Wall clock time and date at job start Tue Mar 31 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35972 * 116.99931 * 2 1 4 4 C 1.38709 * 119.98418 * 0.02562 * 3 2 1 5 5 C 1.38497 * 119.95196 * 179.97438 * 4 3 2 6 6 O 1.35988 * 120.04646 * 179.97438 * 5 4 3 7 7 C 1.42898 * 117.00113 * 0.02562 * 6 5 4 8 8 C 1.39176 * 119.90957 * 0.02562 * 5 4 3 9 9 O 1.36077 * 120.02058 * 179.97438 * 8 5 4 10 10 C 1.42897 * 117.00200 * 179.97438 * 9 8 5 11 11 C 1.38496 * 119.96305 * 359.72220 * 8 5 4 12 12 C 1.38271 * 120.05114 * 0.54441 * 11 8 5 13 13 C 1.50697 * 119.95663 * 179.72850 * 12 11 8 14 14 N 1.46905 * 109.47066 * 259.73048 * 13 12 11 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00162 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00023 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99532 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00003 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46907 * 60.00117 * 20 18 16 22 22 H 1.48504 * 109.47065 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47302 * 300.00070 * 20 18 16 24 24 H 1.09007 * 109.46909 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47052 * 299.99893 * 1 2 3 26 26 H 1.08989 * 109.47322 * 59.99936 * 1 2 3 27 27 H 1.08007 * 120.02292 * 359.96109 * 4 3 2 28 28 H 1.08993 * 109.47220 * 180.02562 * 7 6 5 29 29 H 1.09009 * 109.46958 * 299.99839 * 7 6 5 30 30 H 1.09000 * 109.47442 * 59.99748 * 7 6 5 31 31 H 1.09006 * 109.47030 * 300.00031 * 10 9 8 32 32 H 1.09002 * 109.47099 * 59.99657 * 10 9 8 33 33 H 1.09001 * 109.46993 * 179.97438 * 10 9 8 34 34 H 1.08000 * 119.97315 * 180.28064 * 11 8 5 35 35 H 1.09001 * 109.47558 * 139.73211 * 13 12 11 36 36 H 1.08998 * 109.47216 * 19.72873 * 13 12 11 37 37 H 1.00901 * 110.99869 * 56.04737 * 14 13 12 38 38 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 39 39 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 40 40 H 0.97001 * 119.99132 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2905 2.3746 0.0005 5 6 1.9199 3.6083 0.0011 6 8 1.1809 4.7498 0.0011 7 6 -0.2405 4.6024 0.0011 8 6 3.3099 3.6782 0.0005 9 8 3.9307 4.8891 0.0005 10 6 5.3597 4.8856 0.0005 11 6 4.0610 2.5146 0.0053 12 6 3.4310 1.2837 -0.0008 13 6 4.2504 0.0190 -0.0018 14 7 4.3143 -0.5220 -1.3662 15 6 5.1065 -1.7584 -1.4056 16 6 5.1500 -2.2822 -2.8179 17 1 4.6398 -1.7501 -3.6072 18 6 5.8403 -3.4415 -3.1024 19 7 6.4611 -4.0897 -2.1411 20 14 5.8936 -4.0911 -4.8529 21 1 6.5172 -3.0756 -5.7389 22 1 6.6945 -5.3410 -4.8928 23 1 4.5120 -4.3729 -5.3186 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.2119 2.3182 0.0003 28 1 -0.7079 5.5870 0.0006 29 1 -0.5489 4.0538 -0.8890 30 1 -0.5489 4.0538 0.8910 31 1 5.7218 4.3708 0.8906 32 1 5.7218 4.3708 -0.8894 33 1 5.7255 5.9124 0.0001 34 1 5.1397 2.5686 0.0094 35 1 3.7875 -0.7144 0.6585 36 1 5.2585 0.2389 0.3494 37 1 4.6805 0.1632 -2.0100 38 1 6.1207 -1.5512 -1.0640 39 1 4.6491 -2.5039 -0.7551 40 1 6.9470 -4.9050 -2.3413 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:29 Heat of formation + Delta-G solvation = -80.579818 kcal Electronic energy + Delta-G solvation = -22070.690739 eV Core-core repulsion = 18659.122143 eV Total energy + Delta-G solvation = -3411.568596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.74210 -38.87408 -38.42114 -36.36370 -34.73768 -32.49280 -30.56755 -29.65330 -28.16387 -27.31859 -27.20844 -25.86357 -23.91941 -21.84290 -21.51112 -20.97007 -18.73880 -17.45464 -17.16348 -16.45452 -16.16309 -15.93485 -15.40921 -15.25564 -14.76437 -14.68187 -14.60985 -14.36792 -13.89311 -13.34402 -13.15057 -12.78986 -12.51294 -12.25542 -12.08448 -11.60630 -11.55423 -11.50278 -11.30692 -11.22265 -11.15021 -10.86212 -10.63531 -10.53191 -10.08186 -9.82042 -9.15588 -8.59448 -8.42760 -7.35445 -7.16281 -5.98479 -3.99860 1.30092 1.59833 3.19609 3.31692 3.36565 3.39945 3.43567 3.52878 3.76208 4.47506 4.72530 4.87700 4.95236 5.00050 5.02551 5.17604 5.19304 5.23050 5.24518 5.28350 5.32209 5.37260 5.48166 5.52814 5.56202 5.65443 5.87456 6.05779 6.20385 6.36174 6.55088 6.72736 7.02074 7.32004 7.44131 7.48823 7.70191 7.84233 8.18865 8.48498 8.68637 9.09419 9.64523 11.12649 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019229 B = 0.004020 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.791535 B = 6963.512921 C = 7760.570016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.289 6.289 3 C 0.157 3.843 4 C -0.266 4.266 5 C 0.129 3.871 6 O -0.306 6.306 7 C 0.027 3.973 8 C 0.058 3.942 9 O -0.311 6.311 10 C 0.027 3.973 11 C -0.128 4.128 12 C -0.099 4.099 13 C 0.109 3.891 14 N -0.678 5.678 15 C 0.195 3.805 16 C -0.511 4.511 17 H 0.061 0.939 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.100 0.900 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.138 0.862 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.076 0.924 36 H 0.024 0.976 37 H 0.326 0.674 38 H -0.015 1.015 39 H 0.029 0.971 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.785 16.931 6.994 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.201 6.201 3 C 0.110 3.890 4 C -0.285 4.285 5 C 0.083 3.917 6 O -0.219 6.219 7 C -0.068 4.068 8 C 0.013 3.987 9 O -0.225 6.225 10 C -0.069 4.069 11 C -0.148 4.148 12 C -0.101 4.101 13 C -0.020 4.020 14 N -0.309 5.309 15 C 0.069 3.931 16 C -0.550 4.550 17 H 0.079 0.921 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.727 3.273 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 H 0.118 0.882 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.156 0.844 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.157 0.843 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.143 0.857 38 H 0.003 0.997 39 H 0.047 0.953 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.215 16.596 7.086 21.246 hybrid contribution 0.699 -0.284 -0.826 1.119 sum -10.515 16.312 6.259 20.392 Atomic orbital electron populations 1.23025 0.79422 1.03932 1.00449 1.86306 1.20228 1.25666 1.87925 1.18409 0.91391 0.83711 0.95505 1.21039 1.00291 0.91081 1.16091 1.17847 0.88052 0.85219 1.00542 1.86157 1.18457 1.28303 1.89026 1.23029 0.79076 1.03590 1.01133 1.17986 0.88811 0.85137 1.06752 1.86126 1.20608 1.25861 1.89931 1.23023 0.78916 1.03552 1.01360 1.20831 0.99897 0.90130 1.03905 1.19113 0.90857 0.95300 1.04787 1.20624 0.95448 0.91922 0.94005 1.60668 1.58520 1.07912 1.03772 1.19555 0.89863 0.86181 0.97548 1.21156 1.31438 1.08532 0.93890 0.92065 1.24981 0.95494 0.96717 0.97380 1.69960 1.34117 1.17799 1.31998 0.86550 0.78062 0.78050 0.84654 1.20311 1.21375 1.20188 0.88202 0.93395 0.93014 0.84423 0.88368 0.92808 0.92922 0.92876 0.92661 0.88558 0.84279 0.90530 0.95763 0.85734 0.99721 0.95304 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.30 16 2 O -0.29 -4.75 9.72 -19.65 -0.19 -4.94 16 3 C 0.16 2.53 6.66 -39.25 -0.26 2.26 16 4 C -0.27 -3.66 8.02 -39.31 -0.32 -3.98 16 5 C 0.13 1.89 6.70 -39.14 -0.26 1.63 16 6 O -0.31 -4.12 10.28 -34.26 -0.35 -4.47 16 7 C 0.03 0.23 9.81 101.05 0.99 1.22 16 8 C 0.06 0.87 6.70 -39.14 -0.26 0.61 16 9 O -0.31 -4.41 10.28 -34.54 -0.36 -4.76 16 10 C 0.03 0.27 9.81 101.05 0.99 1.26 16 11 C -0.13 -1.92 8.65 -39.47 -0.34 -2.26 16 12 C -0.10 -1.67 5.41 -104.46 -0.56 -2.23 16 13 C 0.11 2.09 5.47 -4.97 -0.03 2.06 16 14 N -0.68 -15.32 6.48 -116.34 -0.75 -16.07 16 15 C 0.19 5.26 5.44 -4.98 -0.03 5.23 16 16 C -0.51 -14.84 9.32 -34.44 -0.32 -15.16 16 17 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 20 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 26 H 0.05 0.52 7.66 -51.94 -0.40 0.12 16 27 H 0.14 1.50 4.53 -52.48 -0.24 1.26 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.42 7.66 -51.92 -0.40 0.02 16 30 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.05 0.48 7.65 -51.93 -0.40 0.09 16 32 H 0.05 0.53 7.67 -51.93 -0.40 0.14 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.14 1.82 6.26 -52.49 -0.33 1.49 16 35 H 0.08 1.53 7.84 -51.93 -0.41 1.12 16 36 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 37 H 0.33 7.12 8.72 -39.29 -0.34 6.78 16 38 H -0.01 -0.42 8.14 -51.93 -0.42 -0.85 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -33.97 336.31 -6.15 -40.12 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.78 Total: 1.09 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 0.49 Total: -6.53 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.02 Total: -42.58 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.90 Total: -14.18 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.97 -6.15 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.461 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds