Wall clock time and date at job start Tue Mar 31 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00091 * 2 1 4 4 O 1.20830 * 119.99716 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00366 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47192 * 179.97438 * 5 3 2 7 7 C 1.37097 * 120.00211 * 264.07972 * 6 5 3 8 8 H 1.07995 * 120.00211 * 196.60511 * 7 6 5 9 9 C 1.38954 * 119.99466 * 16.61099 * 7 6 5 10 10 N 1.31412 * 120.00287 * 20.78261 * 9 7 6 11 11 Si 1.86797 * 119.99739 * 200.78804 * 9 7 6 12 12 H 1.48497 * 109.47494 * 89.99915 * 11 9 7 13 13 H 1.48499 * 109.47239 * 209.99984 * 11 9 7 14 14 H 1.48506 * 109.47338 * 329.99951 * 11 9 7 15 15 C 1.34782 * 120.00127 * 84.08719 * 6 5 3 16 16 O 1.21290 * 119.99702 * 359.97438 * 15 6 5 17 17 C 1.50700 * 120.00015 * 179.97438 * 15 6 5 18 18 C 1.50699 * 109.47147 * 179.97438 * 17 15 6 19 19 C 1.29442 * 117.95847 * 94.73242 * 18 17 15 20 20 C 1.50066 * 124.07638 * 180.75011 * 19 18 17 21 21 C 1.53028 * 110.14749 * 342.87199 * 20 19 18 22 22 C 1.53402 * 108.43554 * 49.43578 * 21 20 19 23 23 C 1.50063 * 117.96590 * 275.00533 * 18 17 15 24 24 H 1.09008 * 109.46796 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47766 * 300.00237 * 1 2 3 26 26 H 1.09007 * 109.47056 * 60.00621 * 1 2 3 27 27 H 1.09002 * 109.47079 * 59.99221 * 5 3 2 28 28 H 1.09002 * 109.46980 * 299.99983 * 5 3 2 29 29 H 0.97003 * 119.99726 * 179.97438 * 10 9 7 30 30 H 1.08999 * 109.46819 * 59.99681 * 17 15 6 31 31 H 1.09000 * 109.46893 * 300.00066 * 17 15 6 32 32 H 1.07998 * 117.96556 * 0.73139 * 19 18 17 33 33 H 1.08999 * 109.36030 * 222.66739 * 20 19 18 34 34 H 1.08997 * 109.36105 * 103.08071 * 20 19 18 35 35 H 1.08991 * 109.64346 * 289.75346 * 21 20 19 36 36 H 1.08994 * 109.64312 * 169.11743 * 21 20 19 37 37 H 1.08994 * 109.64000 * 172.87912 * 22 21 20 38 38 H 1.08999 * 109.64126 * 52.24728 * 22 21 20 39 39 H 1.09004 * 109.35670 * 282.79179 * 23 18 17 40 40 H 1.09001 * 109.36206 * 42.50987 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 4.2939 3.3017 -1.1814 8 1 4.8473 4.2290 -1.1736 9 6 3.8981 2.7388 -2.3886 10 7 2.9097 1.8733 -2.4174 11 14 4.7712 3.2125 -3.9706 12 1 5.9133 2.2917 -4.2006 13 1 3.8213 3.1166 -5.1080 14 1 5.2731 4.6058 -3.8610 15 6 4.0569 3.3609 1.1605 16 8 3.7803 2.8108 2.2054 17 6 4.4847 4.8059 1.1597 18 6 4.4854 5.3303 2.5725 19 6 5.6007 5.3041 3.2290 20 6 5.7539 5.7752 4.6455 21 6 4.5653 6.6547 5.0399 22 6 3.2724 5.9223 4.6591 23 6 3.1918 5.8445 3.1330 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.9564 0.7805 -0.8891 28 1 3.9557 0.7810 0.8908 29 1 2.6333 1.4807 -3.2602 30 1 3.7901 5.3901 0.5560 31 1 5.4876 4.8876 0.7409 32 1 6.4755 4.9191 2.7261 33 1 6.6751 6.3505 4.7374 34 1 5.8012 4.9126 5.3101 35 1 4.6192 7.6040 4.5071 36 1 4.5823 6.8330 6.1150 37 1 2.4132 6.4716 5.0439 38 1 3.2848 4.9157 5.0771 39 1 2.9932 6.8378 2.7306 40 1 2.3824 5.1716 2.8498 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120504921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:15 Heat of formation + Delta-G solvation = -127.544930 kcal Electronic energy + Delta-G solvation = -22973.324251 eV Core-core repulsion = 19559.719094 eV Total energy + Delta-G solvation = -3413.605156 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39268 -40.42039 -39.07216 -37.26022 -36.51295 -33.73278 -33.46812 -31.58622 -30.58268 -28.45700 -27.55027 -26.25933 -24.08546 -22.81096 -21.98574 -21.04345 -18.99153 -18.48429 -18.41779 -17.97194 -17.29310 -16.97558 -16.55608 -16.09909 -15.95940 -15.68776 -15.13347 -14.66640 -14.53242 -14.38458 -14.19874 -13.94428 -13.43623 -13.38992 -13.11729 -13.04594 -12.94891 -12.87422 -12.55002 -12.46105 -12.38121 -12.07543 -11.63214 -11.60162 -11.52474 -11.27856 -11.00995 -10.95051 -10.54283 -9.89624 -9.55182 -8.39025 -5.94438 1.36549 1.43011 1.49406 1.60305 1.68885 1.79670 2.24896 2.33517 2.95116 3.13146 3.79937 3.86360 4.08747 4.21241 4.31767 4.33143 4.36470 4.38671 4.44233 4.53905 4.55955 4.65760 4.68688 4.73355 4.74696 4.83603 4.85615 5.03524 5.06796 5.13742 5.22706 5.36225 5.43843 5.50448 5.60937 5.70838 5.83689 6.22632 6.32413 7.06417 7.19307 7.48730 7.89832 8.68585 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.005977 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.501781 B = 4683.615911 C = 5950.222144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.487 3.513 4 O -0.538 6.538 5 C 0.154 3.846 6 N -0.444 5.444 7 C -0.354 4.354 8 H 0.116 0.884 9 C -0.005 4.005 10 N -0.898 5.898 11 Si 0.997 3.003 12 H -0.268 1.268 13 H -0.291 1.291 14 H -0.259 1.259 15 C 0.463 3.537 16 O -0.623 6.623 17 C -0.084 4.084 18 C -0.107 4.107 19 C -0.159 4.159 20 C -0.084 4.084 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.079 4.079 24 H 0.135 0.865 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.121 0.879 28 H 0.087 0.913 29 H 0.272 0.728 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 3.971 6.388 8.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.330 3.670 4 O -0.426 6.426 5 C 0.028 3.972 6 N -0.163 5.163 7 C -0.480 4.480 8 H 0.134 0.866 9 C -0.207 4.207 10 N -0.537 5.537 11 Si 0.821 3.179 12 H -0.193 1.193 13 H -0.217 1.217 14 H -0.183 1.183 15 C 0.254 3.746 16 O -0.511 6.511 17 C -0.123 4.123 18 C -0.108 4.108 19 C -0.177 4.177 20 C -0.121 4.121 21 C -0.150 4.150 22 C -0.152 4.152 23 C -0.116 4.116 24 H 0.153 0.847 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.139 0.861 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.594 3.878 6.733 8.191 hybrid contribution -0.435 -0.236 -1.376 1.463 sum 2.159 3.642 5.357 6.828 Atomic orbital electron populations 1.23297 0.76190 1.04907 1.01151 1.86423 1.24146 1.33824 1.85032 1.24122 0.92669 0.80759 0.69485 1.90474 1.67358 1.37725 1.47057 1.20511 0.87048 0.86093 1.03545 1.43696 1.57540 1.08349 1.06742 1.20063 1.35099 1.10384 0.82485 0.86628 1.26127 0.95041 0.96959 1.02575 1.69957 1.24017 1.31223 1.28498 0.84859 0.77632 0.79345 0.76077 1.19327 1.21705 1.18295 1.20871 0.81244 0.89452 0.82997 1.90496 1.56341 1.71353 1.32865 1.20569 1.03255 0.91886 0.96595 1.20482 0.95899 0.99765 0.94633 1.22024 0.97047 1.01154 0.97448 1.20440 0.99651 0.99567 0.92397 1.21591 0.93203 0.98331 1.01835 1.21560 0.99298 1.00392 0.93967 1.20317 0.94294 1.00138 0.96862 0.84677 0.93191 0.93606 0.86094 0.89512 0.91851 0.89900 0.88247 0.88390 0.89196 0.91365 0.91050 0.89767 0.90354 0.93596 0.89999 0.94545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.56 113.37 1.20 2.53 16 2 O -0.38 -16.73 10.56 -51.38 -0.54 -17.27 16 3 C 0.49 25.18 6.13 71.24 0.44 25.62 16 4 O -0.54 -31.29 15.79 21.95 0.35 -30.94 16 5 C 0.15 7.70 5.14 85.63 0.44 8.14 16 6 N -0.44 -22.91 2.18 -639.60 -1.39 -24.30 16 7 C -0.35 -17.74 9.15 84.04 0.77 -16.97 16 8 H 0.12 5.36 6.55 -2.91 -0.02 5.34 16 9 C -0.01 -0.27 4.90 84.93 0.42 0.15 16 10 N -0.90 -47.11 9.24 21.66 0.20 -46.91 16 11 Si 1.00 38.87 29.60 68.60 2.03 40.90 16 12 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 13 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 15 C 0.46 23.22 7.42 87.66 0.65 23.87 16 16 O -0.62 -34.02 15.71 -3.06 -0.05 -34.07 16 17 C -0.08 -3.43 4.15 29.10 0.12 -3.31 16 18 C -0.11 -3.89 4.33 -15.10 -0.07 -3.96 16 19 C -0.16 -5.02 9.37 27.04 0.25 -4.77 16 20 C -0.08 -2.03 6.12 29.66 0.18 -1.85 16 21 C -0.11 -2.47 6.01 30.74 0.18 -2.28 16 22 C -0.11 -3.17 6.01 30.74 0.18 -2.98 16 23 C -0.08 -2.68 5.80 29.65 0.17 -2.51 16 24 H 0.14 3.33 8.14 -2.38 -0.02 3.31 16 25 H 0.05 1.73 8.13 -2.39 -0.02 1.72 16 26 H 0.05 1.68 8.13 -2.38 -0.02 1.66 16 27 H 0.12 5.99 6.34 -2.39 -0.02 5.98 16 28 H 0.09 4.11 7.61 -2.39 -0.02 4.09 16 29 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 30 H 0.08 3.46 8.07 -2.39 -0.02 3.44 16 31 H 0.10 3.68 7.36 -2.39 -0.02 3.67 16 32 H 0.10 3.05 7.74 -2.91 -0.02 3.03 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.46 8.12 -2.39 -0.02 1.44 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.43 8.12 -2.39 -0.02 1.42 16 39 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -68.13 330.97 6.56 -61.57 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 1.03 Total: 29.33 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 4.94 Total: 21.68 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -1.19 Total: -71.21 kcal Atomic # 8 Polarization: -82.03 SS G_CDS: -0.24 Total: -82.27 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -68.13 6.56 -61.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120504921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.972 kcal (2) G-P(sol) polarization free energy of solvation -68.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds