Wall clock time and date at job start Tue Mar 31 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47066 * 2 1 4 4 C 1.46906 * 110.99989 * 199.77783 * 3 2 1 5 5 C 1.50705 * 109.46818 * 70.54987 * 4 3 2 6 6 H 1.07996 * 120.00342 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99504 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00318 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99843 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46981 * 89.99949 * 9 7 5 11 11 H 1.48499 * 109.47132 * 209.99797 * 9 7 5 12 12 H 1.48496 * 109.47326 * 330.00025 * 9 7 5 13 13 C 1.46897 * 111.00250 * 75.82429 * 3 2 1 14 14 H 1.09001 * 109.46991 * 308.94285 * 13 3 2 15 15 C 1.52993 * 109.47429 * 188.93680 * 13 3 2 16 16 C 1.50703 * 109.47017 * 68.93447 * 13 3 2 17 17 C 1.35162 * 125.60994 * 228.45204 * 16 13 3 18 18 C 1.40311 * 107.12991 * 180.02562 * 17 16 13 19 19 C 1.36644 * 106.69878 * 0.02562 * 18 17 16 20 20 C 1.46468 * 125.99572 * 179.73075 * 19 18 17 21 21 O 1.21625 * 120.00167 * 0.02562 * 20 19 18 22 22 O 1.34899 * 120.00201 * 180.02562 * 20 19 18 23 23 C 1.45194 * 117.00345 * 180.02562 * 22 20 19 24 24 O 1.33910 * 125.60652 * 48.48802 * 16 13 3 25 25 H 1.08998 * 109.47465 * 62.19565 * 1 2 3 26 26 H 1.09007 * 109.47138 * 182.20052 * 1 2 3 27 27 H 1.09005 * 109.47138 * 302.19289 * 1 2 3 28 28 H 1.09009 * 109.46915 * 239.99820 * 2 1 3 29 29 H 1.08995 * 109.47098 * 120.00166 * 2 1 3 30 30 H 1.08993 * 109.47171 * 190.55318 * 4 3 2 31 31 H 1.08998 * 109.47184 * 310.55301 * 4 3 2 32 32 H 0.96997 * 120.00192 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47190 * 60.00002 * 15 13 3 34 34 H 1.09000 * 109.47285 * 179.97438 * 15 13 3 35 35 H 1.09001 * 109.47528 * 300.00276 * 15 13 3 36 36 H 1.07999 * 126.43725 * 0.06759 * 17 16 13 37 37 H 1.07992 * 126.65086 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.47381 * 59.99166 * 23 22 20 39 39 H 1.09004 * 109.47501 * 180.02562 * 23 22 20 40 40 H 1.09003 * 109.46892 * 299.99625 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4119 1.4511 -0.4641 5 6 3.4637 1.1552 -1.9409 6 1 2.5535 0.9400 -2.4808 7 6 4.6732 1.1593 -2.6027 8 7 5.7816 1.4219 -1.9453 9 14 4.7374 0.7933 -4.4334 10 1 4.5977 2.0594 -5.1965 11 1 6.0370 0.1560 -4.7654 12 1 3.6287 -0.1266 -4.7935 13 6 1.8785 1.9933 1.3296 14 1 0.8585 1.8524 1.6872 15 6 2.1860 3.4894 1.2413 16 6 2.8410 1.3382 2.2865 17 6 2.5323 0.8708 3.5165 18 6 3.7108 0.3436 4.0661 19 6 4.6923 0.5188 3.1317 20 6 6.0957 0.1237 3.2729 21 8 6.4762 -0.4140 4.2953 22 8 6.9662 0.3562 2.2689 23 6 8.3406 -0.0624 2.4779 24 8 4.1430 1.1242 2.0581 25 1 -0.3634 0.4793 -0.9090 26 1 -0.3634 -1.0270 0.0395 27 1 -0.3634 0.5475 0.8697 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8094 2.4490 -0.2792 31 1 4.0098 0.7163 0.0749 32 1 6.6326 1.4244 -2.4109 33 1 1.4897 3.9632 0.5492 34 1 2.0808 3.9408 2.2278 35 1 3.2060 3.6303 0.8837 36 1 1.5609 0.8973 3.9877 37 1 3.8210 -0.1114 5.0392 38 1 8.3708 -1.1385 2.6485 39 1 8.9333 0.1830 1.5966 40 1 8.7499 0.4546 3.3459 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091781609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:14 Heat of formation + Delta-G solvation = -81.753934 kcal Electronic energy + Delta-G solvation = -23110.381681 eV Core-core repulsion = 19698.762171 eV Total energy + Delta-G solvation = -3411.619510 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.86242 -41.34596 -39.03695 -37.70577 -34.90468 -34.19673 -33.35689 -31.28766 -30.46348 -28.51707 -28.01493 -25.39791 -24.22400 -23.50439 -22.78447 -21.81120 -20.78353 -19.40801 -18.58115 -18.19454 -17.88964 -17.09570 -16.78483 -16.65267 -15.99143 -15.66971 -15.14647 -14.78130 -14.54605 -14.37040 -14.19870 -14.12938 -13.88033 -13.71620 -13.16028 -13.11482 -12.98806 -12.82218 -12.56768 -12.52826 -12.33277 -12.20493 -12.08109 -11.94540 -11.79223 -11.38686 -11.23866 -11.04005 -10.53321 -9.69180 -9.11319 -8.12126 -6.22316 -0.28130 1.20347 1.33695 1.40591 1.41781 1.52184 1.75789 2.00978 2.42217 3.18260 3.25407 3.49889 3.80719 3.87520 4.14022 4.16584 4.23762 4.25719 4.37127 4.47970 4.56113 4.58252 4.65124 4.74245 4.79215 4.88264 4.96371 5.06359 5.07893 5.21750 5.30351 5.32404 5.39375 5.42698 5.55239 5.70775 5.87448 6.14383 6.35450 6.48945 6.63377 6.94128 7.45224 8.96956 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012116 B = 0.007514 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.398289 B = 3725.410077 C = 5401.562548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.052 3.948 3 N -0.526 5.526 4 C 0.209 3.791 5 C -0.525 4.525 6 H 0.060 0.940 7 C 0.003 3.997 8 N -0.924 5.924 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.146 3.854 14 H 0.146 0.854 15 C -0.139 4.139 16 C 0.006 3.994 17 C -0.215 4.215 18 C -0.089 4.089 19 C -0.125 4.125 20 C 0.552 3.448 21 O -0.512 6.512 22 O -0.363 6.363 23 C 0.031 3.969 24 O -0.155 6.155 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.017 0.983 30 H 0.008 0.992 31 H -0.021 1.021 32 H 0.261 0.739 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.030 0.970 36 H 0.200 0.800 37 H 0.185 0.815 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 -0.970 11.083 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 N -0.249 5.249 4 C 0.084 3.916 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.564 5.564 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.036 3.964 14 H 0.164 0.836 15 C -0.197 4.197 16 C -0.049 4.049 17 C -0.234 4.234 18 C -0.108 4.108 19 C -0.174 4.174 20 C 0.399 3.601 21 O -0.405 6.405 22 O -0.279 6.279 23 C -0.062 4.062 24 O -0.050 6.050 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.026 0.974 31 H -0.004 1.004 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.217 0.783 37 H 0.203 0.797 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.060 -0.769 10.707 12.327 hybrid contribution 1.566 -0.772 -0.375 1.786 sum -4.494 -1.542 10.332 11.372 Atomic orbital electron populations 1.21695 0.92407 1.02074 1.02597 1.22038 0.97422 0.88747 0.99377 1.62348 1.22974 1.18391 1.21196 1.19493 0.83069 0.94945 0.94125 1.21484 0.92993 1.47152 0.94728 0.92159 1.25845 0.95317 0.95459 1.02896 1.70141 0.98477 1.50193 1.37595 0.85509 0.77362 0.78525 0.79959 1.19879 1.21123 1.19018 1.21196 0.95609 0.94758 0.84789 0.83646 1.21862 1.01640 0.93006 1.03145 1.25017 0.82039 0.99484 0.98396 1.22026 1.01361 1.05662 0.94393 1.22267 0.90394 0.98392 0.99788 1.21170 0.92751 1.12697 0.90828 1.19438 0.84489 0.75105 0.81069 1.90846 1.78322 1.41726 1.29557 1.86823 1.23120 1.75062 1.42909 1.23626 0.76475 1.01233 1.04870 1.84577 1.23381 1.59597 1.37414 0.92602 0.91255 0.91088 0.92946 0.96426 0.97367 1.00382 0.93054 0.89974 0.89545 0.95130 0.78274 0.79747 0.90993 0.86190 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 10.05 71.98 0.72 -2.73 16 2 C 0.05 1.93 5.43 86.30 0.47 2.40 16 3 N -0.53 -21.51 4.35 -879.93 -3.83 -25.34 16 4 C 0.21 11.09 3.41 85.56 0.29 11.38 16 5 C -0.53 -30.02 8.31 25.60 0.21 -29.80 16 6 H 0.06 3.38 7.61 -2.91 -0.02 3.36 16 7 C 0.00 0.19 5.46 84.65 0.46 0.66 16 8 N -0.92 -56.65 13.29 21.45 0.28 -56.36 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 C 0.15 4.67 2.72 44.17 0.12 4.79 16 14 H 0.15 3.42 6.59 -2.39 -0.02 3.40 16 15 C -0.14 -4.30 9.11 71.98 0.66 -3.64 16 16 C 0.01 0.21 4.62 24.98 0.12 0.33 16 17 C -0.22 -5.71 10.75 22.07 0.24 -5.47 16 18 C -0.09 -2.63 10.62 22.40 0.24 -2.39 16 19 C -0.12 -4.80 7.18 24.04 0.17 -4.63 16 20 C 0.55 21.63 7.93 69.97 0.55 22.19 16 21 O -0.51 -19.44 16.66 19.43 0.32 -19.12 16 22 O -0.36 -14.76 10.58 -56.76 -0.60 -15.36 16 23 C 0.03 0.88 10.57 113.37 1.20 2.07 16 24 O -0.15 -6.74 7.69 -4.88 -0.04 -6.78 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.07 1.52 6.74 -2.38 -0.02 1.51 16 28 H 0.05 2.27 6.93 -2.38 -0.02 2.25 16 29 H 0.02 0.65 7.03 -2.39 -0.02 0.64 16 30 H 0.01 0.48 5.91 -2.39 -0.01 0.47 16 31 H -0.02 -1.26 5.94 -2.39 -0.01 -1.28 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.03 1.18 6.26 -2.39 -0.01 1.16 16 36 H 0.20 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.12 3.00 8.14 -2.38 -0.02 2.98 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -73.07 334.03 4.66 -68.41 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.04 Total: 12.35 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.45 Total: -4.85 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -3.54 Total: -81.70 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.31 Total: -41.25 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.07 4.66 -68.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091781609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.347 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds