Wall clock time and date at job start Tue Mar 31 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30173 * 126.80431 * 2 1 4 4 O 1.20921 * 111.60498 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.56658 * 359.76573 * 4 3 2 6 6 C 1.50700 * 126.77608 * 180.28850 * 5 4 3 7 7 C 1.35449 * 106.44986 * 0.37638 * 5 4 3 8 8 C 1.50696 * 128.01083 * 179.91002 * 7 5 4 9 9 H 1.09003 * 109.47151 * 164.67865 * 8 7 5 10 10 C 1.52994 * 109.47391 * 284.68315 * 8 7 5 11 11 N 1.46906 * 109.46865 * 44.68312 * 8 7 5 12 12 C 1.46901 * 110.99793 * 155.00158 * 11 8 7 13 13 C 1.50701 * 109.46921 * 179.97438 * 12 11 8 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46835 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99788 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00327 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46999 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46979 * 120.00025 * 21 19 17 24 24 H 1.48496 * 109.47443 * 239.99733 * 21 19 17 25 25 H 1.08998 * 109.47393 * 270.02173 * 1 2 3 26 26 H 1.08994 * 109.47195 * 30.02445 * 1 2 3 27 27 H 1.09004 * 109.47364 * 150.01997 * 1 2 3 28 28 H 1.09008 * 109.47088 * 270.10987 * 6 5 4 29 29 H 1.08999 * 109.47164 * 30.10890 * 6 5 4 30 30 H 1.08999 * 109.47314 * 150.11121 * 6 5 4 31 31 H 1.09003 * 109.47340 * 59.99666 * 10 8 7 32 32 H 1.08995 * 109.47731 * 179.97438 * 10 8 7 33 33 H 1.08996 * 109.47268 * 300.00245 * 10 8 7 34 34 H 1.00899 * 110.99995 * 31.04556 * 11 8 7 35 35 H 1.09002 * 109.47401 * 59.99808 * 12 11 8 36 36 H 1.09001 * 109.46874 * 299.99821 * 12 11 8 37 37 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 38 38 H 1.09001 * 109.47487 * 300.00114 * 16 15 13 39 39 H 1.09002 * 109.47182 * 60.00342 * 16 15 13 40 40 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6024 -0.6069 0.0060 6 6 4.9021 -1.3696 0.0144 7 6 2.3539 -1.1321 0.0006 8 6 1.9590 -2.5864 0.0015 9 1 0.9058 -2.6768 0.2677 10 6 2.1854 -3.1773 -1.3915 11 7 2.7760 -3.3150 0.9812 12 6 2.0834 -4.5228 1.4498 13 6 2.9503 -5.2426 2.4506 14 8 4.0378 -4.7933 2.7448 15 7 2.5167 -6.3849 3.0194 16 6 3.3593 -7.0842 3.9926 17 6 2.6489 -8.3234 4.4733 18 1 1.6681 -8.5659 4.0917 19 6 3.2511 -9.1474 5.4003 20 7 4.4451 -8.8518 5.8654 21 14 2.3702 -10.6830 5.9966 22 1 1.0498 -10.7884 5.3253 23 1 3.1871 -11.8798 5.6719 24 1 2.1737 -10.6018 7.4663 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 5.2208 -1.5556 -1.0113 29 1 5.6632 -0.7849 0.5310 30 1 4.7623 -2.3201 0.5294 31 1 3.2386 -3.0869 -1.6577 32 1 1.9002 -4.2293 -1.3908 33 1 1.5793 -2.6367 -2.1184 34 1 3.0286 -2.7196 1.7556 35 1 1.8849 -5.1796 0.6028 36 1 1.1412 -4.2418 1.9204 37 1 1.6469 -6.7440 2.7843 38 1 4.3013 -7.3655 3.5219 39 1 3.5580 -6.4274 4.8394 40 1 4.8690 -9.4318 6.5173 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092331910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:03 Heat of formation + Delta-G solvation = 12.677453 kcal Electronic energy + Delta-G solvation = -21678.732847 eV Core-core repulsion = 18303.500940 eV Total energy + Delta-G solvation = -3375.231906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.04781 -39.02894 -37.33061 -34.59223 -34.15642 -33.18898 -32.33714 -30.56032 -28.88529 -27.83001 -27.70842 -25.85332 -23.64474 -22.27123 -21.14285 -19.90971 -19.73396 -17.77097 -17.63337 -16.83248 -16.11095 -15.59374 -15.47942 -14.87049 -14.51398 -14.25601 -13.82389 -13.66773 -13.64738 -13.41629 -13.16316 -12.95284 -12.68856 -12.56789 -12.44657 -12.22882 -12.03872 -11.91232 -11.63672 -11.18843 -11.10400 -10.96998 -10.91514 -10.34262 -10.02917 -9.40494 -9.27519 -9.07684 -8.76374 -8.51846 -7.90090 -6.19031 -4.26006 1.34627 2.00839 2.99700 3.21618 3.28792 3.31598 3.34294 3.71370 3.98403 4.24150 4.34345 4.43611 4.60415 4.85700 5.12241 5.13272 5.17216 5.20656 5.23043 5.33454 5.40093 5.42268 5.44244 5.44660 5.56019 5.64795 5.69019 5.78275 5.91832 6.08609 6.16519 6.81471 7.23582 7.30111 7.41369 7.49607 7.64671 7.94771 8.15160 8.60213 8.76048 9.07889 9.40865 10.91174 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033285 B = 0.002935 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.021170 B = 9537.670884 C = 9849.298960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.025 3.975 3 N -0.371 5.371 4 O 0.091 5.909 5 C 0.001 3.999 6 C -0.086 4.086 7 C -0.216 4.216 8 C 0.166 3.834 9 H 0.057 0.943 10 C -0.137 4.137 11 N -0.665 5.665 12 C 0.039 3.961 13 C 0.497 3.503 14 O -0.544 6.544 15 N -0.714 5.714 16 C 0.251 3.749 17 C -0.543 4.543 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.353 0.647 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.390 0.610 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 13.929 -14.206 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 N -0.078 5.078 4 O 0.028 5.972 5 C -0.063 4.063 6 C -0.144 4.144 7 C -0.220 4.220 8 C 0.056 3.944 9 H 0.075 0.925 10 C -0.195 4.195 11 N -0.298 5.298 12 C -0.094 4.094 13 C 0.281 3.719 14 O -0.422 6.422 15 N -0.363 5.363 16 C 0.130 3.870 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.140 0.860 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.173 0.827 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.222 0.778 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.106 15.154 -14.311 21.719 hybrid contribution -1.618 -1.411 0.876 2.319 sum -7.723 13.743 -13.435 20.713 Atomic orbital electron populations 1.20165 0.86141 1.03668 1.03387 1.23415 0.98787 0.88564 1.02703 1.73842 0.89348 1.23948 1.20709 1.84796 1.21528 1.22970 1.67915 1.24452 0.98657 0.83069 1.00088 1.20661 0.89175 1.00274 1.04249 1.20936 0.91946 0.96857 1.12265 1.19679 0.95307 0.85162 0.94264 0.92548 1.21797 1.02764 1.00620 0.94276 1.60295 1.42644 1.08066 1.18834 1.21917 0.95416 0.93477 0.98542 1.20305 0.87394 0.82018 0.82191 1.90660 1.21908 1.66650 1.62982 1.46446 1.21731 1.24104 1.44011 1.19095 0.90402 0.90990 0.86527 1.21263 1.03737 1.07810 1.25354 0.91870 1.24957 0.94914 0.98266 0.95907 1.69980 1.14201 1.38062 1.29991 0.86367 0.79571 0.82405 0.78595 1.19639 1.20778 1.20808 0.90197 0.90552 0.90067 0.89689 0.90265 0.86034 0.91594 0.91914 0.92624 0.82675 0.88338 0.92668 0.77781 0.95495 0.95614 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.23 36.00 0.37 -0.24 16 2 C 0.02 0.28 7.33 -82.10 -0.60 -0.32 16 3 N -0.37 -4.89 12.07 33.42 0.40 -4.48 16 4 O 0.09 1.15 11.20 17.18 0.19 1.34 16 5 C 0.00 0.01 7.35 -35.30 -0.26 -0.25 16 6 C -0.09 -0.81 10.27 36.01 0.37 -0.44 16 7 C -0.22 -2.37 4.94 -104.42 -0.52 -2.88 16 8 C 0.17 1.65 2.96 -68.87 -0.20 1.45 16 9 H 0.06 0.51 7.35 -51.93 -0.38 0.13 16 10 C -0.14 -1.23 9.40 37.15 0.35 -0.88 16 11 N -0.66 -8.13 4.11 -109.22 -0.45 -8.58 16 12 C 0.04 0.50 5.97 -4.97 -0.03 0.47 16 13 C 0.50 9.26 7.87 -10.98 -0.09 9.18 16 14 O -0.54 -12.37 16.20 5.56 0.09 -12.28 16 15 N -0.71 -14.32 5.55 -61.47 -0.34 -14.66 16 16 C 0.25 6.49 5.43 -5.19 -0.03 6.47 16 17 C -0.54 -14.47 9.28 -34.44 -0.32 -14.79 16 18 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.88 -25.79 13.29 55.43 0.74 -25.06 16 21 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 28 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.12 1.36 5.99 -51.93 -0.31 1.05 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.35 4.77 7.65 -39.29 -0.30 4.47 16 35 H 0.10 1.08 7.44 -51.93 -0.39 0.70 16 36 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 37 H 0.39 6.61 8.32 -40.82 -0.34 6.27 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 340.93 15.07 5.14 5.14 Total: -1.00 -32.22 340.93 -6.16 -38.38 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.85 Total: 5.27 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.05 Total: -0.61 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.35 Total: -52.78 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.28 Total: -10.93 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.22 -6.16 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092331910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.055 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds