Wall clock time and date at job start Tue Mar 31 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30171 * 126.80535 * 2 1 4 4 O 1.20914 * 111.61004 * 180.02562 * 3 2 1 5 5 C 1.34042 * 111.56435 * 359.76261 * 4 3 2 6 6 C 1.50707 * 126.77811 * 180.28831 * 5 4 3 7 7 C 1.35452 * 106.44612 * 0.38118 * 5 4 3 8 8 C 1.50700 * 128.00588 * 179.91753 * 7 5 4 9 9 N 1.46498 * 109.46769 * 269.67011 * 8 7 5 10 10 C 1.34777 * 119.99828 * 179.72341 * 9 8 7 11 11 O 1.21593 * 119.99949 * 0.28071 * 10 9 8 12 12 N 1.34777 * 120.00128 * 180.27942 * 10 9 8 13 13 C 1.46499 * 120.00065 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47198 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.47321 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47554 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99751 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00505 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99687 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00201 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47135 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47080 * 119.99899 * 20 18 16 23 23 H 1.48497 * 109.47104 * 240.00206 * 20 18 16 24 24 H 1.09004 * 109.47341 * 269.98129 * 1 2 3 25 25 H 1.08999 * 109.47074 * 29.97850 * 1 2 3 26 26 H 1.09004 * 109.46919 * 149.97826 * 1 2 3 27 27 H 1.09009 * 109.46842 * 270.10840 * 6 5 4 28 28 H 1.08997 * 109.47287 * 30.10725 * 6 5 4 29 29 H 1.08994 * 109.47260 * 150.11159 * 6 5 4 30 30 H 1.09004 * 109.47210 * 149.67369 * 8 7 5 31 31 H 1.08994 * 109.47121 * 29.67338 * 8 7 5 32 32 H 0.97001 * 120.00384 * 0.02562 * 9 8 7 33 33 H 0.97000 * 119.99549 * 359.97438 * 12 10 9 34 34 H 1.09000 * 109.47602 * 299.99940 * 13 12 10 35 35 H 1.09006 * 109.46868 * 59.99976 * 13 12 10 36 36 H 1.09000 * 109.47211 * 300.00689 * 14 13 12 37 37 H 1.09007 * 109.46376 * 60.00147 * 14 13 12 38 38 H 1.09000 * 109.47686 * 300.00577 * 15 14 13 39 39 H 1.08998 * 109.47284 * 60.00513 * 15 14 13 40 40 H 0.97010 * 119.99934 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6024 -0.6068 0.0043 6 6 4.9022 -1.3696 0.0113 7 6 2.3539 -1.1321 -0.0006 8 6 1.9590 -2.5864 0.0000 9 7 1.8298 -3.0578 -1.3811 10 6 1.4878 -4.3381 -1.6269 11 8 1.2816 -5.1005 -0.7024 12 7 1.3744 -4.7733 -2.8974 13 6 1.0021 -6.1648 -3.1645 14 6 0.9434 -6.3959 -4.6759 15 6 0.5552 -7.8492 -4.9549 16 6 0.4979 -8.0770 -6.4435 17 1 0.7170 -7.2663 -7.1226 18 6 0.1660 -9.3203 -6.9384 19 7 -0.1012 -10.3073 -6.1114 20 14 0.0957 -9.6028 -8.7836 21 1 0.4366 -8.3422 -9.4907 22 1 1.0688 -10.6595 -9.1600 23 1 -1.2734 -10.0313 -9.1670 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 5.2201 -1.5551 -1.0148 28 1 5.6637 -0.7852 0.5276 29 1 4.7627 -2.3203 0.5259 30 1 1.0054 -2.7038 0.5147 31 1 2.7231 -3.1701 0.5132 32 1 1.9946 -2.4497 -2.1186 33 1 1.5385 -4.1650 -3.6348 34 1 1.7439 -6.8306 -2.7234 35 1 0.0246 -6.3696 -2.7277 36 1 0.2014 -5.7301 -5.1167 37 1 1.9207 -6.1908 -5.1129 38 1 1.2975 -8.5147 -4.5142 39 1 -0.4219 -8.0546 -4.5178 40 1 -0.3344 -11.1822 -6.4597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170879124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:21 Heat of formation + Delta-G solvation = 6.419727 kcal Electronic energy + Delta-G solvation = -20991.993724 eV Core-core repulsion = 17616.490462 eV Total energy + Delta-G solvation = -3375.503262 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.32253 -39.84937 -36.52245 -35.32290 -34.33537 -33.54665 -33.17970 -31.15238 -29.11092 -28.72874 -27.15703 -25.99049 -23.09119 -21.97697 -20.89070 -20.55198 -20.40689 -18.31213 -18.02653 -17.21027 -16.53915 -15.95473 -15.72677 -14.88569 -14.64538 -14.47342 -14.15882 -14.06563 -13.84603 -13.81742 -13.49735 -13.25275 -12.89180 -12.78782 -12.50540 -12.29535 -11.81254 -11.71244 -11.35121 -10.92781 -10.74057 -10.57565 -10.42774 -10.11824 -9.87198 -9.64658 -9.43117 -9.28432 -9.11764 -8.63866 -8.38230 -6.02693 -4.05682 1.00191 1.69995 2.66862 2.94235 3.29273 3.31909 3.36880 3.40296 3.77897 4.03836 4.36469 4.38987 4.45371 4.51882 4.87253 4.96044 5.03126 5.14400 5.24749 5.32558 5.33264 5.38133 5.50448 5.58367 5.69505 5.78318 5.80341 6.16998 6.31702 6.50691 6.61271 6.77808 7.00972 7.03582 7.63372 7.75890 7.89652 7.96380 8.09964 8.37293 8.70128 9.01303 9.58602 11.08639 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032619 B = 0.002397 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.182050 B =11678.610119 C =11689.707182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.037 3.963 3 N -0.367 5.367 4 O 0.096 5.904 5 C -0.005 4.005 6 C -0.079 4.079 7 C -0.225 4.225 8 C 0.222 3.778 9 N -0.749 5.749 10 C 0.701 3.299 11 O -0.592 6.592 12 N -0.741 5.741 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.023 3.977 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.395 0.605 33 H 0.394 0.606 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.248 21.255 12.786 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 N -0.074 5.074 4 O 0.033 5.967 5 C -0.070 4.070 6 C -0.136 4.136 7 C -0.230 4.230 8 C 0.098 3.902 9 N -0.406 5.406 10 C 0.401 3.599 11 O -0.470 6.470 12 N -0.395 5.395 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.228 0.772 33 H 0.227 0.773 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.786 21.646 13.661 26.480 hybrid contribution -0.009 -0.396 -1.711 1.756 sum 6.776 21.250 11.950 25.304 Atomic orbital electron populations 1.20227 0.85694 1.04118 1.03673 1.23511 0.99071 0.88208 1.01507 1.73880 0.89193 1.23803 1.20534 1.84839 1.21755 1.22388 1.67680 1.24434 0.98310 0.83883 1.00329 1.20444 0.89818 0.98754 1.04589 1.20979 0.91894 0.97257 1.12857 1.19117 1.02213 0.85765 0.83132 1.45160 1.76592 1.10767 1.08105 1.15981 0.78294 0.81669 0.83972 1.90932 1.57671 1.55020 1.43392 1.45393 1.74534 1.14193 1.05355 1.21525 1.00286 0.78948 0.98066 1.21890 1.00897 1.01824 0.91221 1.19031 0.97060 0.88594 0.96730 1.21239 1.46851 0.95933 0.91962 0.92620 1.25032 0.95362 0.96229 0.97881 1.69977 1.47147 1.01971 1.34168 0.86531 0.77646 0.78168 0.85608 1.19774 1.21001 1.20999 0.89904 0.90371 0.89661 0.88942 0.89563 0.88636 0.90259 0.90327 0.77158 0.77310 0.91895 0.91919 0.92781 0.92781 0.96230 0.96229 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.39 36.01 0.37 -0.20 16 2 C 0.04 0.35 7.33 -82.10 -0.60 -0.26 16 3 N -0.37 -4.00 12.07 33.42 0.40 -3.59 16 4 O 0.10 0.93 11.20 17.17 0.19 1.13 16 5 C 0.00 -0.04 7.49 -35.30 -0.26 -0.30 16 6 C -0.08 -0.36 10.30 36.01 0.37 0.01 16 7 C -0.23 -1.93 5.69 -104.42 -0.59 -2.52 16 8 C 0.22 2.06 6.00 -5.19 -0.03 2.03 16 9 N -0.75 -7.59 5.55 -66.41 -0.37 -7.96 16 10 C 0.70 10.10 8.57 -86.92 -0.74 9.35 16 11 O -0.59 -11.06 16.34 5.28 0.09 -10.98 16 12 N -0.74 -10.29 5.56 -65.22 -0.36 -10.65 16 13 C 0.13 2.34 5.67 -4.04 -0.02 2.32 16 14 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 15 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 16 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 0.40 7.43 -51.93 -0.39 0.01 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.73 7.44 -51.93 -0.39 0.34 16 32 H 0.40 3.19 8.48 -40.82 -0.35 2.84 16 33 H 0.39 4.35 8.49 -40.82 -0.35 4.00 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -33.93 346.70 -7.39 -41.32 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.08 Total: -0.04 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -2.20 Total: -4.83 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.41 Total: -48.15 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.28 Total: -9.85 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.93 -7.39 -41.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170879124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.738 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds