Wall clock time and date at job start Tue Mar 31 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47310 * 2 1 4 4 C 1.50701 * 109.46686 * 240.00317 * 2 1 3 5 5 H 1.08007 * 119.99430 * 237.00871 * 4 2 1 6 6 C 1.37873 * 120.00384 * 57.00583 * 4 2 1 7 7 N 1.31510 * 119.99737 * 5.54501 * 6 4 2 8 8 Si 1.86798 * 120.00086 * 185.54008 * 6 4 2 9 9 H 1.48499 * 109.47092 * 85.00016 * 8 6 4 10 10 H 1.48502 * 109.47395 * 205.00037 * 8 6 4 11 11 H 1.48504 * 109.47256 * 325.00299 * 8 6 4 12 12 C 1.53000 * 109.47162 * 120.00284 * 2 1 3 13 13 N 1.46504 * 109.46861 * 299.99598 * 12 2 1 14 14 C 1.34771 * 119.99806 * 179.97438 * 13 12 2 15 15 O 1.21284 * 120.00286 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99822 * 180.02562 * 14 13 12 17 17 C 1.54884 * 129.08939 * 299.93678 * 16 14 13 18 18 C 1.57167 * 77.91811 * 180.16793 * 17 16 14 19 19 C 1.50699 * 129.25281 * 179.19838 * 18 17 16 20 20 O 1.20831 * 119.99753 * 241.28350 * 19 18 17 21 21 O 1.34227 * 120.00295 * 61.28270 * 19 18 17 22 22 C 1.54414 * 129.00943 * 180.02562 * 16 14 13 23 23 C 1.54889 * 129.09086 * 60.06496 * 16 14 13 24 24 H 1.08996 * 109.46650 * 293.93311 * 1 2 3 25 25 H 1.08997 * 109.46858 * 53.92823 * 1 2 3 26 26 H 1.08993 * 109.47178 * 173.93558 * 1 2 3 27 27 H 1.08994 * 109.47049 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47336 * 300.00223 * 3 2 1 29 29 H 1.09001 * 109.47154 * 59.99789 * 3 2 1 30 30 H 0.97009 * 119.99630 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.46881 * 59.99595 * 12 2 1 32 32 H 1.08994 * 109.47273 * 180.02562 * 12 2 1 33 33 H 0.96993 * 119.99827 * 0.02562 * 13 12 2 34 34 H 1.09003 * 114.97865 * 291.95920 * 17 16 14 35 35 H 1.08998 * 114.98238 * 67.13147 * 17 16 14 36 36 H 0.96692 * 117.00753 * 180.02562 * 21 19 18 37 37 H 1.08998 * 114.93509 * 293.12908 * 22 16 14 38 38 H 1.09000 * 114.93511 * 68.15641 * 22 16 14 39 39 H 1.08998 * 114.97765 * 292.86383 * 23 16 14 40 40 H 1.08998 * 114.98202 * 68.03943 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6925 -1.5595 -1.1322 6 6 1.6491 -0.2764 -2.4818 7 7 0.9351 0.8209 -2.6071 8 14 2.1440 -1.2470 -3.9992 9 1 1.1618 -2.3360 -4.2323 10 1 2.1707 -0.3438 -5.1777 11 1 3.4931 -1.8328 -3.7938 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8770 -0.4914 3.6694 15 8 2.5734 -1.4781 3.7807 16 6 1.3742 0.2187 4.8999 17 6 1.6163 1.6804 5.3514 18 6 0.7128 1.1234 6.5106 19 6 0.2210 1.8184 7.7540 20 8 0.5343 1.4006 8.8436 21 8 -0.5651 2.9015 7.6511 22 6 1.6157 -0.1231 6.3863 23 6 -0.0849 0.4775 5.3506 24 1 -0.3632 0.4169 0.9393 25 1 -0.3633 0.6051 -0.8306 26 1 -0.3633 -1.0218 -0.1086 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 0.6651 1.1260 -3.4875 31 1 1.6767 -1.7489 1.2491 32 1 3.1300 -0.7209 1.2494 33 1 0.9939 0.7578 2.3564 34 1 2.6416 1.9082 5.6431 35 1 1.1594 2.4398 4.7169 36 1 -0.8553 3.3134 8.4764 37 1 1.1615 -1.0549 6.7232 38 1 2.6410 0.0162 6.7291 39 1 -0.6481 1.1618 4.7161 40 1 -0.6417 -0.4133 5.6414 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609672951.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:21 Heat of formation + Delta-G solvation = -35.041508 kcal Electronic energy + Delta-G solvation = -22132.765876 eV Core-core repulsion = 18723.171969 eV Total energy + Delta-G solvation = -3409.593907 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.49449 -40.04474 -38.73449 -36.42853 -36.34024 -33.31868 -30.92490 -27.48093 -26.16051 -26.09464 -25.76976 -25.62582 -25.04527 -22.89950 -20.29028 -19.01323 -18.64193 -18.19575 -17.54869 -16.05704 -15.93993 -15.52463 -15.10930 -14.93024 -14.61660 -14.47129 -14.37044 -13.74756 -12.98547 -12.90249 -12.73082 -12.23417 -12.01931 -11.88904 -11.65032 -11.50469 -11.41609 -11.23664 -11.01718 -10.89045 -10.72733 -10.63605 -10.58264 -10.41826 -10.24059 -9.67004 -9.64365 -9.30990 -8.83160 -8.51840 -8.36053 -6.05658 -4.14564 1.70514 2.52855 2.69849 3.27303 3.33962 3.36797 3.53283 3.74266 3.96138 3.98026 4.19877 4.36429 4.38186 4.85739 5.18579 5.21787 5.25445 5.30845 5.48064 5.56796 5.64606 5.65806 5.80765 6.10854 6.17508 6.27456 6.46608 6.71873 6.77518 6.88018 6.95008 6.97422 7.30986 7.51862 7.56795 7.66925 7.95670 7.97090 8.10469 8.34309 8.59248 8.85687 9.51159 10.96357 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.038446 B = 0.003376 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.118035 B = 8290.967155 C = 8697.672473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.131 3.869 13 N -0.707 5.707 14 C 0.566 3.434 15 O -0.541 6.541 16 C -0.152 4.152 17 C -0.076 4.076 18 C -0.156 4.156 19 C 0.547 3.453 20 O -0.506 6.506 21 O -0.507 6.507 22 C -0.061 4.061 23 C -0.076 4.076 24 H 0.007 0.993 25 H 0.081 0.919 26 H 0.029 0.971 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.399 0.601 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.414 0.586 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.839 5.336 15.736 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.009 3.991 13 N -0.357 5.357 14 C 0.349 3.651 15 O -0.418 6.418 16 C -0.155 4.155 17 C -0.114 4.114 18 C -0.157 4.157 19 C 0.389 3.611 20 O -0.394 6.394 21 O -0.319 6.319 22 C -0.098 4.098 23 C -0.113 4.113 24 H 0.026 0.974 25 H 0.100 0.900 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.235 0.765 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.273 0.727 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.195 4.435 15.556 16.489 hybrid contribution -0.261 0.191 -0.272 0.423 sum -3.456 4.626 15.284 16.339 Atomic orbital electron populations 1.21808 0.97675 1.00204 0.98989 1.18362 0.92811 0.92779 0.90514 1.21851 0.98636 0.98281 1.00046 1.20964 1.29461 1.14403 0.89917 0.92399 1.24867 0.94952 0.94755 0.98806 1.69823 1.37780 1.21364 1.23329 0.86597 0.79062 0.79918 0.82351 1.20615 1.21337 1.19954 1.21781 0.98292 0.95905 0.83139 1.46226 1.52152 1.31675 1.05598 1.18390 0.80360 0.83709 0.82611 1.90701 1.38344 1.26186 1.86619 1.23849 0.98645 0.97879 0.95177 1.24525 0.99332 0.94715 0.92805 1.23675 1.00790 0.99222 0.92055 1.21056 0.74396 0.77326 0.88296 1.90744 1.55162 1.64575 1.28907 1.84509 1.62739 1.42175 1.42507 1.23665 0.99305 0.95211 0.91644 1.24053 0.94215 1.00185 0.92872 0.97448 0.89987 0.95145 0.95414 0.89565 0.97556 0.92985 0.92450 0.92490 0.76521 0.89364 0.88736 0.72724 0.89459 0.89411 0.88706 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.03 37.16 0.30 -2.49 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.82 8.11 37.16 0.30 -2.52 16 4 C -0.51 -13.02 8.01 -34.44 -0.28 -13.29 16 5 H 0.06 1.50 7.75 -52.48 -0.41 1.09 16 6 C 0.07 1.75 5.13 -17.82 -0.09 1.66 16 7 N -0.88 -23.07 9.45 55.43 0.52 -22.55 16 8 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.13 2.66 4.50 -4.04 -0.02 2.65 16 13 N -0.71 -11.83 4.90 -60.29 -0.30 -12.13 16 14 C 0.57 9.33 7.94 -10.99 -0.09 9.24 16 15 O -0.54 -11.01 17.10 5.55 0.09 -10.92 16 16 C -0.15 -1.85 3.36 -172.27 -0.58 -2.43 16 17 C -0.08 -0.75 7.95 -24.74 -0.20 -0.94 16 18 C -0.16 -1.57 3.61 -171.00 -0.62 -2.19 16 19 C 0.55 5.57 8.44 36.01 0.30 5.88 16 20 O -0.51 -6.59 17.85 -18.75 -0.33 -6.92 16 21 O -0.51 -3.74 13.42 -39.25 -0.53 -4.27 16 22 C -0.06 -0.69 7.78 -26.71 -0.21 -0.89 16 23 C -0.08 -0.75 7.84 -25.97 -0.20 -0.95 16 24 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 25 H 0.08 1.96 6.25 -51.93 -0.32 1.64 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 2.08 6.10 -51.93 -0.32 1.77 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.40 5.96 6.16 -40.82 -0.25 5.71 16 34 H 0.09 0.82 7.91 -51.93 -0.41 0.41 16 35 H 0.09 0.81 7.97 -51.93 -0.41 0.40 16 36 H 0.41 1.16 9.10 45.56 0.41 1.57 16 37 H 0.09 0.97 7.95 -51.93 -0.41 0.56 16 38 H 0.09 0.97 7.91 -51.93 -0.41 0.56 16 39 H 0.09 0.82 7.97 -51.93 -0.41 0.40 16 40 H 0.09 0.82 7.93 -51.93 -0.41 0.40 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -30.40 332.21 -6.89 -37.29 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.89 Total: 4.24 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.45 Total: -5.12 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.23 Total: -34.67 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.77 Total: -22.11 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.40 -6.89 -37.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609672951.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.248 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds