Wall clock time and date at job start Tue Mar 31 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47504 * 2 1 4 4 O 1.34286 * 126.82334 * 270.17058 * 3 2 1 5 5 N 1.20896 * 111.62861 * 180.29739 * 4 3 2 6 6 C 1.30164 * 111.74513 * 359.72387 * 5 4 3 7 7 C 1.50703 * 126.81201 * 180.02562 * 6 5 4 8 8 C 1.35859 * 126.81837 * 89.99753 * 3 2 1 9 9 N 1.40773 * 128.05979 * 0.02562 * 8 3 2 10 10 C 1.34776 * 120.00555 * 140.82627 * 9 8 3 11 11 O 1.21599 * 119.99932 * 3.24669 * 10 9 8 12 12 N 1.34777 * 119.99937 * 183.25356 * 10 9 8 13 13 C 1.46500 * 120.00294 * 359.97438 * 12 10 9 14 14 C 1.46502 * 119.99738 * 179.97438 * 12 10 9 15 15 H 1.09003 * 109.46937 * 359.97438 * 14 12 10 16 16 C 1.52996 * 109.47373 * 119.99993 * 14 12 10 17 17 C 1.50703 * 109.46851 * 239.99898 * 14 12 10 18 18 H 1.08001 * 119.99880 * 354.20312 * 17 14 12 19 19 C 1.37882 * 120.00162 * 174.20222 * 17 14 12 20 20 N 1.31510 * 120.00262 * 157.18663 * 19 17 14 21 21 Si 1.86801 * 119.99730 * 337.46439 * 19 17 14 22 22 H 1.48499 * 109.47151 * 179.72420 * 21 19 17 23 23 H 1.48502 * 109.47192 * 299.72523 * 21 19 17 24 24 H 1.48504 * 109.46930 * 59.72250 * 21 19 17 25 25 H 1.09009 * 109.46876 * 59.99539 * 1 2 3 26 26 H 1.08992 * 109.47577 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46744 * 300.00445 * 1 2 3 28 28 H 1.09002 * 109.46744 * 239.99555 * 2 1 3 29 29 H 1.09009 * 109.46876 * 120.00461 * 2 1 3 30 30 H 1.08999 * 109.47127 * 278.44636 * 7 6 5 31 31 H 1.09001 * 109.46729 * 38.44539 * 7 6 5 32 32 H 1.08999 * 109.47511 * 158.44896 * 7 6 5 33 33 H 0.97002 * 119.99315 * 320.81658 * 9 8 3 34 34 H 1.08994 * 109.46685 * 270.00262 * 13 12 10 35 35 H 1.08997 * 109.47141 * 29.99695 * 13 12 10 36 36 H 1.09001 * 109.46939 * 150.00189 * 13 12 10 37 37 H 1.09003 * 109.46906 * 174.05073 * 16 14 12 38 38 H 1.09004 * 109.46520 * 294.04690 * 16 14 12 39 39 H 1.08993 * 109.47393 * 54.04740 * 16 14 12 40 40 H 0.97002 * 119.99876 * 355.23411 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2977 2.1806 -1.0749 5 7 2.6931 3.2783 -0.7581 6 6 2.7451 3.4174 0.5350 7 6 3.1862 4.6421 1.2945 8 6 2.3038 2.1883 1.0876 9 7 2.1818 1.8420 2.4466 10 6 3.1095 2.2542 3.3331 11 8 4.0196 2.9742 2.9702 12 7 3.0284 1.8681 4.6219 13 6 1.9316 1.0010 5.0593 14 6 4.0372 2.3158 5.5854 15 1 4.7674 2.9476 5.0797 16 6 3.3585 3.1126 6.7013 17 6 4.7340 1.1173 6.1763 18 1 4.3918 0.1213 5.9369 19 6 5.8085 1.2923 7.0225 20 7 6.1348 0.3460 7.8753 21 14 6.7957 2.8770 6.9629 22 1 7.8858 2.8192 7.9697 23 1 7.3812 3.0449 5.6085 24 1 5.9050 4.0267 7.2631 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 4.2748 4.6653 1.3457 31 1 2.8273 5.5354 0.7833 32 1 2.7757 4.6113 2.3037 33 1 1.4298 1.3067 2.7449 34 1 1.0895 1.6141 5.3799 35 1 1.6218 0.3620 4.2324 36 1 2.2677 0.3817 5.8909 37 1 4.0906 3.3552 7.4715 38 1 2.9449 4.0336 6.2901 39 1 2.5564 2.5170 7.1370 40 1 5.5797 -0.4452 7.9578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089440628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:59 Heat of formation + Delta-G solvation = 34.062547 kcal Electronic energy + Delta-G solvation = -22971.103560 eV Core-core repulsion = 19596.798981 eV Total energy + Delta-G solvation = -3374.304579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.79385 -39.90383 -36.34103 -35.27978 -34.40367 -33.45663 -32.46343 -30.30448 -29.30835 -28.32110 -26.41760 -24.85678 -24.12406 -23.12379 -21.04297 -20.41181 -19.07282 -17.80600 -17.54765 -17.51638 -17.16827 -15.92014 -15.33283 -15.02413 -14.70131 -13.94736 -13.79113 -13.42140 -13.24235 -13.10355 -12.89869 -12.70707 -12.59562 -12.29060 -12.07483 -11.86859 -11.81882 -11.59629 -11.49746 -11.38243 -11.10237 -10.55089 -10.46117 -10.13145 -9.82071 -9.51913 -9.47534 -9.18591 -8.45075 -8.32037 -7.81752 -6.55112 -4.17716 1.47366 2.30188 2.72035 3.30783 3.37776 3.47910 3.62055 3.64981 4.23530 4.44080 4.44780 4.49205 4.84897 4.95058 5.00285 5.12570 5.16730 5.40620 5.56753 5.57782 5.63675 5.76395 5.80052 5.88610 5.91414 6.04516 6.10419 6.27556 6.36494 6.49022 6.52960 6.67901 6.77230 6.89635 7.32142 7.48239 7.84832 8.27259 8.35149 8.40117 8.75635 9.01045 9.47692 10.80370 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022956 B = 0.005006 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.419526 B = 5591.390448 C = 6167.180530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.037 4.037 3 C -0.072 4.072 4 O 0.100 5.900 5 N -0.366 5.366 6 C 0.039 3.961 7 C -0.055 4.055 8 C 0.071 3.929 9 N -0.663 5.663 10 C 0.698 3.302 11 O -0.575 6.575 12 N -0.597 5.597 13 C 0.084 3.916 14 C 0.251 3.749 15 H 0.057 0.943 16 C -0.156 4.156 17 C -0.618 4.618 18 H 0.062 0.938 19 C 0.044 3.956 20 N -0.893 5.893 21 Si 1.031 2.969 22 H -0.284 1.284 23 H -0.279 1.279 24 H -0.275 1.275 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.405 0.595 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.046 0.954 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.345 0.580 -11.613 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.075 4.075 3 C -0.139 4.139 4 O 0.038 5.962 5 N -0.073 5.073 6 C -0.122 4.122 7 C -0.113 4.113 8 C -0.029 4.029 9 N -0.318 5.318 10 C 0.400 3.600 11 O -0.452 6.452 12 N -0.331 5.331 13 C -0.061 4.061 14 C 0.150 3.850 15 H 0.074 0.926 16 C -0.214 4.214 17 C -0.656 4.656 18 H 0.080 0.920 19 C -0.163 4.163 20 N -0.525 5.525 21 Si 0.858 3.142 22 H -0.209 1.209 23 H -0.205 1.205 24 H -0.201 1.201 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.243 0.757 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.017 2.640 -12.146 16.609 hybrid contribution -1.877 -1.585 0.341 2.480 sum -12.894 1.055 -11.805 17.513 Atomic orbital electron populations 1.21802 0.93784 1.02542 1.02633 1.20010 0.96240 0.86550 1.04683 1.23838 1.08001 0.96275 0.85753 1.84815 1.62058 1.17900 1.31468 1.73772 1.17856 0.99979 1.15694 1.23476 1.01735 0.97433 0.89516 1.20132 1.02883 0.90007 0.98233 1.17829 1.07056 0.92865 0.85125 1.42081 1.28282 1.58155 1.03237 1.15920 0.81969 0.80938 0.81157 1.90910 1.35307 1.41129 1.77812 1.47269 1.28999 1.50364 1.06454 1.21581 0.89484 0.94131 1.00857 1.19134 0.85499 0.95795 0.84604 0.92554 1.22444 1.00995 0.97928 1.00078 1.22098 1.18730 0.92630 1.32159 0.92028 1.25618 0.95875 1.03374 0.91438 1.70872 1.41556 1.09786 1.30317 0.84225 0.77123 0.75733 0.77081 1.20924 1.20467 1.20123 0.91983 0.91305 0.92458 0.89208 0.88980 0.89474 0.92206 0.90174 0.75679 0.93648 0.93342 0.89421 0.91835 0.95527 0.93509 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.04 -0.33 6.50 -27.89 -0.18 -0.51 16 3 C -0.07 -0.94 6.77 -35.16 -0.24 -1.18 16 4 O 0.10 1.47 11.20 16.53 0.19 1.65 16 5 N -0.37 -6.04 12.06 33.56 0.40 -5.64 16 6 C 0.04 0.66 6.99 -81.94 -0.57 0.09 16 7 C -0.06 -0.89 8.53 36.01 0.31 -0.59 16 8 C 0.07 1.11 6.70 -83.24 -0.56 0.55 16 9 N -0.66 -10.16 5.32 -13.99 -0.07 -10.24 16 10 C 0.70 13.72 7.72 -86.92 -0.67 13.05 16 11 O -0.57 -13.13 11.70 5.28 0.06 -13.07 16 12 N -0.60 -11.83 2.75 -181.01 -0.50 -12.33 16 13 C 0.08 1.28 9.05 59.85 0.54 1.82 16 14 C 0.25 5.88 2.23 -69.08 -0.15 5.73 16 15 H 0.06 1.45 5.47 -51.93 -0.28 1.17 16 16 C -0.16 -3.27 9.01 37.16 0.33 -2.93 16 17 C -0.62 -16.50 8.31 -34.44 -0.29 -16.78 16 18 H 0.06 1.75 7.37 -52.49 -0.39 1.36 16 19 C 0.04 1.23 5.22 -17.82 -0.09 1.13 16 20 N -0.89 -26.23 13.70 55.43 0.76 -25.47 16 21 Si 1.03 24.90 26.43 -169.99 -4.49 20.40 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.12 6.09 56.52 0.34 -5.77 16 25 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.37 6.62 -51.93 -0.34 1.02 16 33 H 0.41 4.86 6.60 -40.82 -0.27 4.59 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.58 6.41 -51.93 -0.33 0.25 16 36 H 0.09 1.50 6.91 -51.93 -0.36 1.14 16 37 H 0.06 1.39 5.42 -51.93 -0.28 1.11 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.91 7.48 -51.93 -0.39 0.52 16 40 H 0.27 7.81 8.73 -40.82 -0.36 7.45 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -32.08 324.21 -5.61 -37.69 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.64 Total: 2.41 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -1.20 Total: -0.30 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.59 Total: -53.67 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.25 Total: -11.42 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -4.49 Total: 20.40 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.08 -5.61 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089440628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.754 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds