Wall clock time and date at job start Tue Mar 31 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99768 * 2 1 4 4 C 1.53001 * 109.46813 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47184 * 64.99803 * 4 3 2 6 6 C 1.46502 * 119.99906 * 270.00001 * 5 4 3 7 7 C 1.50706 * 109.46902 * 270.00250 * 6 5 4 8 8 H 1.07998 * 119.99798 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99672 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99924 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00397 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47243 * 89.99574 * 11 9 7 13 13 H 1.48498 * 109.47189 * 210.00119 * 11 9 7 14 14 H 1.48497 * 109.47055 * 329.99884 * 11 9 7 15 15 C 1.34777 * 120.00246 * 90.00095 * 5 4 3 16 16 O 1.21281 * 120.00125 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99549 * 359.97438 * 15 5 4 18 18 C 1.53008 * 109.46700 * 180.02562 * 17 15 5 19 19 C 1.50697 * 109.46697 * 180.02562 * 18 17 15 20 20 C 1.34511 * 125.79278 * 90.00315 * 19 18 17 21 21 C 1.41386 * 106.84141 * 180.02562 * 20 19 18 22 22 C 1.34507 * 106.84010 * 0.02562 * 21 20 19 23 23 O 1.34304 * 108.42311 * 359.97438 * 22 21 20 24 24 H 1.08991 * 109.47342 * 300.00559 * 1 2 3 25 25 H 1.09004 * 109.47230 * 60.00498 * 1 2 3 26 26 H 1.08997 * 109.47285 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47802 * 59.99787 * 3 2 1 28 28 H 1.08994 * 109.46743 * 299.99036 * 3 2 1 29 29 H 1.09002 * 109.47263 * 305.00023 * 4 3 2 30 30 H 1.08996 * 109.46891 * 184.99734 * 4 3 2 31 31 H 1.09007 * 109.47111 * 29.99727 * 6 5 4 32 32 H 1.08993 * 109.47337 * 150.00347 * 6 5 4 33 33 H 0.96994 * 119.99877 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.46890 * 60.00787 * 17 15 5 35 35 H 1.08995 * 109.47695 * 300.00353 * 17 15 5 36 36 H 1.08994 * 109.46939 * 60.00298 * 18 17 15 37 37 H 1.09003 * 109.47242 * 299.99884 * 18 17 15 38 38 H 1.07999 * 126.58024 * 359.97438 * 20 19 18 39 39 H 1.08004 * 126.57483 * 179.97438 * 21 20 19 40 40 H 1.08004 * 125.79019 * 180.26381 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5017 -1.2982 -0.9410 8 1 6.2203 -0.5461 -0.6503 9 6 5.8613 -2.6292 -0.9479 10 7 7.0793 -2.9831 -0.6000 11 14 4.6187 -3.9299 -1.4514 12 1 4.7044 -4.1554 -2.9167 13 1 4.9128 -5.1982 -0.7373 14 1 3.2510 -3.4699 -1.1006 15 6 4.2634 1.3328 -2.3200 16 8 4.6291 0.8189 -3.3559 17 6 4.1295 2.8310 -2.2283 18 6 4.5120 3.4603 -3.5695 19 6 4.3787 4.9585 -3.4775 20 6 5.3468 5.8127 -3.0999 21 6 4.7917 7.1118 -3.1564 22 6 3.5175 6.9737 -3.5646 23 8 3.2729 5.6673 -3.7578 24 1 -0.3633 0.5139 0.8898 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8465 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8508 0.5685 0.8427 30 1 3.9784 2.1765 0.0902 31 1 3.3857 -1.3632 -0.6711 32 1 3.9140 -1.2124 -2.3643 33 1 7.3324 -3.9194 -0.6053 34 1 4.7910 3.2077 -1.4481 35 1 3.0986 3.0897 -1.9868 36 1 3.8503 3.0835 -4.3494 37 1 5.5429 3.2017 -3.8114 38 1 6.3544 5.5555 -2.8086 39 1 5.2942 8.0373 -2.9169 40 1 2.8122 7.7775 -3.7163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071140986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:20 Heat of formation + Delta-G solvation = -66.149542 kcal Electronic energy + Delta-G solvation = -22155.312636 eV Core-core repulsion = 18744.369783 eV Total energy + Delta-G solvation = -3410.942853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.60173 -39.32601 -37.62547 -35.01997 -33.94941 -32.85250 -32.47098 -29.92486 -29.03805 -27.46910 -26.06287 -24.51067 -22.71603 -21.86439 -21.78381 -20.32596 -18.39949 -17.50500 -16.90432 -16.67006 -16.26778 -15.90819 -15.59881 -15.35366 -15.02985 -14.60865 -14.30885 -13.99248 -13.17935 -13.08671 -12.87483 -12.72734 -12.61835 -12.30540 -12.10231 -11.95432 -11.78948 -11.69476 -11.45683 -11.06538 -10.94199 -10.74189 -10.37025 -10.05181 -9.98407 -9.55125 -9.46525 -9.05576 -8.50181 -8.47195 -7.67428 -6.01188 -3.98774 1.67173 2.55700 2.94238 3.32515 3.36902 3.42638 3.47177 3.82315 3.95863 4.48502 4.61035 4.94513 4.96285 5.02458 5.12397 5.17557 5.24776 5.31610 5.35087 5.39938 5.46440 5.52061 5.56494 5.70155 5.74775 5.75409 5.79493 5.98139 6.01651 6.18169 6.18587 6.46257 6.94212 7.08833 7.10354 7.30039 7.40124 7.71805 8.29985 8.54447 8.96091 9.02988 9.60227 11.12289 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.004576 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.637931 B = 6117.189286 C = 7190.521318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.043 3.957 4 C 0.111 3.889 5 N -0.584 5.584 6 C 0.219 3.781 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.901 5.901 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.506 3.494 16 O -0.540 6.540 17 C -0.137 4.137 18 C -0.026 4.026 19 C 0.000 4.000 20 C -0.215 4.215 21 C -0.212 4.212 22 C -0.052 4.052 23 O -0.177 6.177 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.500 17.901 -0.116 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.035 4.035 4 C -0.014 4.014 5 N -0.315 5.315 6 C 0.098 3.902 7 C -0.565 4.565 8 H 0.091 0.909 9 C -0.130 4.130 10 N -0.540 5.540 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.293 3.707 16 O -0.418 6.418 17 C -0.178 4.178 18 C -0.064 4.064 19 C -0.051 4.051 20 C -0.234 4.234 21 C -0.232 4.232 22 C -0.119 4.119 23 O -0.073 6.073 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.346 17.136 -0.726 20.565 hybrid contribution -0.567 -0.182 0.003 0.595 sum -11.913 16.955 -0.723 20.734 Atomic orbital electron populations 1.22708 0.81929 1.02560 0.99333 1.88062 1.18856 1.27254 1.95196 1.23144 0.95315 0.85291 0.99768 1.21557 0.91052 0.99375 0.89367 1.47838 1.64489 1.08942 1.10205 1.19687 0.97653 0.74953 0.97864 1.21371 0.96185 0.93528 1.45418 0.90903 1.24827 0.95149 0.98353 0.94654 1.69902 1.18194 1.17209 1.48671 0.86870 0.82534 0.81330 0.79202 1.20068 1.21230 1.18640 1.20257 0.78118 0.88314 0.84019 1.90678 1.46608 1.75018 1.29476 1.21734 1.03507 0.93840 0.98670 1.19904 1.05013 0.83389 0.98047 1.22642 0.84693 0.94809 1.02909 1.21652 1.01111 0.92323 1.08276 1.21831 0.95359 0.98743 1.07234 1.23972 0.98390 0.83581 1.05995 1.84031 1.37091 1.18159 1.68049 0.94483 0.94494 0.89856 0.92807 0.93578 0.88697 0.89639 0.93947 0.94980 0.92698 0.88806 0.89449 0.89331 0.87753 0.83367 0.83651 0.78391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.38 -6.05 9.53 -35.23 -0.34 -6.39 16 3 C 0.04 0.57 6.28 37.16 0.23 0.80 16 4 C 0.11 1.73 5.62 -4.04 -0.02 1.70 16 5 N -0.58 -11.99 2.42 -175.05 -0.42 -12.41 16 6 C 0.22 5.50 4.05 -5.19 -0.02 5.48 16 7 C -0.53 -15.36 9.94 -34.44 -0.34 -15.70 16 8 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 11 Si 0.87 22.21 27.47 -169.99 -4.67 17.54 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 15 C 0.51 10.04 7.67 -10.99 -0.08 9.96 16 16 O -0.54 -13.02 15.56 5.56 0.09 -12.94 16 17 C -0.14 -1.92 4.23 -27.88 -0.12 -2.04 16 18 C -0.03 -0.36 5.04 -27.88 -0.14 -0.50 16 19 C 0.00 0.00 6.57 -35.63 -0.23 -0.24 16 20 C -0.21 -2.52 10.81 -39.70 -0.43 -2.95 16 21 C -0.21 -2.16 10.91 -39.70 -0.43 -2.59 16 22 C -0.05 -0.51 12.09 29.41 0.36 -0.15 16 23 O -0.18 -2.21 10.65 5.70 0.06 -2.14 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.58 7.30 -51.93 -0.38 0.20 16 29 H 0.09 1.59 8.07 -51.93 -0.42 1.17 16 30 H 0.09 1.05 6.44 -51.93 -0.33 0.71 16 31 H 0.04 1.06 6.17 -51.93 -0.32 0.74 16 32 H 0.03 0.87 6.85 -51.93 -0.36 0.51 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.09 1.17 7.40 -51.93 -0.38 0.78 16 35 H 0.09 1.06 7.26 -51.93 -0.38 0.68 16 36 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.10 1.48 8.10 -51.93 -0.42 1.06 16 38 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.20 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -36.04 338.83 -5.58 -41.62 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.96 Total: -0.26 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.22 Total: -2.69 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.35 Total: -39.84 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.19 Total: -21.47 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.04 -5.58 -41.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071140986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.530 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds