Wall clock time and date at job start Tue Mar 31 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47035 * 2 1 4 4 O 1.34285 * 126.82361 * 269.97344 * 3 2 1 5 5 N 1.20899 * 111.62837 * 180.02562 * 4 3 2 6 6 C 1.30170 * 111.74467 * 359.74333 * 5 4 3 7 7 C 1.50699 * 126.81091 * 180.25263 * 6 5 4 8 8 C 1.35865 * 126.81885 * 89.99981 * 3 2 1 9 9 N 1.40776 * 128.05625 * 359.94003 * 8 3 2 10 10 C 1.34775 * 119.99824 * 127.11072 * 9 8 3 11 11 O 1.21597 * 119.99913 * 1.15507 * 10 9 8 12 12 N 1.34779 * 119.99966 * 181.15727 * 10 9 8 13 13 C 1.46501 * 119.99748 * 359.97438 * 12 10 9 14 14 C 1.52996 * 109.47110 * 90.00382 * 13 12 10 15 15 C 1.46495 * 120.00202 * 179.97438 * 12 10 9 16 16 C 1.50699 * 109.46926 * 89.99961 * 15 12 10 17 17 H 1.07998 * 120.00182 * 0.02562 * 16 15 12 18 18 C 1.37880 * 120.00024 * 180.02562 * 16 15 12 19 19 N 1.31519 * 119.99990 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00222 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47416 * 89.99664 * 20 18 16 22 22 H 1.48496 * 109.47286 * 210.00157 * 20 18 16 23 23 H 1.48499 * 109.46879 * 330.00152 * 20 18 16 24 24 H 1.09003 * 109.47070 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47341 * 300.00108 * 1 2 3 26 26 H 1.09007 * 109.46841 * 60.00023 * 1 2 3 27 27 H 1.09000 * 109.47398 * 240.00423 * 2 1 3 28 28 H 1.08994 * 109.46959 * 120.00295 * 2 1 3 29 29 H 1.09001 * 109.46917 * 276.16562 * 7 6 5 30 30 H 1.08996 * 109.47228 * 36.16434 * 7 6 5 31 31 H 1.09000 * 109.47405 * 156.17277 * 7 6 5 32 32 H 0.97002 * 120.00038 * 306.83567 * 9 8 3 33 33 H 1.09007 * 109.47025 * 209.99839 * 13 12 10 34 34 H 1.08993 * 109.47518 * 330.00050 * 13 12 10 35 35 H 1.09003 * 109.47449 * 179.97438 * 14 13 12 36 36 H 1.09002 * 109.47182 * 299.99565 * 14 13 12 37 37 H 1.09005 * 109.47584 * 59.99522 * 14 13 12 38 38 H 1.09001 * 109.47630 * 210.00038 * 15 12 10 39 39 H 1.08998 * 109.47460 * 330.00406 * 15 12 10 40 40 H 0.97002 * 119.99875 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.3011 2.1795 -1.0749 5 7 2.6903 3.2793 -0.7580 6 6 2.7345 3.4212 0.5351 7 6 3.1620 4.6507 1.2946 8 6 2.3037 2.1885 1.0876 9 7 2.1802 1.8425 2.4466 10 6 3.2254 2.0068 3.2815 11 8 4.2684 2.4734 2.8654 12 7 3.1146 1.6538 4.5775 13 6 1.8579 1.0922 5.0788 14 6 1.8852 -0.4304 4.9318 15 6 4.2509 1.8318 5.4849 16 6 4.1827 3.2000 6.1128 17 1 3.3737 3.8698 5.8615 18 6 5.1532 3.5968 7.0082 19 7 5.0935 4.7907 7.5566 20 14 6.5530 2.4387 7.4424 21 1 7.6830 2.6539 6.5033 22 1 7.0053 2.7075 8.8310 23 1 6.0835 1.0337 7.3380 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 4.2481 4.6616 1.3864 30 1 2.8337 5.5412 0.7587 31 1 2.7135 4.6384 2.2880 32 1 1.3415 1.4897 2.7830 33 1 1.7370 1.3535 6.1302 34 1 1.0243 1.4977 4.5055 35 1 0.9503 -0.8484 5.3052 36 1 2.0061 -0.6918 3.8805 37 1 2.7188 -0.8361 5.5052 38 1 4.2153 1.0717 6.2653 39 1 5.1813 1.7349 4.9254 40 1 5.7765 5.0699 8.1863 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089417964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:56 Heat of formation + Delta-G solvation = 31.515176 kcal Electronic energy + Delta-G solvation = -22932.435652 eV Core-core repulsion = 19558.020611 eV Total energy + Delta-G solvation = -3374.415042 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.75818 -39.78464 -36.11930 -35.26291 -34.45468 -33.14221 -32.43599 -30.42242 -29.70557 -28.35537 -27.52982 -24.15162 -23.38093 -23.04809 -21.72906 -20.25979 -19.36658 -17.83747 -17.45267 -17.15152 -16.92161 -15.98537 -15.17230 -14.85258 -14.59991 -13.98916 -13.91084 -13.72889 -13.48820 -13.09922 -12.93233 -12.78061 -12.55419 -12.40718 -12.30928 -11.99003 -11.79017 -11.56487 -11.50527 -11.09145 -11.03053 -10.83401 -10.53142 -10.25033 -10.10038 -9.62700 -9.45927 -9.40933 -8.60557 -8.51291 -7.76671 -6.10481 -4.09236 1.49974 2.33263 2.80200 3.27604 3.32832 3.35331 3.38834 3.73608 4.22275 4.37914 4.45872 4.54092 4.88499 4.95817 5.03119 5.14001 5.21603 5.24553 5.42986 5.52793 5.58095 5.59325 5.65871 5.82570 5.84964 5.91170 5.95552 6.05356 6.08182 6.29574 6.48130 6.51241 6.80094 6.83860 7.18704 7.41883 7.59650 8.38983 8.43568 8.45532 8.92411 9.12615 9.49916 11.02858 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.005244 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.359415 B = 5338.337453 C = 6159.310957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.036 4.036 3 C -0.060 4.060 4 O 0.099 5.901 5 N -0.367 5.367 6 C 0.041 3.959 7 C -0.066 4.066 8 C 0.069 3.931 9 N -0.668 5.668 10 C 0.704 3.296 11 O -0.565 6.565 12 N -0.602 5.602 13 C 0.107 3.893 14 C -0.171 4.171 15 C 0.232 3.768 16 C -0.529 4.529 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.875 3.125 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.403 0.597 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.280 -11.587 -11.207 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 C -0.127 4.127 4 O 0.037 5.963 5 N -0.074 5.074 6 C -0.120 4.120 7 C -0.124 4.124 8 C -0.030 4.030 9 N -0.324 5.324 10 C 0.406 3.594 11 O -0.440 6.440 12 N -0.337 5.337 13 C -0.018 4.018 14 C -0.230 4.230 15 C 0.112 3.888 16 C -0.568 4.568 17 H 0.092 0.908 18 C -0.129 4.129 19 N -0.535 5.535 20 Si 0.702 3.298 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.241 0.759 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.077 -10.330 -12.325 18.977 hybrid contribution 0.244 -0.885 1.353 1.635 sum -9.833 -11.215 -10.971 18.516 Atomic orbital electron populations 1.21793 0.93719 1.02520 1.02688 1.20012 0.96281 0.86558 1.04571 1.24038 1.06324 0.96177 0.86152 1.84828 1.62020 1.17890 1.31540 1.73790 1.18202 0.99713 1.15733 1.23586 1.01120 0.97575 0.89713 1.20108 1.03219 0.90600 0.98437 1.17699 1.07657 0.92432 0.85228 1.42058 1.15512 1.70458 1.04415 1.15827 0.83061 0.79367 0.81149 1.90928 1.27890 1.49526 1.75659 1.47193 1.15173 1.64566 1.06746 1.21403 0.86003 0.92708 1.01659 1.22263 1.02234 0.96705 1.01800 1.19593 0.84084 0.97484 0.87686 1.21338 1.11823 0.99042 1.24555 0.90752 1.24836 0.97465 0.95038 0.95575 1.69896 1.35051 1.18659 1.29932 0.86870 0.83352 0.81626 0.77933 1.19911 1.21093 1.19089 0.91340 0.92361 0.91998 0.89326 0.88950 0.89310 0.91318 0.90255 0.75892 0.89231 0.92168 0.91853 0.93021 0.91959 0.95069 0.94477 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.65 16 2 C -0.04 -0.31 6.50 -27.88 -0.18 -0.49 16 3 C -0.06 -0.79 6.77 -35.16 -0.24 -1.03 16 4 O 0.10 1.46 11.20 16.53 0.19 1.65 16 5 N -0.37 -6.20 12.06 33.56 0.40 -5.79 16 6 C 0.04 0.71 6.96 -81.94 -0.57 0.14 16 7 C -0.07 -1.15 9.07 36.01 0.33 -0.82 16 8 C 0.07 1.10 6.37 -83.24 -0.53 0.57 16 9 N -0.67 -10.34 5.35 -13.99 -0.07 -10.41 16 10 C 0.70 14.15 7.91 -86.92 -0.69 13.46 16 11 O -0.57 -13.82 14.22 5.28 0.08 -13.74 16 12 N -0.60 -11.79 2.46 -180.81 -0.44 -12.23 16 13 C 0.11 1.52 5.90 -4.04 -0.02 1.50 16 14 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 15 C 0.23 5.49 4.23 -5.20 -0.02 5.47 16 16 C -0.53 -14.78 9.94 -34.44 -0.34 -15.12 16 17 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 20 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.69 8.02 -51.93 -0.42 1.27 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.47 7.97 -51.93 -0.41 1.05 16 32 H 0.40 4.87 6.54 -40.82 -0.27 4.60 16 33 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.06 0.71 6.34 -51.93 -0.33 0.38 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 39 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 337.28 15.07 5.08 5.08 Total: -1.00 -34.16 337.28 -6.25 -40.41 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.97 Total: 1.50 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.62 Total: 3.46 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.66 Total: -54.93 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.26 Total: -12.10 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.16 -6.25 -40.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089417964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.924 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds