Wall clock time and date at job start Tue Mar 31 2020 05:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.41265 * 2 1 4 4 O 1.21274 * 120.00448 * 242.23207 * 3 2 1 5 5 N 1.34781 * 119.99602 * 62.23388 * 3 2 1 6 6 C 1.47578 * 134.49257 * 354.73428 * 5 3 2 7 7 C 1.53941 * 86.11637 * 155.35779 * 6 5 3 8 8 O 1.42904 * 113.74141 * 269.25680 * 7 6 5 9 9 C 1.50699 * 113.74247 * 137.94979 * 7 6 5 10 10 H 1.08000 * 120.00412 * 359.97438 * 9 7 6 11 11 C 1.37882 * 120.00015 * 180.02562 * 9 7 6 12 12 N 1.31514 * 120.00058 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 119.99940 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47046 * 89.99714 * 13 11 9 15 15 H 1.48499 * 109.47013 * 209.99549 * 13 11 9 16 16 H 1.48496 * 109.46916 * 329.99587 * 13 11 9 17 17 C 1.47585 * 134.48850 * 174.72646 * 5 3 2 18 18 C 1.52954 * 109.41717 * 119.86435 * 2 1 3 19 19 C 1.53086 * 109.48033 * 183.71261 * 18 2 1 20 20 C 1.51272 * 108.49296 * 305.31217 * 19 18 2 21 21 O 1.20757 * 120.85307 * 231.33657 * 20 19 18 22 22 C 1.51276 * 118.29971 * 51.35599 * 20 19 18 23 23 C 1.52959 * 109.41428 * 240.14782 * 2 1 3 24 24 H 1.08996 * 109.47575 * 54.34497 * 1 2 3 25 25 H 1.08997 * 109.47363 * 174.34953 * 1 2 3 26 26 H 1.09003 * 109.47201 * 294.34909 * 1 2 3 27 27 H 1.09002 * 113.77380 * 41.05496 * 6 5 3 28 28 H 1.09003 * 113.86698 * 269.66586 * 6 5 3 29 29 H 0.96703 * 114.00089 * 179.97438 * 8 7 6 30 30 H 0.97000 * 120.00219 * 179.97438 * 12 11 9 31 31 H 1.09000 * 113.76177 * 90.34121 * 17 5 3 32 32 H 1.08992 * 113.77118 * 318.94332 * 17 5 3 33 33 H 1.09003 * 109.47817 * 303.61359 * 18 2 1 34 34 H 1.08992 * 109.48171 * 63.65048 * 18 2 1 35 35 H 1.08997 * 109.64112 * 185.62001 * 19 18 2 36 36 H 1.08993 * 109.81670 * 65.11105 * 19 18 2 37 37 H 1.08990 * 109.62803 * 188.93582 * 22 20 19 38 38 H 1.09004 * 109.62135 * 68.36714 * 22 20 19 39 39 H 1.09007 * 109.48123 * 296.34348 * 23 2 1 40 40 H 1.09004 * 109.48441 * 56.36438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0309 1.4214 0.0000 4 8 2.6939 1.8307 -0.9293 5 7 1.7419 2.2376 1.0329 6 6 0.9076 2.1173 2.2442 7 6 1.8248 3.1918 2.8557 8 8 2.9522 2.6573 3.5523 9 6 1.0867 4.2410 3.6466 10 1 0.0119 4.1905 3.7397 11 6 1.7834 5.2662 4.2505 12 7 3.0922 5.3281 4.1367 13 14 0.8686 6.5663 5.2314 14 1 0.7645 6.1350 6.6486 15 1 1.6074 7.8524 5.1584 16 1 -0.4933 6.7450 4.6670 17 6 2.1331 3.6107 1.4067 18 6 2.0384 -0.7183 1.2510 19 6 3.5665 -0.6386 1.2999 20 6 4.1172 -1.1858 0.0016 21 8 4.9738 -2.0370 0.0021 22 6 3.5679 -0.6391 -1.2975 23 6 2.0384 -0.7181 -1.2512 24 1 -0.3634 0.5990 -0.8350 25 1 -0.3634 -1.0226 -0.1012 26 1 -0.3634 0.4237 0.9363 27 1 0.9813 1.1462 2.7339 28 1 -0.1222 2.4463 2.1049 29 1 3.5312 3.3292 3.9377 30 1 3.5824 6.0495 4.5612 31 1 1.4637 4.3789 1.0196 32 1 3.1852 3.8320 1.2278 33 1 1.6227 -0.2410 2.1384 34 1 1.7292 -1.7630 1.2213 35 1 3.9378 -1.2332 2.1345 36 1 3.8786 0.3985 1.4217 37 1 3.9401 -1.2338 -2.1316 38 1 3.8774 0.3992 -1.4177 39 1 1.7291 -1.7630 -1.2216 40 1 1.6224 -0.2409 -2.1386 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638886949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:44 Heat of formation + Delta-G solvation = -96.395817 kcal Electronic energy + Delta-G solvation = -23654.647220 eV Core-core repulsion = 20242.392790 eV Total energy + Delta-G solvation = -3412.254430 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79339 -39.07348 -37.79637 -35.88116 -34.08317 -32.24151 -31.31084 -31.16858 -28.47642 -25.57898 -25.46127 -25.26476 -23.18918 -22.13979 -19.89037 -19.31336 -18.06243 -17.30920 -16.08250 -16.03315 -15.34841 -15.22981 -15.04063 -14.87732 -14.36560 -14.21502 -13.87984 -13.56786 -13.06508 -12.92811 -12.58427 -12.52880 -12.32840 -12.29759 -11.95525 -11.71524 -11.59448 -11.33681 -11.18528 -11.10389 -10.96332 -10.66918 -10.57893 -10.51061 -10.31863 -9.71022 -9.18827 -9.00813 -8.77448 -8.46547 -7.87910 -6.43298 -4.54410 2.12049 3.09298 3.11938 3.20429 3.22058 3.47546 4.14527 4.28497 4.53791 4.60183 4.78825 4.80868 5.07196 5.11101 5.33224 5.36540 5.45230 5.52208 5.57356 5.68014 5.75986 5.78055 5.85005 5.95078 5.98733 6.11949 6.14465 6.21791 6.26249 6.29627 6.40023 6.41408 6.67794 6.74807 7.05314 7.58932 7.64689 7.74934 8.42004 8.48235 8.69231 9.17050 9.39343 10.63057 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.005048 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.350662 B = 5545.551327 C = 5846.917385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C 0.539 3.461 4 O -0.559 6.559 5 N -0.626 5.626 6 C 0.099 3.901 7 C 0.240 3.760 8 O -0.574 6.574 9 C -0.539 4.539 10 H 0.071 0.929 11 C 0.073 3.927 12 N -0.896 5.896 13 Si 0.907 3.093 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.271 1.271 17 C 0.085 3.915 18 C -0.104 4.104 19 C -0.172 4.172 20 C 0.365 3.635 21 O -0.472 6.472 22 C -0.185 4.185 23 C -0.083 4.083 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.394 0.606 30 H 0.274 0.726 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.131 0.869 39 H 0.068 0.932 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 -8.352 -4.954 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 C 0.328 3.672 4 O -0.440 6.440 5 N -0.359 5.359 6 C -0.023 4.023 7 C 0.198 3.802 8 O -0.387 6.387 9 C -0.577 4.577 10 H 0.089 0.911 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.734 3.266 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.196 1.196 17 C -0.037 4.037 18 C -0.141 4.141 19 C -0.210 4.210 20 C 0.242 3.758 21 O -0.347 6.347 22 C -0.222 4.222 23 C -0.121 4.121 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.250 0.750 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.149 0.851 39 H 0.087 0.913 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.456 -9.152 -5.715 11.674 hybrid contribution -0.247 1.435 0.645 1.593 sum -4.703 -7.717 -5.071 10.363 Atomic orbital electron populations 1.21838 0.92288 1.02541 1.03070 1.20849 0.97370 0.93204 0.97098 1.19949 0.80207 0.86603 0.80434 1.90526 1.41834 1.76846 1.34760 1.50146 1.47344 1.16775 1.21592 1.23680 0.95607 1.00718 0.82291 1.19819 0.84403 0.88718 0.87215 1.86001 1.39493 1.39731 1.73470 1.21487 0.94378 1.08711 1.33172 0.91088 1.25071 0.95003 0.97708 0.95215 1.69310 1.06385 1.33853 1.44098 0.86343 0.79769 0.80267 0.80214 1.20249 1.20931 1.19578 1.24273 1.00186 0.81910 0.97325 1.21646 0.93865 1.00835 0.97763 1.22293 0.97074 1.04635 0.96997 1.25017 0.78838 0.78611 0.93291 1.90355 1.26956 1.27031 1.90332 1.22634 0.97075 1.06265 0.96243 1.21313 0.93890 0.99730 0.97137 0.92068 0.91588 0.91398 0.90714 0.89522 0.74955 0.91565 0.90387 0.91500 0.89188 0.90827 0.89152 0.87634 0.90019 0.85110 0.91292 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.28 37.16 0.31 -1.26 16 2 C -0.08 -1.12 0.53 -155.70 -0.08 -1.20 16 3 C 0.54 9.60 5.10 -10.98 -0.06 9.55 16 4 O -0.56 -11.46 14.26 5.56 0.08 -11.38 16 5 N -0.63 -11.79 3.51 -178.34 -0.63 -12.42 16 6 C 0.10 1.78 5.90 -2.98 -0.02 1.76 16 7 C 0.24 5.30 1.45 -90.85 -0.13 5.17 16 8 O -0.57 -13.60 13.50 -35.23 -0.48 -14.07 16 9 C -0.54 -12.76 8.62 -34.44 -0.30 -13.06 16 10 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.07 1.75 5.39 -17.82 -0.10 1.66 16 12 N -0.90 -22.26 11.08 55.43 0.61 -21.64 16 13 Si 0.91 18.88 29.54 -169.99 -5.02 13.86 16 14 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 C 0.09 1.84 8.23 -2.97 -0.02 1.81 16 18 C -0.10 -1.35 4.60 -26.71 -0.12 -1.48 16 19 C -0.17 -2.60 5.78 -27.56 -0.16 -2.76 16 20 C 0.37 5.78 6.72 -28.47 -0.19 5.59 16 21 O -0.47 -8.63 17.89 6.00 0.11 -8.52 16 22 C -0.18 -2.67 5.73 -27.49 -0.16 -2.82 16 23 C -0.08 -1.04 4.43 -26.64 -0.12 -1.16 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.76 6.45 -51.93 -0.33 0.43 16 27 H 0.07 1.23 5.60 -51.93 -0.29 0.94 16 28 H 0.09 1.42 8.09 -51.93 -0.42 1.00 16 29 H 0.39 9.80 6.42 45.56 0.29 10.09 16 30 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 31 H 0.08 1.66 8.09 -51.93 -0.42 1.24 16 32 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.09 1.22 5.14 -51.93 -0.27 0.95 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.11 1.86 7.33 -51.93 -0.38 1.47 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.13 2.19 5.45 -51.93 -0.28 1.91 16 39 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 315.68 15.07 4.76 4.76 Total: -1.00 -27.28 315.68 -6.74 -34.02 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.15 Total: 1.80 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.01 Total: -34.07 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.29 Total: -33.98 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.28 -6.74 -34.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638886949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.378 kcal (2) G-P(sol) polarization free energy of solvation -27.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds