Wall clock time and date at job start Tue Mar 31 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36000 * 116.99403 * 2 1 4 4 C 1.38669 * 120.04905 * 0.02562 * 3 2 1 5 5 C 1.38229 * 120.09052 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.90774 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.47299 * 89.99690 * 6 5 4 8 8 C 1.46503 * 120.00147 * 269.99558 * 7 6 5 9 9 C 1.36941 * 120.00457 * 89.99580 * 7 6 5 10 10 H 1.08003 * 119.99480 * 22.37337 * 9 7 6 11 11 C 1.38802 * 120.00564 * 202.37588 * 9 7 6 12 12 N 1.31626 * 120.00077 * 11.32937 * 11 9 7 13 13 Si 1.86798 * 120.00339 * 191.32891 * 11 9 7 14 14 H 1.48501 * 109.47244 * 60.00056 * 13 11 9 15 15 H 1.48504 * 109.47200 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47026 * 299.99704 * 13 11 9 17 17 C 1.38224 * 120.17669 * 359.97438 * 5 4 3 18 18 C 1.38668 * 120.09481 * 0.02562 * 17 5 4 19 19 O 1.35995 * 120.04875 * 180.02562 * 18 17 5 20 20 C 1.42899 * 116.99840 * 0.02562 * 19 18 17 21 21 C 1.38977 * 119.90625 * 359.72230 * 18 17 5 22 22 O 1.36098 * 120.09086 * 180.30324 * 21 18 17 23 23 C 1.42905 * 116.99326 * 270.25147 * 22 21 18 24 24 H 1.09003 * 109.46793 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47767 * 59.99714 * 1 2 3 26 26 H 1.09005 * 109.47041 * 299.98848 * 1 2 3 27 27 H 1.07997 * 119.95230 * 359.96784 * 4 3 2 28 28 H 1.09005 * 109.47043 * 209.99415 * 6 5 4 29 29 H 1.08999 * 109.47342 * 329.98926 * 6 5 4 30 30 H 1.09005 * 109.47155 * 94.20268 * 8 7 6 31 31 H 1.08994 * 109.47443 * 214.20429 * 8 7 6 32 32 H 1.09002 * 109.46634 * 334.20940 * 8 7 6 33 33 H 0.96994 * 120.00216 * 179.97438 * 12 11 9 34 34 H 1.08009 * 119.95290 * 180.02562 * 17 5 4 35 35 H 1.09002 * 109.47098 * 299.99660 * 20 19 18 36 36 H 1.08998 * 109.47724 * 59.99463 * 20 19 18 37 37 H 1.09004 * 109.47124 * 180.02562 * 20 19 18 38 38 H 1.08994 * 109.47091 * 59.99694 * 23 22 21 39 39 H 1.09004 * 109.46661 * 179.97438 * 23 22 21 40 40 H 1.09003 * 109.47075 * 299.99569 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2919 2.3754 0.0005 5 6 1.9184 3.6075 0.0000 6 6 1.0946 4.8694 0.0000 7 7 0.8281 5.2786 1.3812 8 6 -0.3676 4.7897 2.0723 9 6 1.6965 6.1181 2.0264 10 1 2.3539 6.7574 1.4557 11 6 1.7321 6.1475 3.4136 12 7 1.1028 5.2230 4.1078 13 14 2.6729 7.4989 4.2955 14 1 2.1068 8.8203 3.9232 15 1 2.5569 7.3060 5.7634 16 1 4.1036 7.4444 3.9012 17 6 3.2985 3.6853 -0.0005 18 6 4.0602 2.5265 -0.0011 19 8 5.4179 2.6041 -0.0011 20 6 5.9930 3.9123 0.0001 21 6 3.4341 1.2858 0.0048 22 8 4.1781 0.1461 0.0105 23 6 4.5376 -0.4001 -1.2601 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8898 26 1 -0.3633 0.5137 0.8901 27 1 0.2134 2.3188 0.0004 28 1 1.6411 5.6600 -0.5142 29 1 0.1507 4.6870 -0.5136 30 1 -0.1162 3.8981 2.6468 31 1 -0.7400 5.5623 2.7449 32 1 -1.1362 4.5447 1.3392 33 1 1.1279 5.2433 5.0772 34 1 3.7843 4.6499 -0.0005 35 1 5.6688 4.4525 -0.8895 36 1 5.6688 4.4510 0.8905 37 1 7.0800 3.8314 -0.0005 38 1 5.1249 0.3303 -1.8166 39 1 5.1282 -1.3044 -1.1128 40 1 3.6344 -0.6428 -1.8201 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122797553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:01 Heat of formation + Delta-G solvation = -54.516333 kcal Electronic energy + Delta-G solvation = -23025.429591 eV Core-core repulsion = 19614.991192 eV Total energy + Delta-G solvation = -3410.438399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.32865 -38.62058 -37.39146 -36.71816 -34.84816 -31.63106 -29.86336 -29.17368 -27.53739 -27.01034 -26.85757 -25.89853 -24.74202 -21.89147 -21.52328 -20.50815 -18.02896 -16.95558 -16.86282 -16.54017 -16.04421 -15.86316 -15.20631 -14.89630 -14.69500 -14.36289 -14.25251 -13.93721 -13.64843 -13.35346 -12.77467 -12.66794 -12.07670 -11.82839 -11.76801 -11.45959 -11.24527 -11.21393 -11.12973 -10.95059 -10.71159 -10.60177 -10.36467 -10.11570 -10.06504 -9.82525 -9.59439 -8.61379 -7.70685 -7.65989 -6.85071 -5.79480 -3.23645 1.72047 1.90174 3.17564 3.34371 3.39760 3.40985 3.93976 3.97356 4.32948 4.47154 5.20459 5.27794 5.36014 5.38021 5.45299 5.45795 5.53800 5.55885 5.60028 5.62010 5.66577 5.67294 5.72352 5.77774 5.86966 6.07264 6.20102 6.51436 6.61538 6.66665 6.71263 6.88798 7.23473 7.32365 7.43869 7.63327 7.67129 7.74614 8.12402 8.31767 9.15369 9.77188 10.26055 11.25041 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.006256 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.314948 B = 4474.808137 C = 5505.796383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.142 3.858 4 C -0.224 4.224 5 C -0.007 4.007 6 C 0.178 3.822 7 N -0.587 5.587 8 C 0.163 3.837 9 C -0.256 4.256 10 H 0.070 0.930 11 C 0.005 3.995 12 N -0.901 5.901 13 Si 0.906 3.094 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.283 1.283 17 C -0.211 4.211 18 C 0.144 3.856 19 O -0.310 6.310 20 C 0.027 3.973 21 C 0.006 3.994 22 O -0.313 6.313 23 C 0.036 3.964 24 H 0.095 0.905 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.126 0.874 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.048 0.952 32 H -0.003 1.003 33 H 0.255 0.745 34 H 0.130 0.870 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.039 0.961 39 H 0.084 0.916 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 -6.750 -11.271 13.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.096 3.904 4 C -0.244 4.244 5 C -0.011 4.011 6 C 0.051 3.949 7 N -0.307 5.307 8 C 0.018 3.982 9 C -0.385 4.385 10 H 0.087 0.913 11 C -0.194 4.194 12 N -0.545 5.545 13 Si 0.736 3.264 14 H -0.209 1.209 15 H -0.215 1.215 16 H -0.209 1.209 17 C -0.231 4.231 18 C 0.097 3.903 19 O -0.224 6.224 20 C -0.069 4.069 21 C -0.040 4.040 22 O -0.229 6.229 23 C -0.059 4.059 24 H 0.113 0.887 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.144 0.856 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.016 0.984 33 H 0.065 0.935 34 H 0.148 0.852 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.465 -7.167 -10.881 13.261 hybrid contribution 0.296 1.019 0.596 1.217 sum 2.761 -6.148 -10.285 12.297 Atomic orbital electron populations 1.23035 0.78728 1.03318 1.01664 1.86070 1.20993 1.26566 1.88735 1.18902 0.90488 0.84654 0.96308 1.20852 0.99608 0.91186 1.12738 1.20825 0.93703 0.96700 0.89896 1.20043 0.95661 0.90626 0.88581 1.44147 1.23487 1.52795 1.10258 1.20850 0.85113 0.99165 0.93042 1.19167 1.17216 1.13113 0.89030 0.91264 1.25092 0.99475 0.97948 0.96902 1.70054 1.45663 1.32879 1.05899 0.86319 0.79756 0.81615 0.78746 1.20909 1.21520 1.20893 1.20901 0.94356 0.96610 1.11227 1.18960 0.82477 0.92830 0.95985 1.86057 1.17228 1.30439 1.88637 1.23061 0.98505 0.83352 1.01939 1.16781 0.86207 0.84200 1.16768 1.86177 1.70278 1.38395 1.28080 1.22898 0.99032 0.98049 0.85943 0.88663 0.92846 0.92312 0.85622 0.92550 0.93128 0.95241 0.93318 0.98407 0.93491 0.85186 0.92803 0.92005 0.88682 0.94196 0.89757 0.94223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.31 -5.35 10.28 -34.32 -0.35 -5.70 16 3 C 0.14 2.72 6.70 -39.15 -0.26 2.46 16 4 C -0.22 -4.23 8.69 -39.43 -0.34 -4.57 16 5 C -0.01 -0.13 5.46 -104.63 -0.57 -0.70 16 6 C 0.18 3.59 5.83 -5.20 -0.03 3.56 16 7 N -0.59 -14.41 2.91 -182.50 -0.53 -14.94 16 8 C 0.16 3.94 9.01 59.85 0.54 4.48 16 9 C -0.26 -6.83 9.67 -15.06 -0.15 -6.97 16 10 H 0.07 1.78 7.84 -52.48 -0.41 1.37 16 11 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 12 N -0.90 -26.16 10.59 55.49 0.59 -25.57 16 13 Si 0.91 21.57 29.57 -169.99 -5.03 16.54 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C -0.21 -4.15 8.69 -39.43 -0.34 -4.49 16 18 C 0.14 2.81 6.70 -39.15 -0.26 2.55 16 19 O -0.31 -5.57 10.28 -34.31 -0.35 -5.92 16 20 C 0.03 0.37 9.81 101.05 0.99 1.36 16 21 C 0.01 0.12 5.75 -39.03 -0.22 -0.11 16 22 O -0.31 -6.00 9.99 -45.31 -0.45 -6.45 16 23 C 0.04 0.51 11.13 101.05 1.13 1.64 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.59 7.66 -51.94 -0.40 0.19 16 26 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 27 H 0.13 2.14 6.29 -52.49 -0.33 1.81 16 28 H 0.06 1.07 7.97 -51.93 -0.41 0.66 16 29 H 0.05 0.91 7.81 -51.93 -0.41 0.50 16 30 H 0.03 0.78 7.42 -51.93 -0.39 0.40 16 31 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 32 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 33 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.13 2.43 6.29 -52.48 -0.33 2.10 16 35 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 36 H 0.06 0.92 7.66 -51.93 -0.40 0.52 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -32.44 335.63 -5.59 -38.03 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.90 Total: -1.63 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 1.38 Total: 0.59 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.06 Total: -40.51 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -1.16 Total: -18.07 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.44 -5.59 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122797553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.490 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds