Wall clock time and date at job start Tue Mar 31 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35972 * 116.99931 * 2 1 4 4 C 1.38709 * 119.98418 * 0.02562 * 3 2 1 5 5 C 1.38497 * 119.95196 * 179.97438 * 4 3 2 6 6 O 1.35988 * 120.04646 * 179.97438 * 5 4 3 7 7 C 1.42898 * 117.00113 * 0.02562 * 6 5 4 8 8 C 1.39176 * 119.90957 * 0.02562 * 5 4 3 9 9 O 1.36077 * 120.02058 * 179.97438 * 8 5 4 10 10 C 1.42897 * 117.00200 * 179.97438 * 9 8 5 11 11 C 1.38496 * 119.96305 * 359.72220 * 8 5 4 12 12 C 1.38271 * 120.05114 * 0.54441 * 11 8 5 13 13 C 1.50697 * 119.95663 * 179.72850 * 12 11 8 14 14 N 1.46905 * 109.47066 * 259.73048 * 13 12 11 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00162 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00023 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99532 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00003 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46907 * 60.00117 * 20 18 16 22 22 H 1.48504 * 109.47065 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47302 * 300.00070 * 20 18 16 24 24 H 1.09007 * 109.46909 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47052 * 299.99893 * 1 2 3 26 26 H 1.08989 * 109.47322 * 59.99936 * 1 2 3 27 27 H 1.08007 * 120.02292 * 359.96109 * 4 3 2 28 28 H 1.08993 * 109.47220 * 180.02562 * 7 6 5 29 29 H 1.09009 * 109.46958 * 299.99839 * 7 6 5 30 30 H 1.09000 * 109.47442 * 59.99748 * 7 6 5 31 31 H 1.09006 * 109.47030 * 300.00031 * 10 9 8 32 32 H 1.09002 * 109.47099 * 59.99657 * 10 9 8 33 33 H 1.09001 * 109.46993 * 179.97438 * 10 9 8 34 34 H 1.08000 * 119.97315 * 180.28064 * 11 8 5 35 35 H 1.09001 * 109.47558 * 139.73211 * 13 12 11 36 36 H 1.08998 * 109.47216 * 19.72873 * 13 12 11 37 37 H 1.00901 * 110.99869 * 56.04737 * 14 13 12 38 38 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 39 39 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 40 40 H 0.97001 * 119.99132 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2905 2.3746 0.0005 5 6 1.9199 3.6083 0.0011 6 8 1.1809 4.7498 0.0011 7 6 -0.2405 4.6024 0.0011 8 6 3.3099 3.6782 0.0005 9 8 3.9307 4.8891 0.0005 10 6 5.3597 4.8856 0.0005 11 6 4.0610 2.5146 0.0053 12 6 3.4310 1.2837 -0.0008 13 6 4.2504 0.0190 -0.0018 14 7 4.3143 -0.5220 -1.3662 15 6 5.1065 -1.7584 -1.4056 16 6 5.1500 -2.2822 -2.8179 17 1 4.6398 -1.7501 -3.6072 18 6 5.8403 -3.4415 -3.1024 19 7 6.4611 -4.0897 -2.1411 20 14 5.8936 -4.0911 -4.8529 21 1 6.5172 -3.0756 -5.7389 22 1 6.6945 -5.3410 -4.8928 23 1 4.5120 -4.3729 -5.3186 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.2119 2.3182 0.0003 28 1 -0.7079 5.5870 0.0006 29 1 -0.5489 4.0538 -0.8890 30 1 -0.5489 4.0538 0.8910 31 1 5.7218 4.3708 0.8906 32 1 5.7218 4.3708 -0.8894 33 1 5.7255 5.9124 0.0001 34 1 5.1397 2.5686 0.0094 35 1 3.7875 -0.7144 0.6585 36 1 5.2585 0.2389 0.3494 37 1 4.6805 0.1632 -2.0100 38 1 6.1207 -1.5512 -1.0640 39 1 4.6491 -2.5039 -0.7551 40 1 6.9470 -4.9050 -2.3413 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:28 Heat of formation + Delta-G solvation = -105.182457 kcal Electronic energy + Delta-G solvation = -22071.757590 eV Core-core repulsion = 18659.122143 eV Total energy + Delta-G solvation = -3412.635447 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.82516 -39.95253 -39.39765 -37.72610 -36.34867 -34.52420 -31.97878 -30.69880 -29.23924 -28.75416 -28.05127 -27.18267 -25.44789 -23.46006 -22.88751 -22.31697 -19.78556 -18.73912 -18.32650 -18.21298 -17.18546 -17.12561 -16.67873 -16.41042 -16.11689 -16.00220 -15.72163 -15.58636 -15.20058 -15.06090 -14.61916 -13.99645 -13.75648 -13.52929 -13.35658 -13.05741 -12.88753 -12.68638 -12.56407 -12.45198 -12.41619 -12.31703 -12.12100 -12.04588 -11.76126 -11.32014 -11.07357 -10.64247 -9.70079 -9.06455 -8.47682 -8.20304 -6.31918 0.16968 0.44023 1.41617 1.45593 1.53646 2.29045 2.35265 2.41146 2.52414 2.60955 3.12192 3.63118 3.75250 3.87130 4.01574 4.15208 4.29953 4.38454 4.39492 4.42449 4.43239 4.43658 4.47870 4.50572 4.65856 4.72473 4.75585 4.76589 4.99159 5.01333 5.10522 5.27977 5.34761 5.54670 5.62597 6.03315 6.08046 6.40472 6.47842 6.66043 6.73530 6.90280 7.38654 8.90765 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019229 B = 0.004020 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.791535 B = 6963.512921 C = 7760.570016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.146 3.854 4 C -0.257 4.257 5 C 0.128 3.872 6 O -0.322 6.322 7 C 0.015 3.985 8 C 0.047 3.953 9 O -0.325 6.325 10 C 0.018 3.982 11 C -0.124 4.124 12 C -0.125 4.125 13 C 0.117 3.883 14 N -0.677 5.677 15 C 0.211 3.789 16 C -0.535 4.535 17 H 0.062 0.938 18 C 0.002 3.998 19 N -0.934 5.934 20 Si 0.974 3.026 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.269 1.269 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.167 0.833 28 H 0.122 0.878 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.121 0.879 34 H 0.152 0.848 35 H 0.061 0.939 36 H 0.030 0.970 37 H 0.331 0.669 38 H -0.037 1.037 39 H -0.001 1.001 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 18.236 6.113 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.099 3.901 4 C -0.276 4.276 5 C 0.082 3.918 6 O -0.236 6.236 7 C -0.079 4.079 8 C 0.002 3.998 9 O -0.240 6.240 10 C -0.076 4.076 11 C -0.143 4.143 12 C -0.127 4.127 13 C -0.012 4.012 14 N -0.307 5.307 15 C 0.083 3.917 16 C -0.573 4.573 17 H 0.080 0.920 18 C -0.196 4.196 19 N -0.574 5.574 20 Si 0.798 3.202 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.194 1.194 24 H 0.127 0.873 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.184 0.816 28 H 0.140 0.860 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.169 0.831 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.148 0.852 38 H -0.020 1.020 39 H 0.017 0.983 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.465 17.932 6.214 22.706 hybrid contribution 0.997 -0.579 -0.477 1.248 sum -11.468 17.353 5.736 21.577 Atomic orbital electron populations 1.23329 0.77008 1.05247 1.02159 1.86256 1.22974 1.26289 1.88081 1.18563 0.91368 0.84437 0.95692 1.21209 1.01566 0.89882 1.14972 1.18075 0.88347 0.85911 0.99469 1.86148 1.20835 1.27929 1.88661 1.23398 0.76609 1.05661 1.02253 1.18164 0.89426 0.85391 1.06807 1.86109 1.22633 1.25438 1.89847 1.23303 0.77027 1.05440 1.01862 1.20881 1.00591 0.89572 1.03297 1.18945 0.91323 0.94542 1.07839 1.20496 0.96161 0.92860 0.91646 1.60535 1.57189 1.06934 1.06066 1.19198 0.88814 0.87450 0.96246 1.21490 1.31950 1.09259 0.94626 0.91966 1.25948 0.94692 0.96767 1.02191 1.70092 1.34619 1.18246 1.34469 0.85376 0.78424 0.77605 0.78819 1.19077 1.20635 1.19408 0.87288 0.91019 0.91807 0.81559 0.85973 0.91863 0.91506 0.92034 0.92469 0.86064 0.83059 0.92066 0.95220 0.85175 1.01958 0.98329 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.47 16 2 O -0.32 -10.57 9.72 -93.24 -0.91 -11.48 16 3 C 0.15 4.65 6.66 22.48 0.15 4.80 16 4 C -0.26 -6.67 8.02 22.44 0.18 -6.49 16 5 C 0.13 3.57 6.70 22.56 0.15 3.72 16 6 O -0.32 -8.00 10.28 -79.50 -0.82 -8.82 16 7 C 0.01 0.21 9.81 113.37 1.11 1.33 16 8 C 0.05 1.38 6.70 22.56 0.15 1.53 16 9 O -0.33 -8.85 10.28 -80.50 -0.83 -9.67 16 10 C 0.02 0.34 9.81 113.37 1.11 1.45 16 11 C -0.12 -3.68 8.65 22.34 0.19 -3.49 16 12 C -0.13 -4.25 5.41 -19.76 -0.11 -4.36 16 13 C 0.12 4.65 5.47 85.55 0.47 5.11 16 14 N -0.68 -31.47 6.48 -521.98 -3.38 -34.85 16 15 C 0.21 11.81 5.44 85.56 0.47 12.27 16 16 C -0.54 -31.54 9.32 25.60 0.24 -31.30 16 17 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 18 C 0.00 0.13 5.46 84.66 0.46 0.59 16 19 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 20 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 26 H 0.06 1.16 7.66 -2.39 -0.02 1.14 16 27 H 0.17 3.15 4.53 -2.91 -0.01 3.14 16 28 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 0.80 7.66 -2.38 -0.02 0.78 16 30 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 31 H 0.06 1.04 7.65 -2.38 -0.02 1.02 16 32 H 0.06 1.04 7.67 -2.39 -0.02 1.02 16 33 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.15 3.91 6.26 -2.91 -0.02 3.89 16 35 H 0.06 2.57 7.84 -2.39 -0.02 2.55 16 36 H 0.03 1.13 8.00 -2.39 -0.02 1.11 16 37 H 0.33 14.75 8.72 -89.69 -0.78 13.97 16 38 H -0.04 -2.20 8.14 -2.39 -0.02 -2.22 16 39 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -74.00 336.31 2.34 -71.66 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.27 Total: 16.63 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 5.69 Total: -13.36 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -3.10 Total: -92.04 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -2.55 Total: -29.97 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -74.00 2.34 -71.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.522 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds