Wall clock time and date at job start Tue Mar 31 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35987 * 117.00027 * 2 1 4 4 C 1.38671 * 120.04721 * 0.02562 * 3 2 1 5 5 C 1.38232 * 120.08842 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.90659 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47041 * 89.99842 * 6 5 4 8 8 C 1.46906 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47140 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99861 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00244 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99980 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46946 * 59.99897 * 13 11 9 15 15 H 1.48506 * 109.46938 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46921 * 299.99580 * 13 11 9 17 17 C 1.38229 * 120.18101 * 0.24627 * 5 4 3 18 18 C 1.38661 * 120.08576 * 359.45706 * 17 5 4 19 19 O 1.35998 * 120.04155 * 180.29818 * 18 17 5 20 20 C 1.42897 * 117.00435 * 0.26668 * 19 18 17 21 21 C 1.38978 * 119.91415 * 0.56267 * 18 17 5 22 22 O 1.36089 * 120.09182 * 179.68391 * 21 18 17 23 23 C 1.42899 * 117.00336 * 270.02854 * 22 21 18 24 24 H 1.08999 * 109.47120 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47023 * 300.00051 * 1 2 3 26 26 H 1.08999 * 109.47061 * 59.99957 * 1 2 3 27 27 H 1.07999 * 119.95256 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.46924 * 329.99754 * 6 5 4 29 29 H 1.08995 * 109.46962 * 209.99908 * 6 5 4 30 30 H 1.00904 * 110.99913 * 303.95016 * 7 6 5 31 31 H 1.09004 * 109.47040 * 299.99934 * 8 7 6 32 32 H 1.09000 * 109.47033 * 59.99886 * 8 7 6 33 33 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 34 34 H 1.08000 * 119.95384 * 179.72639 * 17 5 4 35 35 H 1.09009 * 109.46952 * 300.00604 * 20 19 18 36 36 H 1.09003 * 109.46896 * 59.99853 * 20 19 18 37 37 H 1.08995 * 109.47583 * 180.02562 * 20 19 18 38 38 H 1.09003 * 109.47048 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.46858 * 299.99907 * 23 22 21 40 40 H 1.08993 * 109.47618 * 59.99789 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2921 2.3753 0.0005 5 6 1.9188 3.6074 0.0000 6 6 1.0950 4.8694 0.0000 7 7 0.8279 5.2797 1.3850 8 6 0.0257 6.5098 1.4242 9 6 -0.2281 6.8985 2.8579 10 1 0.1666 6.2922 3.6598 11 6 -0.9651 8.0276 3.1458 12 7 -1.4462 8.7657 2.1693 13 14 -1.2791 8.5099 4.9230 14 1 0.0171 8.7429 5.6091 15 1 -2.0901 9.7533 4.9625 16 1 -2.0136 7.4172 5.6100 17 6 3.2989 3.6851 -0.0062 18 6 4.0604 2.5263 -0.0006 19 8 5.4181 2.6038 -0.0005 20 6 5.9933 3.9119 -0.0006 21 6 3.4343 1.2855 -0.0005 22 8 4.1781 0.1459 -0.0014 23 6 4.5322 -0.3967 -1.2751 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2136 2.3187 0.0014 28 1 0.1510 4.6870 -0.5135 29 1 1.6415 5.6599 -0.5142 30 1 0.3789 4.5382 1.9016 31 1 0.5652 7.3116 0.9200 32 1 -0.9258 6.3392 0.9204 33 1 -1.9650 9.5597 2.3719 34 1 3.7847 4.6496 -0.0111 35 1 5.6691 4.4513 -0.8906 36 1 5.6691 4.4513 0.8894 37 1 7.0803 3.8309 -0.0010 38 1 5.1225 -1.3019 -1.1329 39 1 3.6266 -0.6376 -1.8319 40 1 5.1172 0.3352 -1.8319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:23 Heat of formation + Delta-G solvation = -106.150211 kcal Electronic energy + Delta-G solvation = -21944.056293 eV Core-core repulsion = 18531.378882 eV Total energy + Delta-G solvation = -3412.677412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84621 -39.99486 -38.82988 -38.27845 -36.41976 -34.49747 -31.87463 -30.68989 -29.19521 -28.73287 -28.01587 -27.39707 -25.43406 -23.50904 -23.00265 -22.43333 -19.56125 -18.63380 -18.26534 -18.16503 -17.54188 -17.24050 -16.75132 -16.45723 -16.14467 -15.98694 -15.74432 -15.48925 -15.36516 -15.17243 -14.50507 -14.13244 -13.72494 -13.43565 -13.36369 -13.13655 -12.83160 -12.73169 -12.62407 -12.57218 -12.46988 -12.41915 -12.14521 -11.81807 -11.57397 -11.29394 -10.96961 -10.65828 -9.34013 -9.21733 -9.10766 -8.22805 -6.33768 0.06148 0.30418 1.42011 1.44976 1.53048 1.84774 2.35494 2.42214 2.67736 2.85831 3.10747 3.53742 3.80508 3.93063 3.97545 4.14449 4.32248 4.33379 4.37875 4.39384 4.41065 4.49969 4.51098 4.56786 4.66797 4.72470 4.74077 4.78826 4.94478 5.06789 5.10679 5.25810 5.34522 5.51143 5.60409 5.99966 6.02427 6.24111 6.39818 6.65935 6.67158 6.86240 7.37026 8.88306 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.003771 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.337843 B = 7423.882430 C = 8246.944522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.318 6.318 3 C 0.144 3.856 4 C -0.226 4.226 5 C -0.002 4.002 6 C 0.098 3.902 7 N -0.682 5.682 8 C 0.209 3.791 9 C -0.537 4.537 10 H 0.063 0.937 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.971 3.029 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.267 1.267 17 C -0.214 4.214 18 C 0.142 3.858 19 O -0.319 6.319 20 C 0.017 3.983 21 C 0.003 3.997 22 O -0.333 6.333 23 C 0.032 3.968 24 H 0.126 0.874 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.147 0.853 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.335 0.665 31 H 0.005 0.995 32 H -0.033 1.033 33 H 0.266 0.734 34 H 0.145 0.855 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.045 0.955 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.588 -16.404 -8.426 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.231 6.231 3 C 0.097 3.903 4 C -0.245 4.245 5 C -0.003 4.003 6 C -0.031 4.031 7 N -0.312 5.312 8 C 0.081 3.919 9 C -0.576 4.576 10 H 0.081 0.919 11 C -0.194 4.194 12 N -0.572 5.572 13 Si 0.795 3.205 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.192 1.192 17 C -0.233 4.233 18 C 0.096 3.904 19 O -0.232 6.232 20 C -0.077 4.077 21 C -0.042 4.042 22 O -0.250 6.250 23 C -0.062 4.062 24 H 0.144 0.856 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.164 0.836 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.152 0.848 31 H 0.023 0.977 32 H -0.016 1.016 33 H 0.074 0.926 34 H 0.162 0.838 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.144 0.856 38 H 0.130 0.870 39 H 0.064 0.936 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.376 -16.350 -8.257 21.051 hybrid contribution -1.510 0.762 0.192 1.702 sum 8.866 -15.588 -8.065 19.663 Atomic orbital electron populations 1.23418 0.76190 1.05847 1.02344 1.86100 1.23437 1.25472 1.88138 1.18937 0.90505 0.85353 0.95482 1.21092 1.00898 0.90674 1.11884 1.19456 0.93255 0.93929 0.93628 1.20879 0.97355 0.93696 0.91199 1.60582 1.52216 1.07016 1.11428 1.19241 0.89165 0.87427 0.96059 1.21499 1.32865 1.10115 0.93090 0.91920 1.25901 0.95199 0.96116 1.02211 1.70069 1.36622 1.16718 1.33834 0.85419 0.78409 0.77636 0.79047 1.19450 1.20728 1.19151 1.21063 0.93889 0.97653 1.10724 1.18993 0.83529 0.92440 0.95481 1.86091 1.16040 1.32908 1.88130 1.23407 1.00325 0.81657 1.02328 1.17180 0.86912 0.84987 1.15119 1.86101 1.70239 1.38078 1.30597 1.23129 0.99857 0.99105 0.84071 0.85621 0.92134 0.91500 0.83559 0.94323 0.90514 0.84772 0.97680 1.01571 0.92555 0.83781 0.91461 0.92351 0.85558 0.87017 0.93627 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.32 -8.30 10.28 -79.45 -0.82 -9.12 16 3 C 0.14 4.19 6.70 22.55 0.15 4.35 16 4 C -0.23 -6.41 8.69 22.37 0.19 -6.22 16 5 C 0.00 -0.06 5.39 -19.87 -0.11 -0.16 16 6 C 0.10 3.39 5.81 85.56 0.50 3.88 16 7 N -0.68 -29.06 6.48 -521.97 -3.38 -32.44 16 8 C 0.21 10.97 5.44 85.56 0.47 11.43 16 9 C -0.54 -30.42 9.32 25.60 0.24 -30.18 16 10 H 0.06 3.47 7.81 -2.91 -0.02 3.44 16 11 C 0.00 0.24 5.46 84.65 0.46 0.70 16 12 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 13 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 C -0.21 -6.34 8.68 22.37 0.19 -6.14 16 18 C 0.14 4.25 6.70 22.55 0.15 4.40 16 19 O -0.32 -8.60 10.28 -79.58 -0.82 -9.42 16 20 C 0.02 0.32 9.81 113.37 1.11 1.43 16 21 C 0.00 0.10 5.75 22.63 0.13 0.23 16 22 O -0.33 -10.06 9.98 -70.41 -0.70 -10.77 16 23 C 0.03 0.70 11.13 113.37 1.26 1.96 16 24 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.05 7.66 -2.38 -0.02 1.03 16 26 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 27 H 0.15 3.62 6.29 -2.91 -0.02 3.60 16 28 H 0.04 1.30 8.08 -2.39 -0.02 1.28 16 29 H 0.08 2.64 8.08 -2.39 -0.02 2.62 16 30 H 0.34 13.78 8.72 -89.69 -0.78 13.00 16 31 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 32 H -0.03 -1.86 8.14 -2.39 -0.02 -1.88 16 33 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.14 3.93 6.29 -2.91 -0.02 3.92 16 35 H 0.07 1.11 7.65 -2.38 -0.02 1.09 16 36 H 0.06 1.14 7.67 -2.39 -0.02 1.12 16 37 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -69.15 341.08 2.72 -66.43 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.26 Total: 17.59 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 5.86 Total: -12.93 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -3.10 Total: -87.73 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -2.34 Total: -29.31 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -69.15 2.72 -66.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.717 kcal (2) G-P(sol) polarization free energy of solvation -69.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds