Wall clock time and date at job start Tue Mar 31 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30942 * 126.44441 * 2 1 4 4 C 1.35228 * 105.58051 * 180.13740 * 3 2 1 5 5 C 1.48446 * 126.40959 * 179.84522 * 4 3 2 6 6 O 1.21481 * 120.00006 * 5.40095 * 5 4 3 7 7 N 1.34772 * 120.00206 * 185.39921 * 5 4 3 8 8 C 1.46506 * 120.00006 * 5.20884 * 7 5 4 9 9 C 1.50701 * 109.46588 * 275.42767 * 8 7 5 10 10 H 1.07991 * 120.00497 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99512 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00078 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00156 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47401 * 89.99934 * 13 11 9 15 15 H 1.48505 * 109.47235 * 209.99989 * 13 11 9 16 16 H 1.48504 * 109.47219 * 329.99469 * 13 11 9 17 17 C 1.46498 * 120.00246 * 185.20374 * 7 5 4 18 18 C 1.53000 * 109.47629 * 270.00375 * 17 7 5 19 19 C 1.52994 * 109.47548 * 179.97438 * 18 17 7 20 20 C 1.52993 * 109.47542 * 174.99925 * 19 18 17 21 21 C 1.52999 * 109.47169 * 295.00260 * 19 18 17 22 22 N 1.30665 * 107.18583 * 359.58707 * 4 3 2 23 23 O 1.21291 * 110.11205 * 0.25926 * 22 4 3 24 24 H 1.08997 * 109.46745 * 180.29577 * 1 2 3 25 25 H 1.09001 * 109.47111 * 300.29801 * 1 2 3 26 26 H 1.09001 * 109.46814 * 60.30172 * 1 2 3 27 27 H 1.08995 * 109.46983 * 35.42565 * 8 7 5 28 28 H 1.08996 * 109.46993 * 155.43190 * 8 7 5 29 29 H 0.97000 * 120.00021 * 180.02562 * 12 11 9 30 30 H 1.08998 * 109.46955 * 30.00316 * 17 7 5 31 31 H 1.09001 * 109.47378 * 150.00188 * 17 7 5 32 32 H 1.09006 * 109.46636 * 299.99956 * 18 17 7 33 33 H 1.09001 * 109.46893 * 59.99516 * 18 17 7 34 34 H 1.09007 * 109.47084 * 54.99902 * 19 18 17 35 35 H 1.09001 * 109.46977 * 59.99418 * 20 19 18 36 36 H 1.08996 * 109.47651 * 180.02562 * 20 19 18 37 37 H 1.09007 * 109.47309 * 300.00313 * 20 19 18 38 38 H 1.09007 * 109.46825 * 299.99801 * 21 19 18 39 39 H 1.08999 * 109.47532 * 59.99474 * 21 19 18 40 40 H 1.09001 * 109.47419 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2849 1.0533 0.0000 4 6 3.5485 0.5717 -0.0031 5 6 4.7973 1.3743 -0.0076 6 8 4.7423 2.5839 0.0902 7 7 5.9921 0.7610 -0.1202 8 6 6.0547 -0.6842 -0.3526 9 6 5.9585 -1.4093 0.9649 10 1 5.8602 -0.8499 1.8834 11 6 5.9951 -2.7872 0.9976 12 7 5.9107 -3.4202 2.1473 13 14 6.1644 -3.7551 -0.5911 14 1 7.6032 -3.9716 -0.8879 15 1 5.4859 -5.0680 -0.4457 16 1 5.5385 -2.9950 -1.7029 17 6 7.2283 1.5394 -0.0103 18 6 7.6416 2.0387 -1.3962 19 6 8.9323 2.8521 -1.2814 20 6 9.4132 3.2459 -2.6794 21 6 8.6679 4.1146 -0.4585 22 7 3.4647 -0.7322 0.0042 23 8 2.3013 -1.0754 0.0061 24 1 -0.3633 -1.0276 0.0053 25 1 -0.3633 0.5185 0.8873 26 1 -0.3633 0.5092 -0.8927 27 1 5.2266 -0.9851 -0.9943 28 1 6.9988 -0.9337 -0.8367 29 1 5.9368 -4.3896 2.1703 30 1 7.0635 2.3918 0.6487 31 1 8.0185 0.9105 0.3998 32 1 7.8064 1.1862 -2.0553 33 1 6.8514 2.6676 -1.8064 34 1 9.6977 2.2516 -0.7897 35 1 8.6478 3.8463 -3.1711 36 1 10.3329 3.8250 -2.5976 37 1 9.6015 2.3464 -3.2656 38 1 7.9025 4.7151 -0.9503 39 1 8.3254 3.8341 0.5375 40 1 9.5874 4.6944 -0.3771 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124255113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:42 Heat of formation + Delta-G solvation = 8.302166 kcal Electronic energy + Delta-G solvation = -22798.094069 eV Core-core repulsion = 19422.672435 eV Total energy + Delta-G solvation = -3375.421633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.69027 -41.05621 -38.02931 -36.74367 -36.68620 -34.54379 -34.42557 -31.19461 -29.69504 -29.41274 -28.01936 -26.82324 -24.71584 -24.39383 -23.59340 -20.97470 -20.67798 -19.46234 -18.99074 -18.59432 -18.19358 -17.21007 -16.51973 -16.13332 -15.94404 -15.48354 -15.23573 -14.79485 -14.56616 -14.44168 -14.33423 -14.15646 -13.87026 -13.60580 -13.18984 -12.95161 -12.87924 -12.82010 -12.67291 -12.52287 -12.32779 -12.15445 -12.04974 -11.85281 -11.67217 -11.59641 -11.48222 -11.38806 -11.01870 -10.73043 -9.69026 -8.29936 -6.33736 -0.03348 0.64553 1.34005 1.36404 1.46012 1.59324 1.94128 2.01244 2.33203 2.79368 2.97512 3.06854 3.77134 3.88075 3.93106 4.03017 4.24664 4.40582 4.46808 4.52648 4.59188 4.63070 4.69347 4.74880 4.78948 4.82638 4.89200 4.98318 5.02107 5.08839 5.10314 5.16393 5.29452 5.39733 5.43319 5.47015 5.53976 6.01242 6.30158 6.62429 6.80734 7.15937 7.28753 8.87108 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.007001 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.624626 B = 3998.402663 C = 5675.667099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.174 3.826 3 N -0.479 5.479 4 C 0.096 3.904 5 C 0.601 3.399 6 O -0.554 6.554 7 N -0.575 5.575 8 C 0.214 3.786 9 C -0.515 4.515 10 H 0.022 0.978 11 C 0.033 3.967 12 N -0.941 5.941 13 Si 0.933 3.067 14 H -0.260 1.260 15 H -0.280 1.280 16 H -0.250 1.250 17 C 0.116 3.884 18 C -0.119 4.119 19 C -0.090 4.090 20 C -0.141 4.141 21 C -0.147 4.147 22 N -0.307 5.307 23 O 0.095 5.905 24 H 0.125 0.875 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.268 0.732 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 6.899 -9.733 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.045 4.045 3 N -0.213 5.213 4 C -0.176 4.176 5 C 0.385 3.615 6 O -0.432 6.432 7 N -0.304 5.304 8 C 0.092 3.908 9 C -0.553 4.553 10 H 0.040 0.960 11 C -0.166 4.166 12 N -0.581 5.581 13 Si 0.756 3.244 14 H -0.185 1.185 15 H -0.206 1.206 16 H -0.174 1.174 17 C -0.006 4.006 18 C -0.158 4.158 19 C -0.109 4.109 20 C -0.198 4.198 21 C -0.205 4.205 22 N -0.009 5.009 23 O 0.022 5.978 24 H 0.144 0.856 25 H 0.136 0.864 26 H 0.143 0.857 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.811 7.352 -9.597 12.412 hybrid contribution -0.105 -0.805 0.149 0.825 sum -2.916 6.547 -9.448 11.859 Atomic orbital electron populations 1.20817 0.75256 1.07976 1.07163 1.30175 1.00898 0.79061 0.94400 1.71876 0.98932 1.29976 1.20506 1.25463 0.95275 0.88409 1.08488 1.16582 0.81730 0.85496 0.77655 1.90683 1.86686 1.13344 1.52445 1.47889 1.04842 1.10260 1.67443 1.19886 0.98474 0.75806 0.96588 1.21100 1.50702 0.91771 0.91756 0.96003 1.25526 0.93571 0.98214 0.99270 1.70030 1.51591 1.09097 1.27385 0.85935 0.79435 0.78540 0.80468 1.18483 1.20595 1.17371 1.21766 0.84405 0.95442 0.98958 1.21944 0.98215 0.99890 0.95743 1.21053 0.95750 0.96439 0.97701 1.21788 1.01310 1.01579 0.95162 1.21878 1.01831 0.97286 0.99466 1.75692 0.96842 1.14440 1.13947 1.85378 1.11533 1.36876 1.64033 0.85605 0.86430 0.85692 0.93944 0.92960 0.92311 0.90790 0.89351 0.91413 0.93029 0.90192 0.93063 0.91174 0.92386 0.93397 0.93580 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.76 10.51 71.24 0.75 -0.01 16 2 C 0.17 5.28 8.50 88.36 0.75 6.03 16 3 N -0.48 -18.97 11.57 -302.77 -3.50 -22.48 16 4 C 0.10 4.39 7.60 137.33 1.04 5.43 16 5 C 0.60 28.52 7.65 86.97 0.67 29.19 16 6 O -0.55 -27.35 16.73 -3.66 -0.06 -27.41 16 7 N -0.57 -25.53 2.47 -828.89 -2.05 -27.58 16 8 C 0.21 10.05 3.82 85.63 0.33 10.37 16 9 C -0.51 -28.76 8.30 25.60 0.21 -28.55 16 10 H 0.02 1.41 8.06 -2.92 -0.02 1.39 16 11 C 0.03 1.86 5.47 84.65 0.46 2.32 16 12 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 13 Si 0.93 42.08 27.47 68.60 1.88 43.96 16 14 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 16 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 17 C 0.12 4.24 5.10 86.38 0.44 4.68 16 18 C -0.12 -3.59 5.01 30.59 0.15 -3.44 16 19 C -0.09 -2.13 2.92 -10.80 -0.03 -2.16 16 20 C -0.14 -2.75 9.19 71.98 0.66 -2.09 16 21 C -0.15 -3.46 8.95 71.98 0.64 -2.82 16 22 N -0.31 -14.03 7.78 -59.35 -0.46 -14.49 16 23 O 0.09 3.53 11.29 74.39 0.84 4.37 16 24 H 0.13 1.06 8.14 -2.39 -0.02 1.05 16 25 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.12 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.04 2.04 5.00 -2.39 -0.01 2.03 16 28 H 0.05 2.26 7.46 -2.39 -0.02 2.24 16 29 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.07 2.79 5.92 -2.39 -0.01 2.78 16 31 H 0.09 3.13 8.07 -2.39 -0.02 3.12 16 32 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 38 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.05 1.19 6.56 -2.39 -0.02 1.18 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -75.78 333.98 4.01 -71.78 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.98 Total: 9.70 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 6.08 Total: 18.96 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -5.71 Total: -121.35 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.78 Total: -23.04 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.96 kcal Total: -75.78 4.01 -71.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124255113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.078 kcal (2) G-P(sol) polarization free energy of solvation -75.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds