Wall clock time and date at job start Tue Mar 31 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30942 * 126.44441 * 2 1 4 4 C 1.35228 * 105.58051 * 180.13740 * 3 2 1 5 5 C 1.48446 * 126.40959 * 179.84522 * 4 3 2 6 6 O 1.21481 * 120.00006 * 5.40095 * 5 4 3 7 7 N 1.34772 * 120.00206 * 185.39921 * 5 4 3 8 8 C 1.46506 * 120.00006 * 5.20884 * 7 5 4 9 9 C 1.50701 * 109.46588 * 275.42767 * 8 7 5 10 10 H 1.07991 * 120.00497 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99512 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00078 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00156 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47401 * 89.99934 * 13 11 9 15 15 H 1.48505 * 109.47235 * 209.99989 * 13 11 9 16 16 H 1.48504 * 109.47219 * 329.99469 * 13 11 9 17 17 C 1.46498 * 120.00246 * 185.20374 * 7 5 4 18 18 C 1.53000 * 109.47629 * 270.00375 * 17 7 5 19 19 C 1.52994 * 109.47548 * 179.97438 * 18 17 7 20 20 C 1.52993 * 109.47542 * 174.99925 * 19 18 17 21 21 C 1.52999 * 109.47169 * 295.00260 * 19 18 17 22 22 N 1.30665 * 107.18583 * 359.58707 * 4 3 2 23 23 O 1.21291 * 110.11205 * 0.25926 * 22 4 3 24 24 H 1.08997 * 109.46745 * 180.29577 * 1 2 3 25 25 H 1.09001 * 109.47111 * 300.29801 * 1 2 3 26 26 H 1.09001 * 109.46814 * 60.30172 * 1 2 3 27 27 H 1.08995 * 109.46983 * 35.42565 * 8 7 5 28 28 H 1.08996 * 109.46993 * 155.43190 * 8 7 5 29 29 H 0.97000 * 120.00021 * 180.02562 * 12 11 9 30 30 H 1.08998 * 109.46955 * 30.00316 * 17 7 5 31 31 H 1.09001 * 109.47378 * 150.00188 * 17 7 5 32 32 H 1.09006 * 109.46636 * 299.99956 * 18 17 7 33 33 H 1.09001 * 109.46893 * 59.99516 * 18 17 7 34 34 H 1.09007 * 109.47084 * 54.99902 * 19 18 17 35 35 H 1.09001 * 109.46977 * 59.99418 * 20 19 18 36 36 H 1.08996 * 109.47651 * 180.02562 * 20 19 18 37 37 H 1.09007 * 109.47309 * 300.00313 * 20 19 18 38 38 H 1.09007 * 109.46825 * 299.99801 * 21 19 18 39 39 H 1.08999 * 109.47532 * 59.99474 * 21 19 18 40 40 H 1.09001 * 109.47419 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2849 1.0533 0.0000 4 6 3.5485 0.5717 -0.0031 5 6 4.7973 1.3743 -0.0076 6 8 4.7423 2.5839 0.0902 7 7 5.9921 0.7610 -0.1202 8 6 6.0547 -0.6842 -0.3526 9 6 5.9585 -1.4093 0.9649 10 1 5.8602 -0.8499 1.8834 11 6 5.9951 -2.7872 0.9976 12 7 5.9107 -3.4202 2.1473 13 14 6.1644 -3.7551 -0.5911 14 1 7.6032 -3.9716 -0.8879 15 1 5.4859 -5.0680 -0.4457 16 1 5.5385 -2.9950 -1.7029 17 6 7.2283 1.5394 -0.0103 18 6 7.6416 2.0387 -1.3962 19 6 8.9323 2.8521 -1.2814 20 6 9.4132 3.2459 -2.6794 21 6 8.6679 4.1146 -0.4585 22 7 3.4647 -0.7322 0.0042 23 8 2.3013 -1.0754 0.0061 24 1 -0.3633 -1.0276 0.0053 25 1 -0.3633 0.5185 0.8873 26 1 -0.3633 0.5092 -0.8927 27 1 5.2266 -0.9851 -0.9943 28 1 6.9988 -0.9337 -0.8367 29 1 5.9368 -4.3896 2.1703 30 1 7.0635 2.3918 0.6487 31 1 8.0185 0.9105 0.3998 32 1 7.8064 1.1862 -2.0553 33 1 6.8514 2.6676 -1.8064 34 1 9.6977 2.2516 -0.7897 35 1 8.6478 3.8463 -3.1711 36 1 10.3329 3.8250 -2.5976 37 1 9.6015 2.3464 -3.2656 38 1 7.9025 4.7151 -0.9503 39 1 8.3254 3.8341 0.5375 40 1 9.5874 4.6944 -0.3771 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124255113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:43 Heat of formation + Delta-G solvation = 31.458965 kcal Electronic energy + Delta-G solvation = -22797.089914 eV Core-core repulsion = 19422.672435 eV Total energy + Delta-G solvation = -3374.417479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.12607 -39.33467 -36.70187 -35.27501 -35.02079 -33.06885 -32.48846 -29.75108 -28.46089 -27.64830 -27.07495 -25.25971 -22.98451 -22.76831 -22.09475 -19.87834 -19.11814 -17.82653 -16.96804 -16.93662 -16.50892 -15.58277 -15.10888 -14.59303 -14.33467 -14.16400 -13.65663 -13.42126 -13.38591 -13.34234 -13.00334 -12.68196 -12.33595 -12.25548 -12.15451 -11.75230 -11.44978 -11.21666 -11.11715 -11.06015 -10.86675 -10.74064 -10.53172 -10.42485 -10.27248 -10.16267 -9.72996 -9.56354 -9.50621 -8.64477 -7.92048 -6.16143 -4.14461 1.51201 2.12058 3.14842 3.21225 3.23071 3.30656 3.31596 3.69823 4.31264 4.32888 4.47402 4.98346 5.03192 5.06595 5.16965 5.24130 5.32000 5.35426 5.50925 5.66385 5.67002 5.73782 5.80511 5.89022 5.92363 5.99408 6.02833 6.15765 6.21712 6.30217 6.32359 6.40680 6.52367 6.56229 6.73785 7.20141 7.46431 7.88648 8.34316 8.50162 8.72865 8.85907 9.43736 10.96932 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.007001 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.624626 B = 3998.402663 C = 5675.667099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.147 3.853 3 N -0.448 5.448 4 C 0.119 3.881 5 C 0.610 3.390 6 O -0.535 6.535 7 N -0.573 5.573 8 C 0.203 3.797 9 C -0.520 4.520 10 H 0.073 0.927 11 C 0.084 3.916 12 N -0.892 5.892 13 Si 0.870 3.130 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.265 1.265 17 C 0.121 3.879 18 C -0.131 4.131 19 C -0.093 4.093 20 C -0.145 4.145 21 C -0.148 4.148 22 N -0.274 5.274 23 O 0.093 5.907 24 H 0.094 0.906 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.265 0.735 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 7.125 -7.667 10.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 N -0.182 5.182 4 C -0.154 4.154 5 C 0.394 3.606 6 O -0.411 6.411 7 N -0.303 5.303 8 C 0.082 3.918 9 C -0.559 4.559 10 H 0.091 0.909 11 C -0.119 4.119 12 N -0.530 5.530 13 Si 0.697 3.303 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.189 1.189 17 C -0.001 4.001 18 C -0.169 4.169 19 C -0.113 4.113 20 C -0.202 4.202 21 C -0.206 4.206 22 N 0.024 4.976 23 O 0.021 5.979 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.402 7.548 -7.522 10.923 hybrid contribution -0.076 -0.933 -0.600 1.111 sum -2.478 6.615 -8.122 10.764 Atomic orbital electron populations 1.20275 0.80605 1.05231 1.05157 1.28800 0.98933 0.80999 0.98640 1.71870 0.99483 1.28496 1.18348 1.25426 0.94530 0.88120 1.07312 1.16316 0.81045 0.85442 0.77842 1.90720 1.86266 1.12712 1.51379 1.47782 1.03970 1.10612 1.67976 1.20102 0.97785 0.75262 0.98650 1.21124 1.51064 0.91645 0.92029 0.90877 1.24727 0.94079 0.97292 0.95820 1.69885 1.49740 1.08644 1.24742 0.86948 0.78541 0.80194 0.84659 1.20163 1.20817 1.18918 1.21526 0.85667 0.95944 0.96976 1.22032 0.97207 0.99698 0.97981 1.21044 0.97201 0.96750 0.96259 1.21820 1.00674 1.01142 0.96580 1.21888 1.01057 0.97191 1.00427 1.75746 0.94903 1.14234 1.12669 1.85447 1.12110 1.36142 1.64152 0.88673 0.88311 0.88359 0.93923 0.94887 0.92485 0.90169 0.89728 0.91818 0.91580 0.91027 0.92838 0.92921 0.92829 0.92649 0.92198 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.48 10.51 36.01 0.38 -0.10 16 2 C 0.15 2.34 8.50 -13.00 -0.11 2.23 16 3 N -0.45 -8.90 11.57 -9.93 -0.11 -9.02 16 4 C 0.12 2.67 7.60 -156.18 -1.19 1.48 16 5 C 0.61 14.04 7.65 -12.06 -0.09 13.95 16 6 O -0.53 -12.79 16.73 5.38 0.09 -12.70 16 7 N -0.57 -12.47 2.47 -175.95 -0.43 -12.90 16 8 C 0.20 4.76 3.82 -5.19 -0.02 4.74 16 9 C -0.52 -14.16 8.30 -34.44 -0.29 -14.45 16 10 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 11 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 12 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 13 Si 0.87 20.71 27.47 -169.99 -4.67 16.04 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 17 C 0.12 2.19 5.10 -4.04 -0.02 2.17 16 18 C -0.13 -2.00 5.01 -26.73 -0.13 -2.13 16 19 C -0.09 -1.17 2.92 -90.63 -0.26 -1.43 16 20 C -0.14 -1.58 9.19 37.15 0.34 -1.24 16 21 C -0.15 -1.81 8.95 37.16 0.33 -1.48 16 22 N -0.27 -6.20 7.78 30.93 0.24 -5.96 16 23 O 0.09 1.76 11.29 17.98 0.20 1.97 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 1.04 5.00 -51.93 -0.26 0.78 16 28 H 0.03 0.74 7.46 -51.93 -0.39 0.35 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.08 1.46 5.92 -51.93 -0.31 1.15 16 31 H 0.08 1.49 8.07 -51.93 -0.42 1.07 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.77 6.56 -51.93 -0.34 0.43 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -33.40 333.98 -5.99 -39.39 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.95 Total: -2.16 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -1.16 Total: 5.98 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.46 Total: -53.55 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.29 Total: -10.73 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.40 -5.99 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124255113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.849 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds