 4 9 9 H 1.08998 * 109.47779 * 309.99942 * 8 6 5 10 10 C 1.52998 * 109.47018 * 70.00259 * 8 6 5 11 11 C 1.53002 * 109.47229 * 189.99972 * 8 6 5 12 12 C 1.50706 * 109.47153 * 64.99752 * 11 8 6 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 8 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 C 1.34162 * 109.14280 * 359.61578 * 4 3 2 21 21 C 1.36496 * 125.80902 * 179.73832 * 2 1 3 22 22 C 1.47228 * 127.20046 * 359.97438 * 21 2 1 23 23 O 1.21533 * 120.00157 * 359.97438 * 22 21 2 24 24 O 1.34773 * 120.00171 * 180.02562 * 22 21 2 25 25 H 1.08999 * 109.47218 * 270.26066 * 1 2 3 26 26 H 1.09006 * 109.47133 * 30.26432 * 1 2 3 27 27 H 1.09000 * 109.46867 * 150.26378 * 1 2 3 28 28 H 1.09001 * 109.47275 * 149.69438 * 5 4 3 29 29 H 1.09005 * 109.46867 * 29.69784 * 5 4 3 30 30 H 1.09004 * 109.46822 * 296.04098 * 7 6 5 31 31 H 1.08997 * 109.47606 * 56.04636 * 7 6 5 32 32 H 1.09007 * 109.46996 * 176.04460 * 7 6 5 33 33 H 1.09007 * 109.46878 * 179.97438 * 10 8 6 34 34 H 1.09001 * 109.46923 * 299.99707 * 10 8 6 35 35 H 1.08995 * 109.47190 * 60.00037 * 10 8 6 36 36 H 1.09004 * 109.47178 * 305.00542 * 11 8 6 37 37 H 1.08993 * 109.47411 * 185.00225 * 11 8 6 38 38 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 39 39 H 1.07995 * 127.02399 * 180.20611 * 20 4 3 40 40 H 0.96692 * 117.00750 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2887 1.0837 0.0000 4 6 3.5860 0.7390 -0.0035 5 6 4.7456 1.7014 -0.0072 6 7 5.1233 2.0078 -1.3934 7 6 5.6551 0.8171 -2.0695 8 6 6.0861 3.1161 -1.4439 9 1 5.7143 3.9481 -0.8458 10 6 7.4318 2.6484 -0.8863 11 6 6.2651 3.5705 -2.8939 12 6 4.9685 4.1450 -3.4040 13 1 4.1036 4.1827 -2.7584 14 6 4.8866 4.6225 -4.6948 15 7 5.9414 4.5815 -5.4793 16 14 3.2798 5.3353 -5.3269 17 1 3.4551 5.7817 -6.7323 18 1 2.2197 4.2969 -5.2658 19 1 2.8870 6.4937 -4.4849 20 6 3.6857 -0.5989 0.0026 21 6 2.3057 -1.1069 0.0051 22 6 1.8754 -2.5149 0.0120 23 8 0.6913 -2.7885 0.0142 24 8 2.7947 -3.5005 0.0170 25 1 -0.3633 0.0047 1.0276 26 1 -0.3634 0.8876 -0.5180 27 1 -0.3633 -0.8923 -0.5097 28 1 5.5933 1.2510 0.5092 29 1 4.4565 2.6206 0.5023 30 1 6.5766 0.5023 -1.5796 31 1 4.9224 0.0119 -2.0173 32 1 5.8612 1.0537 -3.1135 33 1 8.1464 3.4708 -0.9242 34 1 7.3043 2.3248 0.1467 35 1 7.8037 1.8166 -1.4844 36 1 6.5514 2.7175 -3.5093 37 1 7.0438 4.3315 -2.9427 38 1 6.7759 4.2116 -5.1511 39 1 4.5939 -1.1833 0.0050 40 1 2.4643 -4.4091 0.0218 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608045776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:27 Heat of formation + Delta-G solvation = -80.020982 kcal Electronic energy + Delta-G solvation = -22274.538046 eV Core-core repulsion = 18862.993682 eV Total energy + Delta-G solvation = -3411.544363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.68417 -39.96705 -38.10019 -36.22695 -33.64481 -33.14298 -32.31844 -30.50840 -28.33283 -27.04745 -26.40922 -24.41925 -23.46057 -22.48912 -21.65289 -19.50823 -19.10170 -18.16689 -16.95404 -16.66220 -16.54383 -15.71599 -15.61859 -15.25823 -14.59071 -14.40447 -13.65145 -13.55430 -13.36035 -13.23151 -13.05910 -12.97472 -12.94360 -12.49342 -11.97875 -11.79376 -11.72529 -11.47789 -11.14957 -11.10946 -10.95614 -10.75073 -10.68505 -10.27156 -10.02404 -9.86779 -9.55738 -8.55392 -8.45610 -8.21788 -7.66923 -6.22357 -3.88060 1.06737 1.92319 2.59485 2.95565 3.03553 3.51624 3.54488 3.72426 4.31338 4.52363 4.65049 4.68475 5.03274 5.11742 5.31020 5.33117 5.39272 5.49478 5.53850 5.56125 5.61182 5.71648 5.79568 5.83776 5.89227 5.96633 5.98610 6.27076 6.30163 6.32635 6.48121 6.54655 6.76080 7.04977 7.21561 7.36709 7.64930 7.76226 7.78018 8.36609 8.65556 9.02885 9.80546 11.17945 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.004570 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.402052 B = 6125.795710 C = 6996.273931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.096 3.904 3 O -0.155 6.155 4 C 0.021 3.979 5 C 0.124 3.876 6 N -0.510 5.510 7 C 0.019 3.981 8 C 0.095 3.905 9 H 0.073 0.927 10 C -0.188 4.188 11 C 0.017 3.983 12 C -0.573 4.573 13 H 0.054 0.946 14 C 0.009 3.991 15 N -0.922 5.922 16 Si 1.066 2.934 17 H -0.285 1.285 18 H -0.289 1.289 19 H -0.290 1.290 20 C -0.171 4.171 21 C -0.243 4.243 22 C 0.563 3.437 23 O -0.524 6.524 24 O -0.509 6.509 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.022 0.978 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.011 0.989 37 H 0.010 0.990 38 H 0.265 0.735 39 H 0.158 0.842 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.900 -12.418 13.919 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 O -0.050 6.050 4 C -0.028 4.028 5 C -0.004 4.004 6 N -0.233 5.233 7 C -0.129 4.129 8 C -0.013 4.013 9 H 0.092 0.908 10 C -0.247 4.247 11 C -0.020 4.020 12 C -0.611 4.611 13 H 0.072 0.928 14 C -0.193 4.193 15 N -0.560 5.560 16 Si 0.896 3.104 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.216 1.216 20 C -0.190 4.190 21 C -0.245 4.245 22 C 0.409 3.591 23 O -0.416 6.416 24 O -0.321 6.321 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.176 0.824 40 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -6.292 -10.922 12.334 17.635 hybrid contribution 1.414 -1.831 1.740 2.894 sum -4.878 -12.752 14.074 19.608 Atomic orbital electron populations 1.20667 0.83699 1.05483 1.04401 1.22797 0.94068 0.83100 0.95856 1.83808 1.16971 1.34151 1.70098 1.22298 0.82217 0.94429 1.03889 1.20598 0.90105 0.96771 0.92877 1.62077 1.43024 1.06950 1.11264 1.22500 0.97267 0.92341 1.00767 1.21816 0.87270 0.91516 1.00660 0.90844 1.22570 1.00420 1.01992 0.99674 1.19318 0.97793 0.95514 0.89336 1.21948 0.97045 1.42080 1.00066 0.92813 1.25752 1.03577 0.96066 0.93874 1.70802 1.02121 1.44397 1.38685 0.83575 0.74709 0.76202 0.75953 1.21107 1.21610 1.21646 1.22522 0.96301 0.93160 1.07063 1.19978 0.94244 0.90126 1.20187 1.19648 0.82818 0.85194 0.71422 1.90859 1.18291 1.84495 1.47908 1.84598 1.42026 1.19505 1.85923 0.89153 0.89622 0.87547 0.91861 0.89105 0.96009 0.92169 0.90136 0.92277 0.93918 0.92536 0.97106 0.97154 0.92473 0.82406 0.73037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.89 36.01 0.36 -0.56 16 2 C 0.10 1.33 7.38 -34.93 -0.26 1.07 16 3 O -0.16 -2.43 10.52 7.71 0.08 -2.35 16 4 C 0.02 0.31 6.20 -35.75 -0.22 0.09 16 5 C 0.12 1.85 5.05 -4.98 -0.03 1.82 16 6 N -0.51 -9.46 4.42 -236.33 -1.04 -10.50 16 7 C 0.02 0.33 8.54 60.06 0.51 0.85 16 8 C 0.09 1.85 2.26 -67.72 -0.15 1.70 16 9 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 10 C -0.19 -2.98 8.44 37.16 0.31 -2.67 16 11 C 0.02 0.43 3.68 -27.88 -0.10 0.33 16 12 C -0.57 -16.13 8.84 -34.44 -0.30 -16.43 16 13 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.01 0.27 5.46 -17.82 -0.10 0.18 16 15 N -0.92 -28.41 13.65 55.43 0.76 -27.65 16 16 Si 1.07 26.04 29.90 -169.99 -5.08 20.95 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 C -0.17 -2.35 9.40 -37.44 -0.35 -2.71 16 21 C -0.24 -3.39 6.32 -103.30 -0.65 -4.04 16 22 C 0.56 7.24 8.33 34.38 0.29 7.52 16 23 O -0.52 -7.41 15.64 -19.29 -0.30 -7.71 16 24 O -0.51 -5.08 13.34 -40.69 -0.54 -5.62 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.11 1.16 6.49 -51.93 -0.34 0.83 16 28 H 0.06 0.81 7.06 -51.93 -0.37 0.44 16 29 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 30 H 0.02 0.33 6.21 -51.93 -0.32 0.01 16 31 H 0.06 0.98 6.08 -51.93 -0.32 0.67 16 32 H 0.08 1.61 6.37 -51.93 -0.33 1.28 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.58 6.91 -51.93 -0.36 0.22 16 35 H 0.06 0.89 6.33 -51.93 -0.33 0.56 16 36 H 0.01 0.28 6.21 -51.93 -0.32 -0.04 16 37 H 0.01 0.27 8.00 -51.93 -0.42 -0.15 16 38 H 0.27 8.09 7.22 -40.82 -0.29 7.80 16 39 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.41 2.02 9.11 45.56 0.42 2.43 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -33.74 330.65 -6.54 -40.29 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.69 Total: 0.46 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -0.70 Total: -12.85 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.29 Total: -38.16 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.76 Total: -15.68 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.95 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.74 -6.54 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608045776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.736 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds