Wall clock time and date at job start Tue Mar 31 2020 06:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46929 * 2 1 4 4 O 1.34287 * 126.82084 * 269.95461 * 3 2 1 5 5 N 1.20889 * 111.63217 * 180.02562 * 4 3 2 6 6 C 1.30170 * 111.74331 * 359.70425 * 5 4 3 7 7 C 1.50695 * 126.81373 * 180.30341 * 6 5 4 8 8 C 1.35862 * 126.82258 * 89.99198 * 3 2 1 9 9 N 1.40769 * 128.05611 * 359.97095 * 8 3 2 10 10 C 1.34781 * 120.00124 * 127.42379 * 9 8 3 11 11 O 1.21604 * 119.99741 * 1.30249 * 10 9 8 12 12 N 1.34778 * 120.00184 * 181.58022 * 10 9 8 13 13 C 1.46494 * 120.00128 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47301 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46998 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.47027 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99842 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00055 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00304 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99869 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47101 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46898 * 119.99755 * 20 18 16 23 23 H 1.48498 * 109.46811 * 239.99514 * 20 18 16 24 24 H 1.08999 * 109.46961 * 60.00809 * 1 2 3 25 25 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47517 * 300.00419 * 1 2 3 27 27 H 1.08995 * 109.47517 * 239.99581 * 2 1 3 28 28 H 1.09007 * 109.46609 * 119.99283 * 2 1 3 29 29 H 1.08997 * 109.47656 * 276.14086 * 7 6 5 30 30 H 1.09000 * 109.47088 * 36.13810 * 7 6 5 31 31 H 1.09003 * 109.47700 * 156.13564 * 7 6 5 32 32 H 0.97002 * 120.00286 * 307.42299 * 9 8 3 33 33 H 0.97000 * 119.99816 * 359.97438 * 12 10 9 34 34 H 1.08997 * 109.47340 * 300.00250 * 13 12 10 35 35 H 1.09004 * 109.47313 * 59.99906 * 13 12 10 36 36 H 1.08997 * 109.46949 * 299.99752 * 14 13 12 37 37 H 1.08997 * 109.47209 * 59.99998 * 14 13 12 38 38 H 1.08997 * 109.46999 * 299.99636 * 15 14 13 39 39 H 1.08997 * 109.47212 * 59.99914 * 15 14 13 40 40 H 0.96996 * 120.00429 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.3014 2.1793 -1.0750 5 7 2.6905 3.2792 -0.7583 6 6 2.7335 3.4216 0.5349 7 6 3.1595 4.6516 1.2942 8 6 2.3036 2.1886 1.0876 9 7 2.1805 1.8426 2.4465 10 6 3.2238 2.0132 3.2826 11 8 4.2637 2.4881 2.8680 12 7 3.1164 1.6524 4.5767 13 6 4.2506 1.8373 5.4852 14 6 3.8677 1.3511 6.8845 15 6 5.0521 1.5449 7.8335 16 6 4.6752 1.0655 9.2117 17 1 3.6894 0.6633 9.3926 18 6 5.5885 1.1413 10.2417 19 7 6.7888 1.6315 10.0215 20 14 5.1210 0.5477 11.9501 21 1 3.7237 0.0452 11.9344 22 1 6.0366 -0.5468 12.3616 23 1 5.2311 1.6732 12.9125 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.2454 4.6632 1.3874 30 1 2.8314 5.5417 0.7575 31 1 2.7097 4.6397 2.2871 32 1 1.3448 1.4814 2.7813 33 1 2.2881 1.2702 4.9065 34 1 5.1041 1.2648 5.1222 35 1 4.5137 2.8942 5.5276 36 1 3.0144 1.9241 7.2473 37 1 3.6044 0.2943 6.8426 38 1 5.9057 0.9722 7.4709 39 1 5.3150 2.6018 7.8754 40 1 7.4315 1.6846 10.7461 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089415010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:54 Heat of formation + Delta-G solvation = 7.251724 kcal Electronic energy + Delta-G solvation = -21449.852877 eV Core-core repulsion = 18074.385694 eV Total energy + Delta-G solvation = -3375.467184 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.06806 -40.08573 -36.40599 -35.29722 -34.72399 -33.63013 -33.06416 -31.18573 -29.82049 -28.69201 -26.74895 -24.35893 -23.67014 -22.50333 -21.03352 -20.59258 -20.30121 -18.34978 -17.84832 -17.64452 -16.52150 -16.11293 -15.70477 -15.04498 -14.94824 -14.46256 -14.22339 -14.12996 -13.90986 -13.39874 -13.30949 -12.98647 -12.72152 -12.33278 -12.10410 -11.86842 -11.83692 -11.78524 -11.31077 -10.95546 -10.79506 -10.60597 -10.55661 -10.26159 -9.91936 -9.76808 -9.50992 -9.15495 -9.05091 -8.67929 -8.40768 -6.05074 -4.08390 1.20363 1.98808 2.36941 3.00383 3.18050 3.27609 3.35324 3.38424 4.02662 4.19220 4.25910 4.41838 4.65046 4.75768 4.80824 4.96332 5.30914 5.32633 5.36193 5.40523 5.51916 5.58188 5.60191 5.68713 5.73189 5.74763 6.04435 6.10571 6.35340 6.38338 6.54843 6.62704 6.86809 6.95308 7.60007 7.71915 7.90534 7.93480 8.11708 8.33936 8.53517 8.98521 9.56130 11.06224 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032202 B = 0.002746 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.306304 B =10194.647654 C =10798.657132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.039 4.039 3 C -0.048 4.048 4 O 0.102 5.898 5 N -0.363 5.363 6 C 0.038 3.962 7 C -0.066 4.066 8 C 0.060 3.940 9 N -0.663 5.663 10 C 0.701 3.299 11 O -0.571 6.571 12 N -0.735 5.735 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.407 0.593 33 H 0.396 0.604 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.503 -1.857 -19.482 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.078 4.078 3 C -0.115 4.115 4 O 0.041 5.959 5 N -0.070 5.070 6 C -0.123 4.123 7 C -0.123 4.123 8 C -0.039 4.039 9 N -0.317 5.317 10 C 0.401 3.599 11 O -0.447 6.447 12 N -0.389 5.389 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.243 0.757 33 H 0.229 0.771 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.032 -0.578 -20.744 24.505 hybrid contribution -1.012 -0.970 2.125 2.546 sum -14.044 -1.548 -18.619 23.373 Atomic orbital electron populations 1.21795 0.93485 1.02791 1.02698 1.20080 0.96456 0.86331 1.04902 1.24135 1.05168 0.96192 0.86016 1.84860 1.61740 1.17828 1.31519 1.73821 1.17869 0.99706 1.15586 1.23515 1.01489 0.97396 0.89851 1.20093 1.03019 0.90979 0.98214 1.17622 1.08818 0.92638 0.84849 1.41743 1.15657 1.69719 1.04628 1.15977 0.83225 0.79445 0.81242 1.90966 1.27920 1.49773 1.76044 1.45353 1.18631 1.67382 1.07527 1.21585 0.86873 1.01528 0.88819 1.21900 1.01716 1.00037 0.92189 1.19031 0.91965 0.97582 0.92813 1.21228 0.99210 1.41521 0.94121 0.92592 1.25032 0.95003 0.95332 0.99107 1.69970 1.05156 1.45635 1.32454 0.86530 0.78518 0.78483 0.84415 1.19758 1.20984 1.20991 0.91926 0.91126 0.92361 0.89060 0.88731 0.89379 0.91026 0.90686 0.75667 0.77093 0.91723 0.91710 0.92680 0.92681 0.96224 0.96216 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.34 16 2 C -0.04 -0.25 6.50 -27.88 -0.18 -0.43 16 3 C -0.05 -0.49 6.77 -35.16 -0.24 -0.73 16 4 O 0.10 1.23 11.20 16.53 0.19 1.42 16 5 N -0.36 -5.01 12.06 33.56 0.40 -4.61 16 6 C 0.04 0.52 6.96 -81.94 -0.57 -0.05 16 7 C -0.07 -0.82 9.04 36.00 0.33 -0.49 16 8 C 0.06 0.72 6.38 -83.24 -0.53 0.19 16 9 N -0.66 -7.04 5.48 -13.99 -0.08 -7.12 16 10 C 0.70 9.95 8.19 -86.91 -0.71 9.24 16 11 O -0.57 -10.52 14.59 5.27 0.08 -10.44 16 12 N -0.73 -9.63 5.56 -65.22 -0.36 -9.99 16 13 C 0.13 2.24 5.67 -4.05 -0.02 2.22 16 14 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 20 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.21 8.00 -51.93 -0.42 0.79 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.92 7.96 -51.93 -0.41 0.51 16 32 H 0.41 2.83 8.84 -40.82 -0.36 2.47 16 33 H 0.40 3.91 8.49 -40.82 -0.35 3.57 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -33.55 344.29 -7.27 -40.82 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.15 Total: -0.23 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.25 Total: -5.42 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.70 Total: -47.46 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.26 Total: -9.02 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.55 -7.27 -40.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089415010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.069 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds