Wall clock time and date at job start Tue Mar 31 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00091 * 2 1 4 4 O 1.20830 * 119.99716 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00366 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47192 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00211 * 264.07972 * 6 5 3 8 8 H 1.07995 * 120.00211 * 196.60511 * 7 6 5 9 9 C 1.38954 * 119.99466 * 16.61099 * 7 6 5 10 10 N 1.31412 * 120.00287 * 20.78261 * 9 7 6 11 11 Si 1.86797 * 119.99739 * 200.78804 * 9 7 6 12 12 H 1.48497 * 109.47494 * 89.99915 * 11 9 7 13 13 H 1.48499 * 109.47239 * 209.99984 * 11 9 7 14 14 H 1.48506 * 109.47338 * 329.99951 * 11 9 7 15 15 C 1.34782 * 120.00127 * 84.08719 * 6 5 3 16 16 O 1.21290 * 119.99702 * 359.97438 * 15 6 5 17 17 C 1.50700 * 120.00015 * 179.97438 * 15 6 5 18 18 C 1.50699 * 109.47147 * 179.97438 * 17 15 6 19 19 C 1.29442 * 117.95847 * 94.73242 * 18 17 15 20 20 C 1.50066 * 124.07638 * 180.75011 * 19 18 17 21 21 C 1.53028 * 110.14749 * 342.87199 * 20 19 18 22 22 C 1.53402 * 108.43554 * 49.43578 * 21 20 19 23 23 C 1.50063 * 117.96590 * 275.00533 * 18 17 15 24 24 H 1.09008 * 109.46796 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47766 * 300.00237 * 1 2 3 26 26 H 1.09007 * 109.47056 * 60.00621 * 1 2 3 27 27 H 1.09002 * 109.47079 * 59.99221 * 5 3 2 28 28 H 1.09002 * 109.46980 * 299.99983 * 5 3 2 29 29 H 0.97003 * 119.99726 * 179.97438 * 10 9 7 30 30 H 1.08999 * 109.46819 * 59.99681 * 17 15 6 31 31 H 1.09000 * 109.46893 * 300.00066 * 17 15 6 32 32 H 1.07998 * 117.96556 * 0.73139 * 19 18 17 33 33 H 1.08999 * 109.36030 * 222.66739 * 20 19 18 34 34 H 1.08997 * 109.36105 * 103.08071 * 20 19 18 35 35 H 1.08991 * 109.64346 * 289.75346 * 21 20 19 36 36 H 1.08994 * 109.64312 * 169.11743 * 21 20 19 37 37 H 1.08994 * 109.64000 * 172.87912 * 22 21 20 38 38 H 1.08999 * 109.64126 * 52.24728 * 22 21 20 39 39 H 1.09004 * 109.35670 * 282.79179 * 23 18 17 40 40 H 1.09001 * 109.36206 * 42.50987 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.2939 3.3017 -1.1814 8 1 4.8473 4.2290 -1.1736 9 6 3.8981 2.7388 -2.3886 10 7 2.9097 1.8733 -2.4174 11 14 4.7712 3.2125 -3.9706 12 1 5.9133 2.2917 -4.2006 13 1 3.8213 3.1166 -5.1080 14 1 5.2731 4.6058 -3.8610 15 6 4.0569 3.3609 1.1605 16 8 3.7803 2.8108 2.2054 17 6 4.4847 4.8059 1.1597 18 6 4.4854 5.3303 2.5725 19 6 5.6007 5.3041 3.2290 20 6 5.7539 5.7752 4.6455 21 6 4.5653 6.6547 5.0399 22 6 3.2724 5.9223 4.6591 23 6 3.1918 5.8445 3.1330 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.9564 0.7805 -0.8891 28 1 3.9557 0.7810 0.8908 29 1 2.6333 1.4807 -3.2602 30 1 3.7901 5.3901 0.5560 31 1 5.4876 4.8876 0.7409 32 1 6.4755 4.9191 2.7261 33 1 6.6751 6.3505 4.7374 34 1 5.8012 4.9126 5.3101 35 1 4.6192 7.6040 4.5071 36 1 4.5823 6.8330 6.1150 37 1 2.4132 6.4716 5.0439 38 1 3.2848 4.9157 5.0771 39 1 2.9932 6.8378 2.7306 40 1 2.3824 5.1716 2.8498 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120504921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:16 Heat of formation + Delta-G solvation = -110.895093 kcal Electronic energy + Delta-G solvation = -22972.602260 eV Core-core repulsion = 19559.719094 eV Total energy + Delta-G solvation = -3412.883165 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.50765 -38.73599 -37.60259 -35.37445 -34.56092 -32.32337 -31.55639 -30.38037 -28.81792 -26.94591 -25.84359 -24.44910 -22.86235 -21.49424 -20.23962 -19.16408 -17.32898 -16.93081 -16.54804 -16.17214 -15.44360 -15.24652 -15.08894 -14.38854 -14.27627 -14.09163 -13.76908 -13.43729 -12.95302 -12.75863 -12.43298 -12.34233 -12.08695 -11.91008 -11.70057 -11.54218 -11.30978 -11.27998 -10.86453 -10.79202 -10.56248 -10.52764 -10.42609 -10.09424 -9.80204 -9.78909 -9.55898 -9.00565 -8.69662 -8.14347 -7.94718 -6.50543 -3.99121 2.75536 3.07743 3.18086 3.20539 3.52705 3.71778 4.03762 4.09699 4.75164 4.98831 5.04532 5.06920 5.16815 5.58392 5.66332 5.71034 5.73771 5.79187 5.86281 5.87927 5.96143 6.02305 6.12151 6.14158 6.23464 6.25926 6.33102 6.39130 6.46960 6.50114 6.56489 6.62280 6.69790 7.12329 7.35274 7.48070 7.56307 7.61553 8.24130 8.98304 9.13211 9.39145 9.80420 10.57070 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.005977 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.501781 B = 4683.615911 C = 5950.222144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.485 3.515 4 O -0.500 6.500 5 C 0.157 3.843 6 N -0.434 5.434 7 C -0.335 4.335 8 H 0.104 0.896 9 C 0.036 3.964 10 N -0.870 5.870 11 Si 0.926 3.074 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.270 1.270 15 C 0.476 3.524 16 O -0.595 6.595 17 C -0.092 4.092 18 C -0.078 4.078 19 C -0.172 4.172 20 C -0.081 4.081 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.080 4.080 24 H 0.085 0.915 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.122 0.878 28 H 0.080 0.920 29 H 0.272 0.728 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 3.003 6.046 7.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.326 3.674 4 O -0.385 6.385 5 C 0.032 3.968 6 N -0.153 5.153 7 C -0.462 4.462 8 H 0.122 0.878 9 C -0.168 4.168 10 N -0.508 5.508 11 Si 0.752 3.248 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.194 1.194 15 C 0.266 3.734 16 O -0.480 6.480 17 C -0.132 4.132 18 C -0.078 4.078 19 C -0.190 4.190 20 C -0.118 4.118 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.117 4.117 24 H 0.104 0.896 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.455 2.926 6.385 7.172 hybrid contribution -0.019 0.162 -1.293 1.304 sum 1.435 3.087 5.091 6.125 Atomic orbital electron populations 1.22925 0.78789 1.01766 1.01602 1.86458 1.21633 1.35584 1.85717 1.24000 0.92323 0.80524 0.70522 1.90505 1.66506 1.36386 1.45093 1.20457 0.87140 0.85827 1.03426 1.43436 1.57615 1.08032 1.06222 1.19655 1.34638 1.09605 0.82288 0.87800 1.25218 0.94882 0.97135 0.99611 1.69846 1.22923 1.30175 1.27876 0.85944 0.79011 0.79107 0.80699 1.20198 1.21045 1.19409 1.20098 0.81780 0.87943 0.83588 1.90539 1.55111 1.70363 1.31996 1.20613 1.02999 0.94833 0.94717 1.20460 0.94596 0.97509 0.95255 1.21686 0.97822 1.03423 0.96055 1.20328 0.97808 0.98932 0.94749 1.21592 0.95255 0.98644 1.00089 1.21565 0.96959 1.00796 0.96096 1.20336 0.96159 1.00416 0.94800 0.89638 0.93195 0.92638 0.85982 0.90182 0.91735 0.89179 0.89684 0.88396 0.91929 0.91458 0.92068 0.92354 0.92311 0.91578 0.91570 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.30 10.56 -39.25 -0.41 -8.71 16 3 C 0.49 12.24 6.13 36.00 0.22 12.46 16 4 O -0.50 -14.07 15.79 -18.75 -0.30 -14.37 16 5 C 0.16 3.83 5.14 -5.20 -0.03 3.80 16 6 N -0.43 -10.92 2.18 -116.10 -0.25 -11.18 16 7 C -0.33 -8.33 9.15 -14.93 -0.14 -8.47 16 8 H 0.10 2.42 6.55 -52.49 -0.34 2.07 16 9 C 0.04 0.89 4.90 -17.47 -0.09 0.81 16 10 N -0.87 -22.54 9.24 55.50 0.51 -22.03 16 11 Si 0.93 19.14 29.60 -169.99 -5.03 14.10 16 12 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 15 C 0.48 11.62 7.42 -10.98 -0.08 11.53 16 16 O -0.59 -15.71 15.71 5.55 0.09 -15.62 16 17 C -0.09 -1.86 4.15 -29.04 -0.12 -1.98 16 18 C -0.08 -1.41 4.33 -100.94 -0.44 -1.85 16 19 C -0.17 -2.83 9.37 -35.90 -0.34 -3.17 16 20 C -0.08 -1.10 6.12 -28.17 -0.17 -1.27 16 21 C -0.12 -1.48 6.01 -26.51 -0.16 -1.64 16 22 C -0.12 -1.68 6.01 -26.51 -0.16 -1.84 16 23 C -0.08 -1.35 5.80 -28.18 -0.16 -1.51 16 24 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 25 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.05 1.02 8.13 -51.92 -0.42 0.60 16 27 H 0.12 2.94 6.34 -51.93 -0.33 2.61 16 28 H 0.08 1.83 7.61 -51.93 -0.40 1.44 16 29 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.09 1.83 8.07 -51.93 -0.42 1.41 16 31 H 0.08 1.58 7.36 -51.93 -0.38 1.20 16 32 H 0.10 1.59 7.74 -52.49 -0.41 1.18 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 330.97 15.07 4.99 4.99 Total: -1.00 -30.95 330.97 -7.06 -38.01 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.06 Total: 6.09 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.59 Total: 8.72 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.26 Total: -33.20 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.62 Total: -38.71 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.95 -7.06 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120504921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.888 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds