Wall clock time and date at job start Tue Mar 31 2020 05:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35998 * 116.99742 * 2 1 4 4 C 1.38684 * 120.04732 * 359.97438 * 3 2 1 5 5 C 1.38214 * 120.08843 * 180.02562 * 4 3 2 6 6 C 1.38249 * 120.18220 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.95834 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.46963 * 260.02488 * 7 6 5 9 9 C 1.46900 * 110.99783 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46995 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00211 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00201 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99634 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00305 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47154 * 59.99646 * 14 12 10 16 16 H 1.48499 * 109.47104 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47002 * 299.99761 * 14 12 10 18 18 C 1.38652 * 120.08512 * 0.02562 * 6 5 4 19 19 O 1.35999 * 120.03967 * 179.97438 * 18 6 5 20 20 C 1.42902 * 116.99648 * 264.26376 * 19 18 6 21 21 C 1.38964 * 120.04484 * 180.30106 * 3 2 1 22 22 O 1.36098 * 120.08552 * 0.02562 * 21 3 2 23 23 C 1.42902 * 116.99979 * 271.82866 * 22 21 3 24 24 H 1.08993 * 109.46914 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 300.00261 * 1 2 3 26 26 H 1.09002 * 109.46832 * 60.00059 * 1 2 3 27 27 H 1.07997 * 119.95826 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.90439 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46607 * 20.01824 * 7 6 5 30 30 H 1.08996 * 109.46838 * 140.02038 * 7 6 5 31 31 H 1.00893 * 111.00388 * 56.04169 * 8 7 6 32 32 H 1.08999 * 109.47151 * 299.99434 * 9 8 7 33 33 H 1.08996 * 109.47476 * 59.99903 * 9 8 7 34 34 H 0.97005 * 119.99574 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.46962 * 176.36475 * 20 19 18 36 36 H 1.09000 * 109.47223 * 296.36161 * 20 19 18 37 37 H 1.08997 * 109.47523 * 56.36328 * 20 19 18 38 38 H 1.08998 * 109.46846 * 55.48068 * 23 22 21 39 39 H 1.08999 * 109.47218 * 175.47691 * 23 22 21 40 40 H 1.09000 * 109.47400 * 295.47717 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3755 -0.0005 5 6 1.9185 3.6074 -0.0011 6 6 3.2988 3.6852 -0.0016 7 6 3.9767 5.0312 -0.0028 8 7 4.4108 5.3596 -1.3672 9 6 5.0779 6.6678 -1.4068 10 6 5.5086 6.9694 -2.8191 11 1 5.3072 6.2601 -3.6083 12 6 6.1597 8.1510 -3.1039 13 7 6.4044 9.0150 -2.1430 14 14 6.6941 8.5246 -4.8543 15 1 5.5033 8.5484 -5.7411 16 1 7.3684 9.8470 -4.8944 17 1 7.6363 7.4749 -5.3189 18 6 4.0603 2.5265 -0.0021 19 8 5.4181 2.6041 -0.0032 20 6 6.0720 2.5140 -1.2706 21 6 3.4341 1.2857 -0.0063 22 8 4.1780 0.1460 -0.0130 23 6 4.5045 -0.4231 1.2564 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2135 2.3190 -0.0014 28 1 1.3281 4.5118 -0.0019 29 1 3.2778 5.7902 0.3488 30 1 4.8437 5.0018 0.6572 31 1 3.6343 5.3297 -2.0107 32 1 4.3871 7.4384 -1.0649 33 1 5.9526 6.6494 -0.7567 34 1 6.8621 9.8464 -2.3434 35 1 7.1446 2.6545 -1.1369 36 1 5.8857 1.5326 -1.7067 37 1 5.6845 3.2863 -1.9351 38 1 3.5893 -0.6011 1.8210 39 1 5.0288 -1.3670 1.1074 40 1 5.1445 0.2647 1.8092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:25 Heat of formation + Delta-G solvation = -102.375827 kcal Electronic energy + Delta-G solvation = -22382.098694 eV Core-core repulsion = 18969.584952 eV Total energy + Delta-G solvation = -3412.513742 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78836 -39.81894 -38.76815 -37.72743 -36.58356 -34.51429 -31.68190 -31.08215 -29.08605 -28.17887 -27.89184 -27.20774 -25.60961 -23.46375 -23.23468 -22.16110 -19.56533 -18.66394 -18.34189 -18.11472 -17.24335 -17.12490 -16.74420 -16.29995 -16.14841 -15.92107 -15.57792 -15.37172 -15.18581 -15.02591 -14.44174 -14.20480 -13.68340 -13.55858 -13.28622 -13.17261 -12.87370 -12.70854 -12.58486 -12.55565 -12.32741 -12.10930 -11.96694 -11.79849 -11.36438 -11.29508 -10.63661 -10.58274 -9.64276 -9.20558 -9.03170 -8.20185 -6.31158 -0.00066 0.19329 1.42555 1.45829 1.53712 2.08459 2.34698 2.42074 2.79397 3.09950 3.13297 3.66803 3.89815 3.92355 4.05970 4.23717 4.35697 4.41710 4.43156 4.43853 4.46944 4.54417 4.59427 4.68744 4.75580 4.76813 4.80068 5.00177 5.06601 5.11007 5.16526 5.30019 5.41479 5.47597 5.63009 6.03433 6.10562 6.39123 6.44981 6.71706 6.72271 6.90616 7.39591 8.91054 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025092 B = 0.003922 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.634017 B = 7137.608150 C = 7580.107560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.115 3.885 4 C -0.193 4.193 5 C -0.061 4.061 6 C -0.131 4.131 7 C 0.111 3.889 8 N -0.676 5.676 9 C 0.212 3.788 10 C -0.532 4.532 11 H 0.064 0.936 12 C 0.003 3.997 13 N -0.934 5.934 14 Si 0.971 3.029 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.124 3.876 19 O -0.344 6.344 20 C 0.047 3.953 21 C 0.018 3.982 22 O -0.339 6.339 23 C 0.037 3.963 24 H 0.120 0.880 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.170 0.830 28 H 0.154 0.846 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.334 0.666 32 H -0.036 1.036 33 H -0.002 1.002 34 H 0.265 0.735 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.112 0.888 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.554 -18.320 5.974 22.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.069 3.931 4 C -0.211 4.211 5 C -0.080 4.080 6 C -0.132 4.132 7 C -0.017 4.017 8 N -0.306 5.306 9 C 0.084 3.916 10 C -0.570 4.570 11 H 0.083 0.917 12 C -0.195 4.195 13 N -0.574 5.574 14 Si 0.795 3.205 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.079 3.921 19 O -0.261 6.261 20 C -0.047 4.047 21 C -0.027 4.027 22 O -0.256 6.256 23 C -0.057 4.057 24 H 0.138 0.862 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.187 0.813 28 H 0.171 0.829 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.151 0.849 32 H -0.019 1.019 33 H 0.016 0.984 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.131 0.869 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.601 -18.776 6.068 22.890 hybrid contribution -0.360 1.318 -0.419 1.429 sum -11.961 -17.458 5.649 21.903 Atomic orbital electron populations 1.23441 0.76055 1.05803 1.02661 1.86128 1.23686 1.25632 1.88338 1.19294 0.90663 0.86028 0.97147 1.21425 1.01602 0.90349 1.07738 1.21078 0.92328 0.98802 0.95789 1.20057 0.94214 0.94041 1.04911 1.20574 0.97623 0.91700 0.91846 1.60551 1.31679 1.32490 1.05896 1.19176 0.92130 0.84089 0.96167 1.21481 1.37587 1.03336 0.94642 0.91733 1.25917 0.95833 0.95856 1.01938 1.70090 1.42744 1.10174 1.34433 0.85415 0.78716 0.77248 0.79086 1.19072 1.20923 1.19420 1.18710 0.83866 0.90642 0.98867 1.85829 1.15183 1.93545 1.31579 1.23019 0.97438 1.00620 0.83584 1.18481 0.87722 0.86104 1.10406 1.86016 1.70814 1.37817 1.30933 1.23104 0.99972 0.98774 0.83882 0.86203 0.91097 0.91461 0.81298 0.82861 0.94411 0.92290 0.84910 1.01881 0.98392 0.92666 0.88534 0.93495 0.92559 0.93214 0.86949 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 16 2 O -0.32 -7.40 10.28 -79.57 -0.82 -8.22 16 3 C 0.12 3.02 6.70 22.55 0.15 3.17 16 4 C -0.19 -4.16 9.04 22.37 0.20 -3.96 16 5 C -0.06 -1.54 9.66 22.27 0.22 -1.32 16 6 C -0.13 -4.23 5.41 -19.76 -0.11 -4.34 16 7 C 0.11 4.19 5.47 85.56 0.47 4.65 16 8 N -0.68 -29.32 5.43 -522.00 -2.83 -32.15 16 9 C 0.21 11.39 5.44 85.56 0.47 11.86 16 10 C -0.53 -30.25 9.32 25.60 0.24 -30.01 16 11 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 12 C 0.00 0.16 5.46 84.65 0.46 0.62 16 13 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 14 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 C 0.12 4.25 5.71 22.55 0.13 4.38 16 19 O -0.34 -12.75 9.43 -79.61 -0.75 -13.50 16 20 C 0.05 1.62 11.13 113.37 1.26 2.88 16 21 C 0.02 0.56 5.75 22.62 0.13 0.69 16 22 O -0.34 -10.50 9.99 -70.52 -0.70 -11.21 16 23 C 0.04 0.85 11.13 113.37 1.26 2.12 16 24 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 26 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 27 H 0.17 2.33 6.29 -2.91 -0.02 2.31 16 28 H 0.15 3.11 8.03 -2.91 -0.02 3.09 16 29 H 0.04 1.34 8.00 -2.39 -0.02 1.32 16 30 H 0.06 2.42 7.85 -2.39 -0.02 2.41 16 31 H 0.33 13.76 8.72 -89.70 -0.78 12.98 16 32 H -0.04 -2.09 8.14 -2.39 -0.02 -2.11 16 33 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 35 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 2.16 7.06 -2.39 -0.02 2.15 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -70.06 341.81 3.46 -66.61 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.26 Total: 16.48 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 5.99 Total: -7.99 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -2.55 Total: -88.48 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -2.27 Total: -32.92 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -70.06 3.46 -66.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.767 kcal (2) G-P(sol) polarization free energy of solvation -70.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds