Wall clock time and date at job start Tue Mar 31 2020 05:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.46718 * 2 1 4 4 C 1.42901 * 114.00111 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47083 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47266 * 180.02562 * 5 4 3 7 7 O 1.21287 * 119.99578 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00755 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00646 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47443 * 270.00265 * 9 8 6 11 11 H 1.08001 * 120.00056 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00480 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99528 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00487 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46990 * 59.99741 * 14 12 10 16 16 H 1.48497 * 109.47011 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47086 * 300.00255 * 14 12 10 18 18 C 1.46505 * 119.99455 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.47064 * 90.00114 * 18 8 6 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 8 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 8 24 24 H 1.08999 * 109.46723 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47182 * 299.99409 * 1 2 3 26 26 H 1.08994 * 109.47460 * 60.00151 * 1 2 3 27 27 H 1.08999 * 109.47182 * 240.00590 * 2 1 3 28 28 H 1.08994 * 109.47460 * 119.99849 * 2 1 3 29 29 H 1.09006 * 109.46794 * 60.00460 * 4 3 2 30 30 H 1.09002 * 109.46995 * 300.00400 * 4 3 2 31 31 H 1.09004 * 109.47424 * 60.00564 * 5 4 3 32 32 H 1.09002 * 109.47551 * 300.00083 * 5 4 3 33 33 H 1.09006 * 109.46911 * 30.00087 * 9 8 6 34 34 H 1.08996 * 109.47170 * 149.99599 * 9 8 6 35 35 H 0.97003 * 119.99687 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47068 * 210.00083 * 18 8 6 37 37 H 1.09001 * 109.47372 * 330.00170 * 18 8 6 38 38 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 39 39 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 40 40 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 -0.0006 5 6 3.8252 2.9386 -0.0012 6 6 5.3275 3.0577 -0.0024 7 8 6.0150 2.0586 -0.0033 8 7 5.9071 4.2745 -0.0026 9 6 7.3674 4.3903 -0.0032 10 6 7.8689 4.4298 1.4173 11 1 7.1697 4.3747 2.2385 12 6 9.2204 4.5364 1.6686 13 7 10.0719 4.6031 0.6686 14 14 9.8419 4.5862 3.4295 15 1 9.4439 3.3389 4.1303 16 1 11.3223 4.7022 3.4287 17 1 9.2535 5.7564 4.1293 18 6 5.0766 5.4814 -0.0010 19 6 4.7936 5.8945 1.4204 20 6 5.5448 6.7288 2.1615 21 6 4.9151 6.8355 3.4228 22 6 3.8166 6.0607 3.3769 23 8 3.7455 5.4968 2.1600 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8332 0.9769 -0.8909 30 1 3.8340 0.9766 0.8891 31 1 3.4228 3.4224 0.8889 32 1 3.4220 3.4219 -0.8911 33 1 7.7997 3.5318 -0.5174 34 1 7.6590 5.3062 -0.5172 35 1 11.0228 4.6777 0.8454 36 1 5.6031 6.2854 -0.5152 37 1 4.1368 5.2764 -0.5137 38 1 6.4538 7.2229 1.8520 39 1 5.2517 7.4260 4.2622 40 1 3.1095 5.9190 4.1809 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076876079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:38 Heat of formation + Delta-G solvation = -70.626724 kcal Electronic energy + Delta-G solvation = -22475.698718 eV Core-core repulsion = 19064.561720 eV Total energy + Delta-G solvation = -3411.136998 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.09414 -39.20822 -37.78758 -35.24893 -32.84810 -32.51495 -32.19320 -30.22218 -29.95024 -27.38362 -25.34220 -23.93525 -22.81253 -21.94875 -21.27182 -20.29387 -18.46121 -17.24020 -16.97248 -16.46952 -16.23220 -15.73602 -15.49505 -15.09805 -14.81477 -14.40405 -14.13871 -13.91505 -13.34597 -12.83389 -12.64965 -12.40499 -12.30631 -12.27725 -12.17971 -11.81008 -11.69880 -11.45461 -11.22161 -11.00091 -10.90776 -10.90116 -10.58034 -10.20653 -9.70568 -9.51816 -9.37919 -9.01185 -8.42402 -8.11110 -7.76645 -6.03182 -4.05797 2.11914 3.05469 3.26019 3.32945 3.36981 3.40798 3.50461 3.52095 4.18226 4.47544 4.96355 5.05889 5.06491 5.12149 5.21171 5.26684 5.31466 5.32831 5.41839 5.49296 5.59283 5.63200 5.76505 5.79640 5.84487 5.93563 6.04662 6.10850 6.25370 6.46068 6.52135 6.94859 6.99606 7.25745 7.38560 7.45983 7.59820 7.93808 8.23668 8.27793 8.88027 9.03179 9.58549 11.05314 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015345 B = 0.005314 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.289376 B = 5268.240555 C = 6223.126030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.080 3.920 5 C -0.142 4.142 6 C 0.514 3.486 7 O -0.537 6.537 8 N -0.594 5.594 9 C 0.245 3.755 10 C -0.517 4.517 11 H 0.058 0.942 12 C 0.062 3.938 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.195 3.805 19 C -0.030 4.030 20 C -0.170 4.170 21 C -0.214 4.214 22 C -0.053 4.053 23 O -0.179 6.179 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.263 0.737 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.150 0.850 39 H 0.141 0.859 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.575 0.322 -0.374 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.314 6.314 4 C 0.004 3.996 5 C -0.182 4.182 6 C 0.301 3.699 7 O -0.415 6.415 8 N -0.325 5.325 9 C 0.126 3.874 10 C -0.556 4.556 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.070 3.930 19 C -0.081 4.081 20 C -0.190 4.190 21 C -0.233 4.233 22 C -0.121 4.121 23 O -0.075 6.075 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -16.314 -0.238 -0.552 16.325 hybrid contribution 0.857 0.064 1.447 1.683 sum -15.457 -0.173 0.895 15.484 Atomic orbital electron populations 1.21738 0.93972 1.01991 1.03021 1.22414 0.95246 0.84045 1.00187 1.87799 1.21725 1.26285 1.95576 1.22126 0.79888 0.96035 1.01580 1.21586 0.94254 0.97379 1.05025 1.20143 0.89150 0.83738 0.76857 1.90682 1.65246 1.35873 1.49663 1.48328 1.09469 1.03515 1.71217 1.19375 0.71915 0.98284 0.97814 1.21367 0.91978 1.50057 0.92158 0.92343 1.24884 0.96666 0.95300 0.97098 1.69919 1.02574 1.50499 1.30628 0.86627 0.77467 0.78672 0.85115 1.20351 1.21283 1.20177 1.19846 0.95951 0.89799 0.87374 1.22961 0.88797 1.00018 0.96292 1.21608 1.01188 1.02520 0.93661 1.21811 0.97486 1.04658 0.99376 1.23839 1.01665 0.99546 0.87056 1.83964 1.42615 1.58305 1.22663 0.91313 0.91914 0.91943 0.93453 0.93439 0.92560 0.92509 0.88166 0.88808 0.93603 0.94824 0.92762 0.87374 0.89831 0.83246 0.84104 0.78844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.06 0.65 6.66 37.16 0.25 0.90 16 3 O -0.39 -5.67 10.34 -35.23 -0.36 -6.03 16 4 C 0.08 1.26 5.23 37.16 0.19 1.45 16 5 C -0.14 -2.29 4.62 -27.88 -0.13 -2.42 16 6 C 0.51 10.71 7.67 -10.99 -0.08 10.62 16 7 O -0.54 -13.41 15.56 5.55 0.09 -13.32 16 8 N -0.59 -12.30 2.44 -176.43 -0.43 -12.73 16 9 C 0.24 6.20 5.20 -5.20 -0.03 6.17 16 10 C -0.52 -14.32 9.13 -34.44 -0.31 -14.64 16 11 H 0.06 1.67 7.64 -52.49 -0.40 1.27 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 14 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 C 0.19 3.14 5.78 -5.19 -0.03 3.11 16 19 C -0.03 -0.51 6.85 -35.62 -0.24 -0.76 16 20 C -0.17 -3.03 10.39 -39.70 -0.41 -3.45 16 21 C -0.21 -3.39 10.91 -39.71 -0.43 -3.82 16 22 C -0.05 -0.77 12.09 29.41 0.36 -0.42 16 23 O -0.18 -2.96 9.56 5.68 0.05 -2.91 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 30 H 0.06 0.95 8.10 -51.93 -0.42 0.52 16 31 H 0.10 1.62 6.93 -51.93 -0.36 1.26 16 32 H 0.09 1.28 7.40 -51.93 -0.38 0.89 16 33 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 34 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.11 1.56 7.89 -51.93 -0.41 1.15 16 37 H 0.08 1.08 6.44 -51.93 -0.33 0.74 16 38 H 0.15 2.74 8.06 -52.49 -0.42 2.32 16 39 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 40 H 0.19 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -33.30 343.34 -6.40 -39.70 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.04 Total: 1.20 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.59 Total: -2.55 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.31 Total: -38.29 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.22 Total: -22.26 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.30 -6.40 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076876079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.923 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds