Wall clock time and date at job start Tue Mar 31 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47066 * 2 1 4 4 C 1.46906 * 110.99989 * 199.77783 * 3 2 1 5 5 C 1.50705 * 109.46818 * 70.54987 * 4 3 2 6 6 H 1.07996 * 120.00342 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99504 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00318 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99843 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46981 * 89.99949 * 9 7 5 11 11 H 1.48499 * 109.47132 * 209.99797 * 9 7 5 12 12 H 1.48496 * 109.47326 * 330.00025 * 9 7 5 13 13 C 1.46897 * 111.00250 * 75.82429 * 3 2 1 14 14 H 1.09001 * 109.46991 * 308.94285 * 13 3 2 15 15 C 1.52993 * 109.47429 * 188.93680 * 13 3 2 16 16 C 1.50703 * 109.47017 * 68.93447 * 13 3 2 17 17 C 1.35162 * 125.60994 * 228.45204 * 16 13 3 18 18 C 1.40311 * 107.12991 * 180.02562 * 17 16 13 19 19 C 1.36644 * 106.69878 * 0.02562 * 18 17 16 20 20 C 1.46468 * 125.99572 * 179.73075 * 19 18 17 21 21 O 1.21625 * 120.00167 * 0.02562 * 20 19 18 22 22 O 1.34899 * 120.00201 * 180.02562 * 20 19 18 23 23 C 1.45194 * 117.00345 * 180.02562 * 22 20 19 24 24 O 1.33910 * 125.60652 * 48.48802 * 16 13 3 25 25 H 1.08998 * 109.47465 * 62.19565 * 1 2 3 26 26 H 1.09007 * 109.47138 * 182.20052 * 1 2 3 27 27 H 1.09005 * 109.47138 * 302.19289 * 1 2 3 28 28 H 1.09009 * 109.46915 * 239.99820 * 2 1 3 29 29 H 1.08995 * 109.47098 * 120.00166 * 2 1 3 30 30 H 1.08993 * 109.47171 * 190.55318 * 4 3 2 31 31 H 1.08998 * 109.47184 * 310.55301 * 4 3 2 32 32 H 0.96997 * 120.00192 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47190 * 60.00002 * 15 13 3 34 34 H 1.09000 * 109.47285 * 179.97438 * 15 13 3 35 35 H 1.09001 * 109.47528 * 300.00276 * 15 13 3 36 36 H 1.07999 * 126.43725 * 0.06759 * 17 16 13 37 37 H 1.07992 * 126.65086 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.47381 * 59.99166 * 23 22 20 39 39 H 1.09004 * 109.47501 * 180.02562 * 23 22 20 40 40 H 1.09003 * 109.46892 * 299.99625 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4119 1.4511 -0.4641 5 6 3.4637 1.1552 -1.9409 6 1 2.5535 0.9400 -2.4808 7 6 4.6732 1.1593 -2.6027 8 7 5.7816 1.4219 -1.9453 9 14 4.7374 0.7933 -4.4334 10 1 4.5977 2.0594 -5.1965 11 1 6.0370 0.1560 -4.7654 12 1 3.6287 -0.1266 -4.7935 13 6 1.8785 1.9933 1.3296 14 1 0.8585 1.8524 1.6872 15 6 2.1860 3.4894 1.2413 16 6 2.8410 1.3382 2.2865 17 6 2.5323 0.8708 3.5165 18 6 3.7108 0.3436 4.0661 19 6 4.6923 0.5188 3.1317 20 6 6.0957 0.1237 3.2729 21 8 6.4762 -0.4140 4.2953 22 8 6.9662 0.3562 2.2689 23 6 8.3406 -0.0624 2.4779 24 8 4.1430 1.1242 2.0581 25 1 -0.3634 0.4793 -0.9090 26 1 -0.3634 -1.0270 0.0395 27 1 -0.3634 0.5475 0.8697 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8094 2.4490 -0.2792 31 1 4.0098 0.7163 0.0749 32 1 6.6326 1.4244 -2.4109 33 1 1.4897 3.9632 0.5492 34 1 2.0808 3.9408 2.2278 35 1 3.2060 3.6303 0.8837 36 1 1.5609 0.8973 3.9877 37 1 3.8210 -0.1114 5.0392 38 1 8.3708 -1.1385 2.6485 39 1 8.9333 0.1830 1.5966 40 1 8.7499 0.4546 3.3459 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091781609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:14 Heat of formation + Delta-G solvation = -61.386986 kcal Electronic energy + Delta-G solvation = -23109.498504 eV Core-core repulsion = 19698.762171 eV Total energy + Delta-G solvation = -3410.736333 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.50424 -39.93904 -37.49619 -36.29384 -33.09435 -32.59014 -31.98871 -29.77896 -28.98595 -27.30594 -26.21451 -23.94858 -22.42920 -22.15211 -21.45461 -20.35449 -19.35885 -18.01613 -16.84933 -16.63614 -16.33611 -15.63148 -15.28600 -14.95831 -14.35514 -14.06666 -13.83311 -13.29026 -13.21533 -13.08514 -12.92559 -12.68864 -12.23932 -12.09539 -11.96661 -11.81267 -11.42478 -11.22241 -11.11000 -10.93352 -10.67427 -10.66782 -10.62893 -10.39111 -10.15559 -9.79280 -9.68838 -9.19600 -8.42132 -8.31936 -7.43466 -5.96562 -3.98673 1.10188 2.48537 2.61456 3.11756 3.30164 3.33800 3.39544 3.42740 4.43312 4.73203 4.83453 5.06702 5.09755 5.25527 5.32615 5.37186 5.44586 5.60313 5.66742 5.71815 5.75232 5.86649 5.90934 5.95497 6.00739 6.15521 6.28282 6.30543 6.42500 6.52943 6.63748 6.64917 6.74172 7.13052 7.30335 7.47191 7.80294 7.87473 8.07632 8.16818 8.52066 9.08050 9.63918 11.12694 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012116 B = 0.007514 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.398289 B = 3725.410077 C = 5401.562548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 N -0.521 5.521 4 C 0.185 3.815 5 C -0.510 4.510 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.149 3.851 14 H 0.104 0.896 15 C -0.144 4.144 16 C 0.030 3.970 17 C -0.241 4.241 18 C -0.108 4.108 19 C -0.085 4.085 20 C 0.555 3.445 21 O -0.505 6.505 22 O -0.331 6.331 23 C 0.039 3.961 24 O -0.113 6.113 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.021 0.979 30 H 0.037 0.963 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 -0.680 10.101 10.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 N -0.243 5.243 4 C 0.061 3.939 5 C -0.549 4.549 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 C 0.038 3.962 14 H 0.122 0.878 15 C -0.201 4.201 16 C -0.027 4.027 17 C -0.261 4.261 18 C -0.128 4.128 19 C -0.136 4.136 20 C 0.401 3.599 21 O -0.397 6.397 22 O -0.245 6.245 23 C -0.055 4.055 24 O -0.006 6.006 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.172 0.828 37 H 0.175 0.825 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.633 -0.478 9.715 10.383 hybrid contribution 0.818 -0.871 -0.142 1.203 sum -2.816 -1.349 9.573 10.069 Atomic orbital electron populations 1.21787 0.96284 1.00271 1.01684 1.22039 0.94459 0.90027 1.01209 1.62444 1.26402 1.17211 1.18289 1.20022 0.80545 0.97798 0.95500 1.21111 0.92988 1.47566 0.93222 0.91976 1.24965 0.95679 0.95640 0.98151 1.69993 0.97936 1.49059 1.35702 0.86574 0.77202 0.78413 0.85644 1.20709 1.21426 1.19967 1.20941 0.93714 0.94917 0.86605 0.87839 1.21888 1.04047 0.92941 1.01260 1.24734 0.82744 0.98359 0.96863 1.21565 1.00060 1.08414 0.96051 1.21826 0.91112 1.00175 0.99646 1.20788 0.92018 1.10749 0.90002 1.19298 0.84158 0.75213 0.81204 1.90882 1.78056 1.41139 1.29579 1.86847 1.20982 1.74618 1.42093 1.23312 0.78455 1.00390 1.03344 1.84642 1.21622 1.58395 1.35925 0.92089 0.93329 0.93648 0.89486 0.96069 0.94528 0.97053 0.93054 0.90786 0.92770 0.91056 0.82797 0.82508 0.91927 0.87595 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 10.05 37.16 0.37 -1.73 16 2 C 0.05 0.95 5.43 -3.83 -0.02 0.93 16 3 N -0.52 -10.62 4.35 -229.48 -1.00 -11.62 16 4 C 0.19 4.69 3.41 -4.97 -0.02 4.67 16 5 C -0.51 -14.09 8.31 -34.44 -0.29 -14.37 16 6 H 0.06 1.70 7.61 -52.49 -0.40 1.30 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.15 2.50 2.72 -68.87 -0.19 2.31 16 14 H 0.10 1.45 6.59 -51.93 -0.34 1.11 16 15 C -0.14 -2.28 9.11 37.15 0.34 -1.94 16 16 C 0.03 0.53 4.62 -35.40 -0.16 0.37 16 17 C -0.24 -3.60 10.75 -39.90 -0.43 -4.03 16 18 C -0.11 -1.70 10.62 -39.38 -0.42 -2.12 16 19 C -0.08 -1.61 7.18 -36.84 -0.26 -1.87 16 20 C 0.56 10.52 7.93 34.05 0.27 10.79 16 21 O -0.51 -9.52 16.66 -19.36 -0.32 -9.85 16 22 O -0.33 -6.36 10.58 -42.48 -0.45 -6.81 16 23 C 0.04 0.54 10.57 101.05 1.07 1.61 16 24 O -0.11 -2.37 7.69 4.74 0.04 -2.33 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.59 6.74 -51.93 -0.35 0.24 16 28 H 0.09 1.84 6.93 -51.92 -0.36 1.48 16 29 H 0.02 0.40 7.03 -51.93 -0.37 0.03 16 30 H 0.04 0.99 5.91 -51.93 -0.31 0.69 16 31 H 0.01 0.33 5.94 -51.93 -0.31 0.02 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.33 6.26 -51.93 -0.33 1.01 16 36 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 334.03 15.07 5.03 5.03 Total: -1.00 -31.63 334.03 -6.52 -38.15 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.70 Total: 0.17 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 0.17 Total: -3.87 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.26 Total: -37.00 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.74 Total: -18.98 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.63 -6.52 -38.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091781609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.237 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds