Wall clock time and date at job start Tue Mar 31 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30181 * 126.80302 * 2 1 4 4 O 1.20916 * 111.60402 * 180.25518 * 3 2 1 5 5 C 1.34041 * 111.57207 * 359.74847 * 4 3 2 6 6 C 1.50694 * 126.78328 * 179.97438 * 5 4 3 7 7 C 1.35453 * 106.44121 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.00687 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.47294 * 14.99686 * 8 7 5 10 10 C 1.53002 * 109.47093 * 254.99977 * 8 7 5 11 11 N 1.46905 * 109.47206 * 134.99968 * 8 7 5 12 12 C 1.46901 * 110.99870 * 205.00135 * 11 8 7 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 8 14 14 O 1.21282 * 120.00396 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99767 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99719 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.46785 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00107 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99714 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00121 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00018 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47248 * 90.00231 * 21 19 17 23 23 H 1.48501 * 109.47269 * 210.00197 * 21 19 17 24 24 H 1.48506 * 109.46892 * 330.00100 * 21 19 17 25 25 H 1.09003 * 109.46814 * 270.16064 * 1 2 3 26 26 H 1.08997 * 109.46752 * 30.16088 * 1 2 3 27 27 H 1.08999 * 109.47224 * 150.16235 * 1 2 3 28 28 H 1.08999 * 109.47545 * 270.00064 * 6 5 4 29 29 H 1.09002 * 109.46539 * 30.00591 * 6 5 4 30 30 H 1.09000 * 109.47120 * 150.00074 * 6 5 4 31 31 H 1.08999 * 109.47105 * 60.00118 * 10 8 7 32 32 H 1.08996 * 109.46950 * 179.97438 * 10 8 7 33 33 H 1.09003 * 109.46813 * 300.00004 * 10 8 7 34 34 H 1.00901 * 110.99869 * 81.04847 * 11 8 7 35 35 H 1.09004 * 109.47031 * 299.99620 * 12 11 8 36 36 H 1.08995 * 109.47111 * 59.99900 * 12 11 8 37 37 H 0.96997 * 120.00713 * 359.97438 * 15 13 12 38 38 H 1.08999 * 109.47195 * 299.98994 * 16 15 13 39 39 H 1.08995 * 109.47470 * 59.99670 * 16 15 13 40 40 H 0.97000 * 119.99968 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4538 0.7254 -0.0050 5 6 3.6026 -0.6068 -0.0036 6 6 4.9022 -1.3696 -0.0091 7 6 2.3540 -1.1320 0.0025 8 6 1.9591 -2.5863 0.0059 9 1 2.8230 -3.1969 0.2686 10 6 1.4590 -2.9822 -1.3848 11 7 0.8900 -2.8012 0.9902 12 6 0.8786 -4.1931 1.4597 13 6 -0.2290 -4.3751 2.4652 14 8 -0.9387 -3.4374 2.7620 15 7 -0.4302 -5.5795 3.0355 16 6 -1.5067 -5.7562 4.0134 17 6 -1.5184 -7.1842 4.4949 18 1 -0.7966 -7.8896 4.1105 19 6 -2.4507 -7.5901 5.4261 20 7 -3.3300 -6.7312 5.8938 21 14 -2.4649 -9.3599 6.0235 22 1 -1.5864 -9.4876 7.2138 23 1 -3.8512 -9.7485 6.3874 24 1 -1.9684 -10.2507 4.9439 25 1 -0.3633 0.0029 1.0277 26 1 -0.3633 0.8885 -0.5163 27 1 -0.3633 -0.8914 -0.5113 28 1 5.2103 -1.5552 -1.0380 29 1 5.6686 -0.7850 0.5000 30 1 4.7677 -2.3202 0.5070 31 1 2.2522 -2.8228 -2.1152 32 1 1.1738 -4.0342 -1.3825 33 1 0.5950 -2.3717 -1.6476 34 1 -0.0080 -2.5399 0.6116 35 1 0.7140 -4.8605 0.6137 36 1 1.8355 -4.4271 1.9262 37 1 0.1375 -6.3294 2.7985 38 1 -1.3423 -5.0887 4.8593 39 1 -2.4636 -5.5226 3.5468 40 1 -3.9862 -7.0168 6.5486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092331914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:06 Heat of formation + Delta-G solvation = 11.426004 kcal Electronic energy + Delta-G solvation = -21670.551288 eV Core-core repulsion = 18295.265115 eV Total energy + Delta-G solvation = -3375.286173 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.94999 -39.03893 -37.37712 -34.35613 -34.08817 -33.54916 -32.34014 -30.54024 -28.75350 -27.78218 -27.70918 -25.69958 -23.81690 -22.31056 -21.03375 -20.28631 -19.66442 -17.71186 -17.45983 -16.75198 -15.96256 -15.76074 -15.23360 -14.89273 -14.65280 -14.13198 -14.03555 -13.77028 -13.59572 -13.35212 -13.21617 -12.90335 -12.80880 -12.67496 -12.51278 -12.33719 -11.99717 -11.85378 -11.67239 -11.49352 -10.99705 -10.89446 -10.85504 -10.33664 -9.83699 -9.41718 -9.26140 -9.09781 -8.75283 -8.44882 -7.89164 -6.18297 -4.25459 1.39057 2.18506 3.03220 3.22700 3.28747 3.30944 3.35255 3.70791 4.14458 4.30583 4.36383 4.49781 4.65049 4.72391 4.93081 5.01762 5.11312 5.16396 5.17750 5.25035 5.30742 5.39336 5.47675 5.55418 5.57446 5.61192 5.64729 5.73515 5.83389 5.85818 6.16576 6.82653 7.27141 7.31549 7.42250 7.50460 7.65141 7.95488 8.26379 8.60947 8.76656 9.09053 9.41339 10.91874 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033129 B = 0.002937 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.980608 B = 9531.134342 C = 9846.859828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.042 3.958 3 N -0.373 5.373 4 O 0.093 5.907 5 C -0.036 4.036 6 C -0.072 4.072 7 C -0.178 4.178 8 C 0.162 3.838 9 H 0.091 0.909 10 C -0.181 4.181 11 N -0.664 5.664 12 C 0.040 3.960 13 C 0.496 3.504 14 O -0.543 6.543 15 N -0.714 5.714 16 C 0.251 3.749 17 C -0.544 4.544 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.353 0.647 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.390 0.610 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.900 7.094 -15.728 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 N -0.080 5.080 4 O 0.029 5.971 5 C -0.100 4.100 6 C -0.129 4.129 7 C -0.182 4.182 8 C 0.052 3.948 9 H 0.109 0.891 10 C -0.240 4.240 11 N -0.297 5.297 12 C -0.093 4.093 13 C 0.280 3.720 14 O -0.421 6.421 15 N -0.363 5.363 16 C 0.130 3.870 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.174 0.826 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.222 0.778 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.345 9.323 -14.817 22.633 hybrid contribution -0.275 -2.551 -0.401 2.597 sum 14.070 6.772 -15.218 21.804 Atomic orbital electron populations 1.20213 0.85973 1.02829 1.04275 1.23369 0.98922 0.88145 1.01297 1.73813 0.89243 1.23980 1.20986 1.84781 1.21769 1.22326 1.68239 1.24127 0.97954 0.84025 1.03882 1.20315 0.90196 0.98680 1.03758 1.20774 0.91494 0.96966 1.09014 1.19692 0.95500 0.89278 0.90379 0.89089 1.22518 1.02201 1.01870 0.97440 1.60158 1.08411 1.21011 1.40139 1.21887 0.99795 0.89915 0.97676 1.20319 0.85282 0.83683 0.82731 1.90669 1.48097 1.40193 1.63121 1.46443 1.35894 1.10114 1.43864 1.19090 0.84698 0.96719 0.86492 1.21224 1.16942 0.94863 1.25195 0.91915 1.24959 0.95034 0.98138 0.95912 1.69976 1.17911 1.34617 1.29735 0.86415 0.77449 0.83929 0.79108 1.20447 1.21005 1.19758 0.89099 0.90998 0.90512 0.89646 0.89882 0.89126 0.91749 0.91721 0.91994 0.82586 0.92607 0.88483 0.77796 0.95536 0.95600 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.46 36.01 0.34 -0.51 16 2 C 0.04 0.54 7.28 -82.10 -0.60 -0.05 16 3 N -0.37 -5.29 12.07 33.42 0.40 -4.89 16 4 O 0.09 1.17 11.20 17.18 0.19 1.36 16 5 C -0.04 -0.37 7.49 -35.31 -0.26 -0.63 16 6 C -0.07 -0.42 10.26 36.00 0.37 -0.05 16 7 C -0.18 -2.03 5.23 -104.42 -0.55 -2.58 16 8 C 0.16 1.60 2.94 -68.86 -0.20 1.40 16 9 H 0.09 0.76 6.80 -51.93 -0.35 0.40 16 10 C -0.18 -1.48 9.14 37.16 0.34 -1.14 16 11 N -0.66 -8.58 5.50 -109.21 -0.60 -9.18 16 12 C 0.04 0.51 5.97 -4.98 -0.03 0.49 16 13 C 0.50 9.46 7.87 -10.99 -0.09 9.38 16 14 O -0.54 -12.74 16.20 5.56 0.09 -12.65 16 15 N -0.71 -14.49 5.55 -61.47 -0.34 -14.83 16 16 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 17 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 18 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 21 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.76 5.92 -51.93 -0.31 0.45 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.45 7.28 -51.93 -0.38 0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.49 7.45 -51.93 -0.39 0.10 16 33 H 0.06 0.53 6.99 -51.93 -0.36 0.17 16 34 H 0.35 4.73 6.36 -39.29 -0.25 4.48 16 35 H 0.06 0.59 7.44 -51.93 -0.39 0.21 16 36 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 37 H 0.39 6.64 8.32 -40.82 -0.34 6.31 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -33.80 337.98 -6.25 -40.05 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.68 Total: 5.08 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.12 Total: -0.42 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.20 Total: -54.11 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.28 Total: -11.29 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.80 -6.25 -40.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092331914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.472 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds