Wall clock time and date at job start Tue Mar 31 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35987 * 117.00210 * 2 1 4 4 C 1.38696 * 120.00069 * 180.02562 * 3 2 1 5 5 C 1.38131 * 119.99577 * 180.02562 * 4 3 2 6 6 C 1.38691 * 120.00607 * 0.02562 * 5 4 3 7 7 O 1.35984 * 120.00342 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00110 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47183 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47425 * 54.99890 * 9 8 7 11 11 O 1.42906 * 109.47159 * 295.00092 * 9 8 7 12 12 C 1.53003 * 109.47439 * 175.00428 * 9 8 7 13 13 N 1.46498 * 109.47536 * 185.00252 * 12 9 8 14 14 C 1.46494 * 120.00220 * 89.99330 * 13 12 9 15 15 C 1.36937 * 119.99651 * 269.99758 * 13 12 9 16 16 H 1.08001 * 119.99981 * 141.91399 * 15 13 12 17 17 C 1.38811 * 120.00047 * 321.91831 * 15 13 12 18 18 N 1.31616 * 120.00010 * 157.19380 * 17 15 13 19 19 Si 1.86799 * 119.99870 * 337.18905 * 17 15 13 20 20 H 1.48508 * 109.46966 * 95.68036 * 19 17 15 21 21 H 1.48502 * 109.47038 * 215.67566 * 19 17 15 22 22 H 1.48493 * 109.47286 * 335.67657 * 19 17 15 23 23 C 1.38697 * 119.99673 * 0.25566 * 6 5 4 24 24 C 1.38132 * 120.00120 * 359.48729 * 23 6 5 25 25 H 1.09000 * 109.47385 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46804 * 299.99660 * 1 2 3 27 27 H 1.08995 * 109.47557 * 59.99619 * 1 2 3 28 28 H 1.07996 * 120.00064 * 0.02562 * 4 3 2 29 29 H 1.08007 * 119.99823 * 179.97438 * 5 4 3 30 30 H 1.08995 * 109.47397 * 300.00435 * 8 7 6 31 31 H 1.09005 * 109.46730 * 59.99905 * 8 7 6 32 32 H 0.96694 * 114.00271 * 300.00036 * 11 9 8 33 33 H 1.09002 * 109.46505 * 305.00035 * 12 9 8 34 34 H 1.08997 * 109.47278 * 64.99350 * 12 9 8 35 35 H 1.09010 * 109.47066 * 85.68946 * 14 13 12 36 36 H 1.09001 * 109.47408 * 205.68834 * 14 13 12 37 37 H 1.09003 * 109.47748 * 325.69157 * 14 13 12 38 38 H 0.97000 * 120.00434 * 179.97438 * 18 17 15 39 39 H 1.08007 * 119.99821 * 179.72591 * 23 6 5 40 40 H 1.07997 * 120.00340 * 180.23607 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4314 1.2842 -0.0005 5 6 4.0585 2.5150 0.0000 6 6 3.3032 3.6782 0.0016 7 8 3.9205 4.8898 0.0027 8 6 3.0806 6.0459 0.0037 9 6 3.9478 7.3063 0.0042 10 1 4.6390 7.2721 -0.8379 11 8 4.6874 7.3752 1.2250 12 6 3.0530 8.5412 -0.1203 13 7 3.8877 9.7391 -0.2400 14 6 4.3060 10.2114 -1.5622 15 6 4.2770 10.4174 0.8841 16 1 5.2682 10.8424 0.9422 17 6 3.3978 10.5586 1.9489 18 7 3.8614 10.7883 3.1591 19 14 1.5566 10.4228 1.6642 20 1 1.1110 9.0372 1.9591 21 1 0.8461 11.3721 2.5582 22 1 1.2490 10.7512 0.2490 23 6 1.9181 3.6056 0.0080 24 6 1.2909 2.3749 0.0021 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 4.0196 0.3784 -0.0014 29 1 5.1371 2.5715 0.0000 30 1 2.4512 6.0386 -0.8861 31 1 2.4514 6.0370 0.8938 32 1 4.1352 7.4086 2.0181 33 1 2.4243 8.4464 -1.0057 34 1 2.4231 8.6242 0.7653 35 1 3.5294 10.8509 -1.9820 36 1 5.2324 10.7781 -1.4693 37 1 4.4672 9.3566 -2.2191 38 1 3.2470 10.8874 3.9032 39 1 1.3299 4.5114 0.0138 40 1 0.2125 2.3183 0.0033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:02 Heat of formation + Delta-G solvation = -65.962771 kcal Electronic energy + Delta-G solvation = -21933.566786 eV Core-core repulsion = 18522.632032 eV Total energy + Delta-G solvation = -3410.934754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.47158 -39.12658 -37.40538 -36.14789 -34.63661 -31.67539 -31.33271 -30.37272 -29.15196 -27.30320 -26.54495 -25.59830 -23.03566 -22.02207 -21.36312 -20.81937 -18.53524 -17.79318 -16.98196 -16.51214 -16.28904 -15.90411 -15.41411 -15.21274 -14.91380 -14.40469 -14.13895 -13.85985 -13.72697 -13.37674 -13.21829 -12.80588 -12.64535 -12.50755 -12.36937 -11.99594 -11.89172 -11.50250 -11.34802 -10.98947 -10.81538 -10.55556 -10.41578 -10.37491 -10.01825 -9.63708 -9.37368 -9.19872 -8.55297 -7.78780 -6.84289 -6.00007 -3.40049 1.13468 1.39141 3.08445 3.18172 3.31094 3.40577 3.44909 3.63907 4.46344 4.57983 4.66037 4.80916 4.87975 4.88707 4.99109 5.04539 5.18059 5.22443 5.31615 5.33868 5.34519 5.43914 5.60540 5.71882 5.80841 5.90587 5.99319 6.15396 6.20984 6.22881 6.26145 6.47378 6.54456 6.66482 6.69702 7.16842 7.51809 8.01682 8.37271 8.46937 8.94143 9.67950 10.07250 11.15659 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.003647 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.918803 B = 7676.602688 C = 8039.594694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.080 3.920 4 C -0.111 4.111 5 C -0.115 4.115 6 C 0.103 3.897 7 O -0.300 6.300 8 C 0.024 3.976 9 C 0.095 3.905 10 H 0.097 0.903 11 O -0.530 6.530 12 C 0.111 3.889 13 N -0.601 5.601 14 C 0.124 3.876 15 C -0.252 4.252 16 H 0.079 0.921 17 C 0.034 3.966 18 N -0.896 5.896 19 Si 0.870 3.130 20 H -0.289 1.289 21 H -0.300 1.300 22 H -0.271 1.271 23 C -0.174 4.174 24 C -0.167 4.167 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.370 0.630 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.009 0.991 36 H 0.048 0.952 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.130 0.870 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.158 -18.752 -7.651 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.035 3.965 4 C -0.129 4.129 5 C -0.134 4.134 6 C 0.057 3.943 7 O -0.214 6.214 8 C -0.052 4.052 9 C 0.032 3.968 10 H 0.115 0.885 11 O -0.333 6.333 12 C -0.016 4.016 13 N -0.324 5.324 14 C -0.021 4.021 15 C -0.381 4.381 16 H 0.096 0.904 17 C -0.166 4.166 18 N -0.537 5.537 19 Si 0.700 3.300 20 H -0.218 1.218 21 H -0.227 1.227 22 H -0.196 1.196 23 C -0.193 4.193 24 C -0.185 4.185 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.216 0.784 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.148 0.852 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.375 -18.801 -7.907 21.369 hybrid contribution -2.288 0.133 0.342 2.318 sum -8.663 -18.668 -7.565 21.927 Atomic orbital electron populations 1.23005 0.78767 1.03677 1.01233 1.86053 1.21028 1.26834 1.89554 1.18870 0.92317 0.84087 1.01214 1.20208 0.91254 0.97809 1.03652 1.20288 1.00425 0.88997 1.03687 1.19073 0.90949 0.86377 0.97862 1.86234 1.35503 1.11463 1.88163 1.23908 0.94772 0.85308 1.01251 1.22754 0.94709 0.89779 0.89592 0.88496 1.86610 1.36007 1.96261 1.14471 1.21799 0.92978 0.86850 0.99992 1.43883 1.60849 1.24723 1.02994 1.21111 0.98076 0.96560 0.86376 1.18746 0.97475 1.30189 0.91699 0.90396 1.25429 0.97205 0.98512 0.95473 1.69896 1.34358 1.50901 0.98545 0.87064 0.88458 0.76325 0.78148 1.21780 1.22739 1.19567 1.21117 0.93645 0.98430 1.06100 1.21006 0.99855 0.91724 1.05944 0.88430 0.92816 0.92849 0.84642 0.84329 0.91816 0.92098 0.78386 0.93389 0.92312 0.97326 0.93339 0.95449 0.92797 0.85176 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.48 10.50 -19.70 -0.21 -3.68 16 3 C 0.08 0.94 6.69 -39.24 -0.26 0.68 16 4 C -0.11 -1.29 9.98 -39.45 -0.39 -1.68 16 5 C -0.12 -1.47 9.98 -39.45 -0.39 -1.87 16 6 C 0.10 1.48 6.69 -39.24 -0.26 1.22 16 7 O -0.30 -4.91 10.10 -24.54 -0.25 -5.15 16 8 C 0.02 0.37 4.37 37.15 0.16 0.53 16 9 C 0.09 1.77 3.49 -26.73 -0.09 1.68 16 10 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 11 O -0.53 -11.53 12.78 -40.08 -0.51 -12.04 16 12 C 0.11 2.26 4.21 -4.04 -0.02 2.24 16 13 N -0.60 -14.11 2.45 -181.12 -0.44 -14.55 16 14 C 0.12 2.45 10.70 59.84 0.64 3.09 16 15 C -0.25 -6.96 9.39 -15.06 -0.14 -7.10 16 16 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 17 C 0.03 0.94 5.29 -17.43 -0.09 0.85 16 18 N -0.90 -26.65 13.97 55.49 0.78 -25.87 16 19 Si 0.87 21.28 25.10 -169.99 -4.27 17.01 16 20 H -0.29 -6.68 6.68 56.52 0.38 -6.30 16 21 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.17 -2.24 9.03 -39.45 -0.36 -2.59 16 24 C -0.17 -1.91 9.03 -39.45 -0.36 -2.27 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 30 H 0.06 0.85 7.67 -51.93 -0.40 0.45 16 31 H 0.06 0.91 7.65 -51.93 -0.40 0.51 16 32 H 0.37 7.58 9.04 45.56 0.41 7.99 16 33 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.06 1.29 3.38 -51.93 -0.18 1.11 16 35 H 0.01 0.16 8.14 -51.92 -0.42 -0.26 16 36 H 0.05 0.95 8.00 -51.93 -0.42 0.54 16 37 H 0.03 0.46 8.10 -51.93 -0.42 0.04 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.13 1.53 6.29 -52.48 -0.33 1.20 16 40 H 0.13 1.16 6.29 -52.49 -0.33 0.83 16 LS Contribution 331.19 15.07 4.99 4.99 Total: -1.00 -32.25 331.19 -5.45 -37.70 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.97 Total: 5.61 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -0.57 Total: -4.02 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.33 Total: -40.42 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.97 Total: -20.88 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.27 Total: 17.01 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.25 -5.45 -37.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.260 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds