Wall clock time and date at job start Tue Mar 31 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35987 * 117.00027 * 2 1 4 4 C 1.38671 * 120.04721 * 0.02562 * 3 2 1 5 5 C 1.38232 * 120.08842 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.90659 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47041 * 89.99842 * 6 5 4 8 8 C 1.46906 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47140 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99861 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00244 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99980 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46946 * 59.99897 * 13 11 9 15 15 H 1.48506 * 109.46938 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46921 * 299.99580 * 13 11 9 17 17 C 1.38229 * 120.18101 * 0.24627 * 5 4 3 18 18 C 1.38661 * 120.08576 * 359.45706 * 17 5 4 19 19 O 1.35998 * 120.04155 * 180.29818 * 18 17 5 20 20 C 1.42897 * 117.00435 * 0.26668 * 19 18 17 21 21 C 1.38978 * 119.91415 * 0.56267 * 18 17 5 22 22 O 1.36089 * 120.09182 * 179.68391 * 21 18 17 23 23 C 1.42899 * 117.00336 * 270.02854 * 22 21 18 24 24 H 1.08999 * 109.47120 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47023 * 300.00051 * 1 2 3 26 26 H 1.08999 * 109.47061 * 59.99957 * 1 2 3 27 27 H 1.07999 * 119.95256 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.46924 * 329.99754 * 6 5 4 29 29 H 1.08995 * 109.46962 * 209.99908 * 6 5 4 30 30 H 1.00904 * 110.99913 * 303.95016 * 7 6 5 31 31 H 1.09004 * 109.47040 * 299.99934 * 8 7 6 32 32 H 1.09000 * 109.47033 * 59.99886 * 8 7 6 33 33 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 34 34 H 1.08000 * 119.95384 * 179.72639 * 17 5 4 35 35 H 1.09009 * 109.46952 * 300.00604 * 20 19 18 36 36 H 1.09003 * 109.46896 * 59.99853 * 20 19 18 37 37 H 1.08995 * 109.47583 * 180.02562 * 20 19 18 38 38 H 1.09003 * 109.47048 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.46858 * 299.99907 * 23 22 21 40 40 H 1.08993 * 109.47618 * 59.99789 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2921 2.3753 0.0005 5 6 1.9188 3.6074 0.0000 6 6 1.0950 4.8694 0.0000 7 7 0.8279 5.2797 1.3850 8 6 0.0257 6.5098 1.4242 9 6 -0.2281 6.8985 2.8579 10 1 0.1666 6.2922 3.6598 11 6 -0.9651 8.0276 3.1458 12 7 -1.4462 8.7657 2.1693 13 14 -1.2791 8.5099 4.9230 14 1 0.0171 8.7429 5.6091 15 1 -2.0901 9.7533 4.9625 16 1 -2.0136 7.4172 5.6100 17 6 3.2989 3.6851 -0.0062 18 6 4.0604 2.5263 -0.0006 19 8 5.4181 2.6038 -0.0005 20 6 5.9933 3.9119 -0.0006 21 6 3.4343 1.2855 -0.0005 22 8 4.1781 0.1459 -0.0014 23 6 4.5322 -0.3967 -1.2751 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2136 2.3187 0.0014 28 1 0.1510 4.6870 -0.5135 29 1 1.6415 5.6599 -0.5142 30 1 0.3789 4.5382 1.9016 31 1 0.5652 7.3116 0.9200 32 1 -0.9258 6.3392 0.9204 33 1 -1.9650 9.5597 2.3719 34 1 3.7847 4.6496 -0.0111 35 1 5.6691 4.4513 -0.8906 36 1 5.6691 4.4513 0.8894 37 1 7.0803 3.8309 -0.0010 38 1 5.1225 -1.3019 -1.1329 39 1 3.6266 -0.6376 -1.8319 40 1 5.1172 0.3352 -1.8319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:24 Heat of formation + Delta-G solvation = -83.877428 kcal Electronic energy + Delta-G solvation = -21943.090473 eV Core-core repulsion = 18531.378882 eV Total energy + Delta-G solvation = -3411.711591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.75689 -38.99040 -37.73787 -37.03760 -34.79208 -32.52425 -30.52379 -29.60350 -27.85695 -27.65147 -27.14448 -25.98800 -23.97170 -21.96392 -21.62146 -21.13822 -18.43002 -17.27506 -17.16761 -16.51829 -16.38408 -16.22059 -15.53521 -15.00992 -14.87144 -14.69019 -14.56210 -14.43714 -14.08408 -13.50750 -13.19013 -12.82454 -12.38269 -12.21023 -12.13340 -11.81050 -11.60192 -11.54851 -11.35756 -11.29604 -11.00071 -10.74795 -10.63122 -10.50315 -9.93361 -9.92499 -9.25704 -8.52046 -8.14771 -8.10942 -7.38163 -6.07135 -4.09429 1.23398 1.43403 2.81100 3.31840 3.35559 3.38941 3.49371 3.62017 3.95874 4.40682 4.78797 4.92882 5.06656 5.08647 5.11377 5.16083 5.18411 5.20894 5.28838 5.35541 5.38409 5.42980 5.46077 5.49343 5.53062 5.67157 5.86842 6.02979 6.16885 6.23083 6.44390 6.71209 7.04367 7.15593 7.24996 7.34169 7.72359 7.73870 8.06289 8.30408 8.52621 8.99368 9.55719 11.03874 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.003771 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.337843 B = 7423.882430 C = 8246.944522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.147 3.853 4 C -0.229 4.229 5 C 0.009 3.991 6 C 0.092 3.908 7 N -0.682 5.682 8 C 0.194 3.806 9 C -0.516 4.516 10 H 0.062 0.938 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.900 3.100 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.211 4.211 18 C 0.147 3.853 19 O -0.307 6.307 20 C 0.024 3.976 21 C 0.017 3.983 22 O -0.313 6.313 23 C 0.036 3.964 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.133 0.867 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.331 0.669 31 H 0.029 0.971 32 H -0.012 1.012 33 H 0.262 0.738 34 H 0.137 0.863 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -15.528 -8.901 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.101 3.899 4 C -0.248 4.248 5 C 0.008 3.992 6 C -0.037 4.037 7 N -0.313 5.313 8 C 0.068 3.932 9 C -0.554 4.554 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.728 3.272 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.231 4.231 18 C 0.100 3.900 19 O -0.220 6.220 20 C -0.071 4.071 21 C -0.028 4.028 22 O -0.229 6.229 23 C -0.059 4.059 24 H 0.118 0.882 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.148 0.852 31 H 0.047 0.953 32 H 0.005 0.995 33 H 0.072 0.928 34 H 0.155 0.845 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.059 -15.450 -8.720 20.394 hybrid contribution -1.472 0.582 0.417 1.637 sum 8.587 -14.867 -8.303 19.071 Atomic orbital electron populations 1.23114 0.78222 1.03852 1.01822 1.86108 1.21343 1.26096 1.88379 1.18887 0.90514 0.84807 0.95709 1.20994 1.00171 0.91155 1.12502 1.19636 0.93155 0.94484 0.91888 1.20925 0.96698 0.92696 0.93406 1.60733 1.53576 1.08169 1.08793 1.19594 0.90028 0.86144 0.97470 1.21135 1.32564 1.09667 0.92074 0.91938 1.24984 0.95654 0.96266 0.97597 1.69949 1.36057 1.16251 1.31512 0.86527 0.78313 0.77726 0.84645 1.20101 1.21315 1.20221 1.20985 0.94045 0.97179 1.10856 1.18940 0.82851 0.92610 0.95549 1.86102 1.16754 1.30778 1.88322 1.23130 0.98902 0.83008 1.02022 1.16878 0.86300 0.84554 1.15095 1.86161 1.70155 1.38117 1.28451 1.22937 0.99316 0.98294 0.85367 0.88239 0.92174 0.92565 0.84948 0.95008 0.90524 0.85237 0.95265 0.99462 0.92804 0.84504 0.92521 0.91945 0.88277 0.89365 0.93992 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.19 10.28 -34.29 -0.35 -4.54 16 3 C 0.15 2.21 6.70 -39.15 -0.26 1.94 16 4 C -0.23 -3.34 8.69 -39.42 -0.34 -3.69 16 5 C 0.01 0.15 5.39 -104.63 -0.56 -0.42 16 6 C 0.09 1.61 5.81 -4.97 -0.03 1.58 16 7 N -0.68 -14.49 6.48 -116.34 -0.75 -15.24 16 8 C 0.19 5.00 5.44 -4.97 -0.03 4.98 16 9 C -0.52 -14.52 9.32 -34.44 -0.32 -14.84 16 10 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 13 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C -0.21 -3.18 8.68 -39.43 -0.34 -3.52 16 18 C 0.15 2.23 6.70 -39.15 -0.26 1.97 16 19 O -0.31 -4.28 10.28 -34.32 -0.35 -4.63 16 20 C 0.02 0.24 9.81 101.05 0.99 1.24 16 21 C 0.02 0.27 5.75 -39.03 -0.22 0.05 16 22 O -0.31 -4.84 9.98 -45.28 -0.45 -5.30 16 23 C 0.04 0.41 11.13 101.05 1.13 1.53 16 24 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 26 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 27 H 0.13 1.72 6.29 -52.49 -0.33 1.39 16 28 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.08 1.31 8.08 -51.93 -0.42 0.90 16 30 H 0.33 6.83 8.72 -39.29 -0.34 6.49 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 32 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.14 1.90 6.29 -52.49 -0.33 1.57 16 35 H 0.06 0.50 7.65 -51.92 -0.40 0.11 16 36 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 341.08 15.07 5.14 5.14 Total: -1.00 -32.52 341.08 -6.36 -38.87 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.94 Total: 1.42 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 0.64 Total: -6.46 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.02 Total: -41.08 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -1.16 Total: -14.46 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.52 -6.36 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.002 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds