Wall clock time and date at job start Tue Mar 31 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47267 * 2 1 4 4 C 1.46905 * 111.00207 * 287.87833 * 3 2 1 5 5 C 1.50703 * 109.46666 * 297.49633 * 4 3 2 6 6 H 1.07996 * 120.00419 * 4.44333 * 5 4 3 7 7 C 1.37882 * 119.99768 * 184.44327 * 5 4 3 8 8 N 1.31513 * 119.99735 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99926 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47331 * 89.99590 * 9 7 5 11 11 H 1.48500 * 109.46880 * 209.99814 * 9 7 5 12 12 H 1.48497 * 109.46892 * 329.99497 * 9 7 5 13 13 C 1.46898 * 111.00268 * 163.92037 * 3 2 1 14 14 H 1.09004 * 109.47287 * 63.95706 * 13 3 2 15 15 C 1.53005 * 109.47392 * 183.95286 * 13 3 2 16 16 C 1.50695 * 109.47357 * 303.95439 * 13 3 2 17 17 C 1.35168 * 125.60866 * 139.99207 * 16 13 3 18 18 C 1.40320 * 107.12581 * 180.02562 * 17 16 13 19 19 C 1.36640 * 106.70097 * 0.02562 * 18 17 16 20 20 C 1.46472 * 125.99315 * 180.02562 * 19 18 17 21 21 O 1.21618 * 120.00080 * 0.02562 * 20 19 18 22 22 O 1.34901 * 119.99665 * 179.97438 * 20 19 18 23 23 C 1.45195 * 116.99660 * 180.02562 * 22 20 19 24 24 O 1.33909 * 125.60916 * 320.02683 * 16 13 3 25 25 H 1.09008 * 109.46878 * 299.69603 * 1 2 3 26 26 H 1.09000 * 109.47301 * 59.69849 * 1 2 3 27 27 H 1.09003 * 109.47290 * 179.69692 * 1 2 3 28 28 H 1.09002 * 109.47193 * 240.00162 * 2 1 3 29 29 H 1.09000 * 109.47650 * 120.00066 * 2 1 3 30 30 H 1.08992 * 109.47035 * 57.49444 * 4 3 2 31 31 H 1.08997 * 109.47382 * 177.49797 * 4 3 2 32 32 H 0.97007 * 119.99664 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.46953 * 180.02562 * 15 13 3 34 34 H 1.09000 * 109.46925 * 300.00609 * 15 13 3 35 35 H 1.09004 * 109.46562 * 59.99975 * 15 13 3 36 36 H 1.07999 * 126.43940 * 359.97438 * 17 16 13 37 37 H 1.07993 * 126.64791 * 180.02562 * 18 17 16 38 38 H 1.08996 * 109.47560 * 60.00157 * 23 22 20 39 39 H 1.09000 * 109.46902 * 180.02562 * 23 22 20 40 40 H 1.09002 * 109.47256 * 299.99859 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7982 2.0217 -1.3052 5 6 2.5812 1.2862 -2.3621 6 1 3.1254 0.3895 -2.1050 7 6 2.6028 1.7581 -3.6575 8 7 1.9396 2.8498 -3.9707 9 14 3.5727 0.8460 -4.9678 10 1 2.7002 -0.1666 -5.6146 11 1 4.0529 1.8108 -5.9895 12 1 4.7362 0.1690 -4.3408 13 6 3.4375 1.4421 0.3798 14 1 4.0354 0.9220 -0.3686 15 6 3.8845 2.9029 0.4644 16 6 3.6254 0.7809 1.7209 17 6 4.6591 -0.0187 2.0663 18 6 4.4459 -0.4192 3.3941 19 6 3.2774 0.1632 3.7972 20 6 2.6577 0.0258 5.1172 21 8 3.1902 -0.6575 5.9708 22 8 1.4968 0.6580 5.3864 23 6 0.9406 0.4772 6.7153 24 8 2.7954 0.8882 2.7662 25 1 -0.3633 0.5091 0.8928 26 1 -0.3634 0.5185 -0.8873 27 1 -0.3634 -1.0277 -0.0054 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.7367 1.9883 -1.5503 31 1 2.1292 3.0594 -1.2641 32 1 1.9551 3.1820 -4.8820 33 1 4.9366 2.9452 0.7458 34 1 3.7486 3.3812 -0.5056 35 1 3.2865 3.4230 1.2129 36 1 5.4921 -0.2976 1.4380 37 1 5.0821 -1.0630 3.9832 38 1 1.6505 0.8395 7.4588 39 1 0.0092 1.0373 6.7986 40 1 0.7441 -0.5813 6.8860 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091781606.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:12 Heat of formation + Delta-G solvation = -64.850156 kcal Electronic energy + Delta-G solvation = -22587.009499 eV Core-core repulsion = 19176.122992 eV Total energy + Delta-G solvation = -3410.886507 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.61503 -40.21616 -37.53858 -36.59729 -33.14771 -32.71131 -32.10271 -29.99608 -28.53860 -27.44543 -26.41097 -24.29533 -22.93406 -21.83270 -21.28138 -20.44002 -19.31474 -18.33237 -17.13441 -16.77538 -16.46320 -15.93915 -15.49326 -15.06803 -14.44229 -14.10964 -13.59441 -13.50474 -13.31724 -13.08304 -13.07071 -12.80661 -12.33621 -12.31640 -12.13304 -11.64580 -11.28813 -11.07813 -11.01231 -10.96770 -10.85412 -10.83998 -10.73311 -10.30290 -10.09532 -10.01063 -9.92389 -9.62538 -8.50687 -8.41143 -7.30913 -6.10554 -4.20161 0.91364 2.33702 2.38029 2.91589 3.10743 3.22367 3.30152 3.31572 4.33764 4.60531 4.76042 4.93402 4.96125 5.01426 5.08102 5.20998 5.34177 5.62394 5.72071 5.78331 5.83440 5.86389 5.96310 6.09422 6.11405 6.16027 6.27992 6.37847 6.50070 6.56822 6.73990 6.79254 6.87722 7.03164 7.20982 7.46955 7.60661 7.83306 7.93196 8.14516 8.20010 8.89059 9.46975 10.94314 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027665 B = 0.004248 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.864706 B = 6589.470130 C = 6937.413047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.053 3.947 3 N -0.533 5.533 4 C 0.183 3.817 5 C -0.554 4.554 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.154 3.846 14 H 0.088 0.912 15 C -0.140 4.140 16 C 0.082 3.918 17 C -0.245 4.245 18 C -0.096 4.096 19 C -0.095 4.095 20 C 0.558 3.442 21 O -0.499 6.499 22 O -0.345 6.345 23 C 0.037 3.963 24 O -0.129 6.129 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.565 -3.909 14.742 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.075 4.075 3 N -0.258 5.258 4 C 0.058 3.942 5 C -0.593 4.593 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.715 3.285 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.045 3.955 14 H 0.105 0.895 15 C -0.197 4.197 16 C 0.027 3.973 17 C -0.264 4.264 18 C -0.115 4.115 19 C -0.146 4.146 20 C 0.404 3.596 21 O -0.390 6.390 22 O -0.261 6.261 23 C -0.057 4.057 24 O -0.022 6.022 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.176 0.824 37 H 0.177 0.823 38 H 0.083 0.917 39 H 0.122 0.878 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.076 -3.530 15.255 15.695 hybrid contribution 1.106 -1.170 -1.282 2.058 sum 2.182 -4.699 13.973 14.903 Atomic orbital electron populations 1.21661 0.95671 1.00047 1.02212 1.21944 0.95796 0.90316 0.99465 1.62683 1.13078 1.16503 1.33575 1.19885 0.97397 0.95102 0.81809 1.21688 1.31733 1.11138 0.94704 0.92540 1.24922 0.95283 0.94774 0.98471 1.69935 1.41427 1.21614 1.19554 0.86678 0.80388 0.79707 0.81765 1.20634 1.21112 1.19929 1.20357 0.93473 0.96340 0.85308 0.89469 1.21838 0.99646 0.94220 1.04039 1.23611 0.88309 0.96068 0.89262 1.21609 1.02883 1.05206 0.96709 1.21877 0.94895 0.99246 0.95517 1.20561 0.98683 1.06708 0.88612 1.19224 0.78840 0.76474 0.85060 1.90910 1.63371 1.38704 1.45990 1.86718 1.36879 1.66710 1.35815 1.23323 0.98938 1.02835 0.80602 1.84242 1.44395 1.54943 1.18664 0.92979 0.91987 0.93736 0.93366 0.93611 0.94638 0.93996 0.92706 0.92930 0.89647 0.92264 0.82404 0.82302 0.91738 0.87753 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.97 37.15 0.37 -2.10 16 2 C 0.05 1.03 5.37 -3.83 -0.02 1.01 16 3 N -0.53 -10.91 4.52 -229.48 -1.04 -11.94 16 4 C 0.18 4.37 4.64 -4.97 -0.02 4.35 16 5 C -0.55 -14.11 7.42 -34.44 -0.26 -14.36 16 6 H 0.06 1.42 5.92 -52.49 -0.31 1.11 16 7 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 9 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.15 2.82 2.25 -68.87 -0.15 2.67 16 14 H 0.09 1.68 6.63 -51.93 -0.34 1.34 16 15 C -0.14 -2.39 8.94 37.16 0.33 -2.06 16 16 C 0.08 1.37 4.34 -35.40 -0.15 1.22 16 17 C -0.24 -3.53 10.76 -39.89 -0.43 -3.96 16 18 C -0.10 -1.34 10.62 -39.38 -0.42 -1.76 16 19 C -0.10 -1.50 7.18 -36.84 -0.26 -1.77 16 20 C 0.56 8.41 7.93 34.05 0.27 8.68 16 21 O -0.50 -7.89 16.66 -19.35 -0.32 -8.21 16 22 O -0.35 -4.78 10.58 -42.48 -0.45 -5.23 16 23 C 0.04 0.34 10.57 101.05 1.07 1.41 16 24 O -0.13 -2.25 10.39 4.74 0.05 -2.20 16 25 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 26 H 0.06 1.20 6.71 -51.93 -0.35 0.85 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 1.01 6.27 -51.93 -0.33 0.68 16 29 H 0.05 0.85 6.25 -51.93 -0.32 0.52 16 30 H 0.04 0.92 6.62 -51.93 -0.34 0.58 16 31 H 0.04 1.06 6.23 -51.93 -0.32 0.74 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.63 6.37 -51.93 -0.33 1.29 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -28.89 334.15 -6.38 -35.26 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.59 Total: 0.87 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 0.22 Total: -4.96 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.30 Total: -35.97 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.72 Total: -15.64 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.89 -6.38 -35.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091781606.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.588 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds