Wall clock time and date at job start Tue Mar 31 2020 05:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45195 * 109.46895 * 2 1 4 4 C 1.34903 * 117.00255 * 180.02562 * 3 2 1 5 5 O 1.21624 * 119.99624 * 359.97438 * 4 3 2 6 6 C 1.46466 * 120.00424 * 180.02562 * 4 3 2 7 7 C 1.36639 * 125.99849 * 179.97438 * 6 4 3 8 8 C 1.40301 * 106.70541 * 180.02562 * 7 6 4 9 9 C 1.35172 * 107.12629 * 359.97438 * 8 7 6 10 10 C 1.50699 * 125.60912 * 180.02562 * 9 8 7 11 11 N 1.46904 * 109.47221 * 90.00212 * 10 9 8 12 12 C 1.46896 * 110.99663 * 293.95397 * 11 10 9 13 13 C 1.46894 * 110.99915 * 170.00202 * 11 10 9 14 14 H 1.09002 * 109.47104 * 309.99793 * 13 11 10 15 15 C 1.52997 * 109.47515 * 70.00061 * 13 11 10 16 16 C 1.50708 * 109.46991 * 190.00244 * 13 11 10 17 17 H 1.08000 * 119.99723 * 359.97438 * 16 13 11 18 18 C 1.37873 * 119.99930 * 179.97438 * 16 13 11 19 19 N 1.31509 * 120.00195 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99968 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46809 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46948 * 120.00245 * 20 18 16 23 23 H 1.48497 * 109.47378 * 240.00531 * 20 18 16 24 24 O 1.33912 * 108.77970 * 0.26727 * 9 8 7 25 25 H 1.09003 * 109.46725 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46912 * 299.99575 * 1 2 3 27 27 H 1.08996 * 109.47438 * 59.99734 * 1 2 3 28 28 H 1.09000 * 109.46723 * 240.00016 * 2 1 3 29 29 H 1.08996 * 109.47438 * 120.00266 * 2 1 3 30 30 H 1.08001 * 126.64675 * 0.02562 * 7 6 4 31 31 H 1.08002 * 126.43623 * 180.02562 * 8 7 6 32 32 H 1.08999 * 109.47292 * 330.00254 * 10 9 8 33 33 H 1.08998 * 109.46979 * 210.00189 * 10 9 8 34 34 H 1.08998 * 109.47503 * 296.04235 * 12 11 10 35 35 H 1.09007 * 109.47634 * 56.04710 * 12 11 10 36 36 H 1.09003 * 109.46925 * 176.04443 * 12 11 10 37 37 H 1.09002 * 109.47153 * 59.99762 * 15 13 11 38 38 H 1.09001 * 109.46832 * 299.99953 * 15 13 11 39 39 H 1.09004 * 109.47261 * 179.97438 * 15 13 11 40 40 H 0.97006 * 120.00358 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3514 1.5458 -0.0005 5 8 4.0923 0.5813 -0.0005 6 6 3.9112 2.8993 0.0000 7 6 5.2397 3.2189 0.0000 8 6 5.3174 4.6197 0.0012 9 6 4.0497 5.0888 0.0013 10 6 3.6519 6.5423 0.0018 11 7 3.5228 7.0152 -1.3830 12 6 4.8239 7.0092 -2.0648 13 6 2.9107 8.3498 -1.4286 14 1 2.0021 8.3536 -0.8265 15 6 3.8947 9.3815 -0.8734 16 6 2.5697 8.6976 -2.8548 17 1 2.7864 7.9973 -3.6480 18 6 1.9810 9.9096 -3.1470 19 7 1.7176 10.7625 -2.1812 20 14 1.5590 10.3410 -4.9148 21 1 1.9542 9.2204 -5.8056 22 1 0.0970 10.5739 -5.0320 23 1 2.2897 11.5711 -5.3122 24 8 3.2054 4.0493 0.0061 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 6.0691 2.5272 -0.0007 31 1 6.2205 5.2120 0.0012 32 1 4.4144 7.1275 0.5159 33 1 2.6976 6.6576 0.5156 34 1 5.4932 7.7176 -1.5766 35 1 5.2551 6.0092 -2.0161 36 1 4.6890 7.2963 -3.1076 37 1 4.8033 9.3777 -1.4755 38 1 4.1413 9.1299 0.1581 39 1 3.4406 10.3719 -0.9077 40 1 1.3038 11.6154 -2.3868 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:05 Heat of formation + Delta-G solvation = -61.843502 kcal Electronic energy + Delta-G solvation = -21859.011278 eV Core-core repulsion = 18448.255149 eV Total energy + Delta-G solvation = -3410.756129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.64977 -40.27345 -37.38686 -36.78317 -33.31642 -32.78813 -32.01047 -30.78248 -28.52103 -27.17196 -25.29935 -24.73897 -23.31436 -22.19131 -21.50469 -20.39643 -19.38526 -18.42280 -17.07152 -16.92729 -16.32927 -16.05251 -15.34162 -14.88739 -14.37658 -14.12702 -13.92698 -13.83333 -13.33315 -13.27011 -12.91539 -12.86266 -12.78857 -12.18763 -12.16965 -11.83332 -11.50758 -11.21865 -11.10819 -10.95487 -10.86280 -10.75803 -10.74000 -10.52052 -10.12904 -9.97194 -9.93578 -8.99032 -8.54143 -8.43801 -7.34177 -6.06147 -4.09879 0.86181 2.23417 2.31997 2.88183 3.00046 3.28138 3.36361 3.41275 4.37858 4.55217 4.70960 4.74887 4.83882 4.90372 5.02877 5.08466 5.26723 5.40307 5.51645 5.56109 5.59631 5.74166 5.75776 5.89056 5.97826 6.08715 6.17925 6.25845 6.38490 6.56979 6.71196 6.80059 6.97293 6.99475 7.31547 7.58183 7.61426 7.75996 8.00009 8.25761 8.46091 8.95803 9.55436 11.01033 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.003690 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.941797 B = 7585.957533 C = 8390.612838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.346 6.346 4 C 0.559 3.441 5 O -0.498 6.498 6 C -0.088 4.088 7 C -0.096 4.096 8 C -0.235 4.235 9 C 0.079 3.921 10 C 0.116 3.884 11 N -0.529 5.529 12 C 0.026 3.974 13 C 0.211 3.789 14 H 0.042 0.958 15 C -0.175 4.175 16 C -0.499 4.499 17 H 0.064 0.936 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 O -0.140 6.140 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.023 0.977 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.007 0.993 39 H 0.091 0.909 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 -15.404 6.276 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.262 6.262 4 C 0.405 3.595 5 O -0.389 6.389 6 C -0.138 4.138 7 C -0.115 4.115 8 C -0.255 4.255 9 C 0.025 3.975 10 C -0.012 4.012 11 N -0.254 5.254 12 C -0.122 4.122 13 C 0.106 3.894 14 H 0.060 0.940 15 C -0.234 4.234 16 C -0.537 4.537 17 H 0.082 0.918 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.212 1.212 24 O -0.034 6.034 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.178 0.822 31 H 0.175 0.825 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.026 0.974 39 H 0.109 0.891 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.620 -15.862 6.045 17.176 hybrid contribution 0.524 0.727 -0.516 1.034 sum 3.143 -15.135 5.529 16.417 Atomic orbital electron populations 1.21820 0.92321 1.02953 1.03998 1.23100 0.95661 0.79637 1.02706 1.86706 1.23059 1.32600 1.83846 1.19160 0.80927 0.86544 0.72848 1.90914 1.60688 1.39872 1.47406 1.20531 0.90378 0.83925 1.18964 1.21893 0.94803 0.96089 0.98754 1.21597 0.97966 0.93947 1.11957 1.23299 0.87976 0.89827 0.96435 1.20726 1.02494 0.83715 0.94282 1.62392 1.22596 1.30274 1.10113 1.22373 0.90139 0.98946 1.00734 1.19389 0.92391 0.79971 0.97644 0.93975 1.22443 0.99939 1.05510 0.95496 1.21107 1.39207 1.01250 0.92160 0.91795 1.24914 0.95676 0.96256 0.97404 1.69882 1.43282 1.08836 1.31393 0.86443 0.78052 0.78223 0.84726 1.19710 1.21018 1.21153 1.84151 1.36673 1.13121 1.69418 0.90129 0.91297 0.91136 0.90962 0.91043 0.82189 0.82453 0.91407 0.89005 0.95809 0.93415 0.90569 0.94687 0.97366 0.89058 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.63 6.20 37.16 0.23 0.86 16 3 O -0.35 -4.82 10.23 -42.49 -0.43 -5.26 16 4 C 0.56 8.39 7.93 34.04 0.27 8.66 16 5 O -0.50 -7.84 16.66 -19.36 -0.32 -8.16 16 6 C -0.09 -1.36 7.18 -36.85 -0.26 -1.63 16 7 C -0.10 -1.30 10.62 -39.38 -0.42 -1.72 16 8 C -0.24 -3.24 9.26 -39.90 -0.37 -3.61 16 9 C 0.08 1.27 6.22 -35.40 -0.22 1.05 16 10 C 0.12 1.98 5.06 -4.97 -0.03 1.95 16 11 N -0.53 -10.89 4.69 -237.73 -1.12 -12.01 16 12 C 0.03 0.49 8.58 60.06 0.52 1.01 16 13 C 0.21 5.06 2.31 -68.87 -0.16 4.90 16 14 H 0.04 1.10 7.93 -51.93 -0.41 0.69 16 15 C -0.17 -3.95 8.22 37.16 0.31 -3.65 16 16 C -0.50 -13.25 7.97 -34.44 -0.27 -13.53 16 17 H 0.06 1.73 7.10 -52.49 -0.37 1.35 16 18 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 19 N -0.89 -24.74 11.32 55.43 0.63 -24.11 16 20 Si 0.90 20.98 29.54 -169.99 -5.02 15.95 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 O -0.14 -2.39 10.67 4.75 0.05 -2.34 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.07 1.06 7.06 -51.93 -0.37 0.69 16 33 H 0.09 1.56 7.93 -51.93 -0.41 1.15 16 34 H 0.02 0.42 6.21 -51.93 -0.32 0.10 16 35 H 0.05 0.79 6.08 -51.93 -0.32 0.47 16 36 H 0.08 1.54 6.86 -51.93 -0.36 1.18 16 37 H 0.03 0.76 6.33 -51.93 -0.33 0.44 16 38 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 39 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 40 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -29.38 333.18 -6.97 -36.35 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.65 Total: -0.42 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.12 Total: -5.03 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.49 Total: -36.12 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.71 Total: -15.76 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.38 -6.97 -36.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.495 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds