Wall clock time and date at job start Tue Mar 31 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 116.99598 * 2 1 4 4 C 1.38671 * 120.00284 * 359.72898 * 3 2 1 5 5 C 1.38673 * 120.00061 * 179.76369 * 4 3 2 6 6 O 1.35894 * 120.00306 * 180.23279 * 5 4 3 7 7 C 1.42895 * 116.99827 * 0.27567 * 6 5 4 8 8 C 1.38678 * 119.99949 * 0.51056 * 5 4 3 9 9 C 1.50697 * 120.00271 * 179.72486 * 8 5 4 10 10 N 1.46900 * 109.46974 * 270.01725 * 9 8 5 11 11 C 1.46902 * 111.00025 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47134 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99712 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99699 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00119 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99601 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47120 * 89.99930 * 16 14 12 18 18 H 1.48500 * 109.46985 * 209.99961 * 16 14 12 19 19 H 1.48502 * 109.46921 * 329.99605 * 16 14 12 20 20 C 1.38678 * 119.99664 * 359.74237 * 8 5 4 21 21 O 1.35893 * 119.99877 * 179.97438 * 20 8 5 22 22 C 1.42905 * 117.00125 * 180.02562 * 21 20 8 23 23 C 1.38673 * 119.99507 * 179.97438 * 3 2 1 24 24 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47352 * 299.99768 * 1 2 3 26 26 H 1.08996 * 109.47452 * 60.00221 * 1 2 3 27 27 H 1.08000 * 119.99999 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.47271 * 180.02562 * 7 6 5 29 29 H 1.09006 * 109.47309 * 299.99547 * 7 6 5 30 30 H 1.09000 * 109.47501 * 59.99976 * 7 6 5 31 31 H 1.09004 * 109.47233 * 30.01916 * 9 8 5 32 32 H 1.08998 * 109.47364 * 150.01668 * 9 8 5 33 33 H 1.00903 * 110.99609 * 56.04806 * 10 9 8 34 34 H 1.08995 * 109.47542 * 300.00497 * 11 10 9 35 35 H 1.09003 * 109.46766 * 60.00549 * 11 10 9 36 36 H 0.97001 * 120.00032 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47106 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.47036 * 299.99479 * 22 21 20 39 39 H 1.08992 * 109.47098 * 59.99860 * 22 21 20 40 40 H 1.07999 * 120.00233 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2906 2.3738 -0.0057 5 6 1.9201 3.6095 -0.0007 6 8 1.1800 4.7492 -0.0015 7 6 -0.2411 4.5998 -0.0014 8 6 3.3050 3.6821 -0.0008 9 6 3.9891 5.0248 -0.0017 10 7 4.2110 5.4604 -1.3870 11 6 4.8772 6.7691 -1.4271 12 6 5.0869 7.1822 -2.8611 13 1 4.7579 6.5374 -3.6624 14 6 5.6989 8.3835 -3.1499 15 7 6.0991 9.1690 -2.1739 16 14 5.9583 8.8960 -4.9274 17 1 4.7797 9.6675 -5.3972 18 1 7.1750 9.7417 -5.0262 19 1 6.1266 7.6860 -5.7718 20 6 4.0603 2.5190 -0.0004 21 8 5.4173 2.5902 -0.0010 22 6 6.1319 1.3526 -0.0011 23 6 3.4307 1.2834 0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2121 2.3173 -0.0097 28 1 -0.7099 5.5838 -0.0026 29 1 -0.5488 4.0502 -0.8911 30 1 -0.5488 4.0514 0.8889 31 1 3.3613 5.7529 0.5120 32 1 4.9472 4.9448 0.5119 33 1 3.3441 5.4803 -1.9030 34 1 4.2552 7.5090 -0.9234 35 1 5.8414 6.7015 -0.9233 36 1 6.5300 10.0140 -2.3771 37 1 7.2035 1.5518 -0.0012 38 1 5.8690 0.7812 0.8891 39 1 5.8682 0.7809 -0.8908 40 1 4.0189 0.3777 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037374872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:16 Heat of formation + Delta-G solvation = -81.858883 kcal Electronic energy + Delta-G solvation = -22211.501858 eV Core-core repulsion = 18799.877798 eV Total energy + Delta-G solvation = -3411.624061 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.76122 -38.94183 -38.87249 -35.89828 -34.77502 -32.46586 -30.55076 -29.68751 -28.15593 -27.36378 -27.13252 -25.99434 -23.87137 -21.80266 -21.41956 -20.86512 -19.02224 -17.29834 -16.42574 -16.39498 -16.25553 -16.13972 -15.55839 -15.39008 -15.29122 -14.78376 -14.58891 -14.24384 -13.95268 -13.22752 -12.96960 -12.67245 -12.48691 -12.40301 -12.01923 -11.64346 -11.63861 -11.49893 -11.42730 -11.21716 -10.99668 -10.74696 -10.58638 -10.43882 -9.99838 -9.78301 -9.05477 -8.36715 -8.13358 -7.82625 -7.01947 -5.91478 -3.92283 1.49807 1.51467 2.94454 3.16596 3.38815 3.44209 3.49758 3.77382 3.79125 4.53312 4.78125 4.91281 4.91921 4.93675 5.08301 5.09199 5.11670 5.20238 5.22668 5.25113 5.27846 5.42848 5.44091 5.55740 5.63607 5.81698 6.03760 6.12319 6.24697 6.38807 6.68304 6.73653 7.09227 7.43958 7.45497 7.57520 7.61967 7.92568 8.28320 8.61616 8.81000 9.17787 9.71676 11.19756 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018791 B = 0.004267 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.752312 B = 6560.800544 C = 7358.042173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.192 3.808 4 C -0.332 4.332 5 C 0.202 3.798 6 O -0.301 6.301 7 C 0.029 3.971 8 C -0.167 4.167 9 C 0.118 3.882 10 N -0.679 5.679 11 C 0.194 3.806 12 C -0.508 4.508 13 H 0.061 0.939 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.219 3.781 21 O -0.289 6.289 22 C 0.026 3.974 23 C -0.279 4.279 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.132 0.868 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.326 0.674 34 H -0.015 1.015 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.838 -18.205 7.313 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.146 3.854 4 C -0.352 4.352 5 C 0.155 3.845 6 O -0.214 6.214 7 C -0.067 4.067 8 C -0.169 4.169 9 C -0.011 4.011 10 N -0.310 5.310 11 C 0.068 3.932 12 C -0.547 4.547 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.198 1.198 20 C 0.172 3.828 21 O -0.201 6.201 22 C -0.069 4.069 23 C -0.299 4.299 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.150 0.850 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.003 0.997 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.867 -18.192 7.282 22.406 hybrid contribution -1.108 0.593 -0.682 1.430 sum -11.975 -17.598 6.600 22.286 Atomic orbital electron populations 1.23033 0.78531 1.03703 1.01418 1.86046 1.21310 1.27048 1.88491 1.18228 0.91243 0.83367 0.92565 1.21017 1.00126 0.91730 1.22321 1.18141 0.89987 0.84463 0.91883 1.86171 1.18770 1.28582 1.87840 1.23060 0.78738 1.03900 1.00967 1.18430 0.89304 0.95540 1.13591 1.20393 0.98155 0.89714 0.92824 1.60734 1.27703 1.32859 1.09659 1.19545 0.93764 0.82901 0.97030 1.21211 1.38058 1.03086 0.92315 0.92086 1.24981 0.95844 0.96498 0.97327 1.69972 1.41062 1.11625 1.31272 0.86510 0.77456 0.78436 0.85059 1.20838 1.21316 1.19823 1.17993 0.82783 0.91411 0.90650 1.86252 1.14608 1.31923 1.87293 1.23095 0.97097 0.85557 1.01136 1.20207 0.92346 0.97452 1.19856 0.88339 0.92721 0.92616 0.85035 0.88074 0.92705 0.92938 0.95320 0.90839 0.85773 0.99706 0.95406 0.93063 0.88094 0.92861 0.92521 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.78 10.49 -19.41 -0.20 -3.98 16 3 C 0.19 2.65 6.68 -39.26 -0.26 2.39 16 4 C -0.33 -4.47 8.02 -39.26 -0.31 -4.79 16 5 C 0.20 3.24 6.65 -39.26 -0.26 2.98 16 6 O -0.30 -4.68 9.53 -19.41 -0.18 -4.86 16 7 C 0.03 0.29 9.81 101.05 0.99 1.28 16 8 C -0.17 -3.02 5.42 -104.30 -0.57 -3.58 16 9 C 0.12 2.47 5.36 -4.98 -0.03 2.44 16 10 N -0.68 -16.31 6.48 -116.34 -0.75 -17.07 16 11 C 0.19 5.47 5.44 -4.97 -0.03 5.44 16 12 C -0.51 -15.17 9.32 -34.44 -0.32 -15.49 16 13 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.85 13.29 55.43 0.74 -27.12 16 16 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.22 3.66 6.65 -39.26 -0.26 3.40 16 21 O -0.29 -4.80 9.53 -19.40 -0.18 -4.99 16 22 C 0.03 0.30 9.81 101.05 0.99 1.29 16 23 C -0.28 -4.03 8.97 -39.26 -0.35 -4.38 16 24 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 26 H 0.06 0.39 7.65 -51.93 -0.40 0.00 16 27 H 0.13 1.38 4.52 -52.49 -0.24 1.14 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.49 7.65 -51.93 -0.40 0.10 16 30 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 31 H 0.03 0.61 7.53 -51.93 -0.39 0.22 16 32 H 0.07 1.57 7.53 -51.93 -0.39 1.18 16 33 H 0.33 7.69 8.71 -39.29 -0.34 7.35 16 34 H -0.01 -0.44 8.14 -51.93 -0.42 -0.86 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 39 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 40 H 0.13 1.66 6.29 -52.49 -0.33 1.33 16 LS Contribution 334.95 15.07 5.05 5.05 Total: -1.00 -34.69 334.95 -5.82 -40.51 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.74 Total: 1.33 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 0.48 Total: -6.30 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.02 Total: -44.18 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.57 Total: -13.83 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.69 -5.82 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037374872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.351 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds