Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35353 * 116.99948 * 2 1 4 4 C 1.38993 * 126.40628 * 94.02460 * 3 2 1 5 5 C 1.46933 * 126.49414 * 0.02562 * 4 3 2 6 6 O 1.21660 * 120.00118 * 89.99805 * 5 4 3 7 7 N 1.34781 * 119.99526 * 269.99744 * 5 4 3 8 8 C 1.46499 * 119.99373 * 179.72605 * 7 5 4 9 9 C 1.52998 * 109.47002 * 180.27646 * 8 7 5 10 10 C 1.52998 * 109.47091 * 179.97438 * 9 8 7 11 11 C 1.50709 * 109.46968 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99821 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99947 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00164 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00105 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47352 * 89.99882 * 15 13 11 17 17 H 1.48503 * 109.47015 * 210.00034 * 15 13 11 18 18 H 1.48504 * 109.46858 * 329.99889 * 15 13 11 19 19 C 1.41455 * 107.00858 * 180.26148 * 4 3 2 20 20 C 1.50699 * 125.93225 * 179.73722 * 19 4 3 21 21 N 1.30319 * 108.13774 * 359.55647 * 19 4 3 22 22 N 1.34659 * 126.40406 * 274.02438 * 3 2 1 23 23 C 1.46497 * 125.74210 * 359.96612 * 22 3 2 24 24 H 1.08994 * 109.46976 * 304.62743 * 1 2 3 25 25 H 1.09004 * 109.46813 * 64.63107 * 1 2 3 26 26 H 1.09000 * 109.46762 * 184.62554 * 1 2 3 27 27 H 0.96997 * 120.00166 * 0.02562 * 7 5 4 28 28 H 1.09000 * 109.47167 * 300.27389 * 8 7 5 29 29 H 1.08996 * 109.47462 * 60.27783 * 8 7 5 30 30 H 1.09000 * 109.46950 * 299.99876 * 9 8 7 31 31 H 1.09002 * 109.47570 * 59.99702 * 9 8 7 32 32 H 1.08992 * 109.47437 * 300.00135 * 10 9 8 33 33 H 1.09004 * 109.47111 * 60.00497 * 10 9 8 34 34 H 0.96995 * 120.00248 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.47211 * 90.00134 * 20 19 4 36 36 H 1.09000 * 109.47122 * 209.99888 * 20 19 4 37 37 H 1.08997 * 109.47208 * 329.99647 * 20 19 4 38 38 H 1.09003 * 109.47113 * 94.17819 * 23 22 3 39 39 H 1.09002 * 109.46633 * 214.17325 * 23 22 3 40 40 H 1.08995 * 109.47373 * 334.17062 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0436 1.2060 0.0000 4 6 2.4880 1.9054 1.1159 5 6 2.3802 1.4755 2.5168 6 8 3.2721 0.8206 3.0225 7 7 1.2931 1.8066 3.2414 8 6 1.1828 1.3728 4.6364 9 6 -0.1394 1.8717 5.2226 10 6 -0.2548 1.4181 6.6792 11 6 -1.5570 1.9101 7.2568 12 1 -2.2346 2.4880 6.6459 13 6 -1.8837 1.6214 8.5648 14 7 -3.0203 2.0503 9.0688 15 14 -0.7120 0.6212 9.6213 16 1 0.2283 1.5347 10.3187 17 1 -1.4874 -0.1515 10.6249 18 1 0.0544 -0.3150 8.7601 19 6 3.0589 3.1120 0.6477 20 6 3.6682 4.1925 1.5034 21 7 2.9699 3.1252 -0.6524 22 7 2.3386 1.9526 -1.0811 23 6 2.0481 1.5965 -2.4722 24 1 -0.3633 0.5839 0.8456 25 1 -0.3633 0.4403 -0.9286 26 1 -0.3633 -1.0243 0.0829 27 1 0.5818 2.3283 2.8381 28 1 1.2126 0.2842 4.6818 29 1 2.0129 1.7833 5.2113 30 1 -0.1692 2.9603 5.1772 31 1 -0.9696 1.4612 4.6478 32 1 -0.2252 0.3295 6.7243 33 1 0.5753 1.8283 7.2544 34 1 -3.2503 1.8469 9.9888 35 1 4.7310 3.9924 1.6392 36 1 3.5399 5.1584 1.0149 37 1 3.1743 4.2083 2.4749 38 1 1.0957 2.0362 -2.7685 39 1 2.8402 1.9766 -3.1174 40 1 1.9925 0.5120 -2.5656 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171804230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = -5.920985 kcal Electronic energy + Delta-G solvation = -21774.128007 eV Core-core repulsion = 18398.089612 eV Total energy + Delta-G solvation = -3376.038395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.80638 -39.06284 -38.51010 -35.44766 -34.23966 -33.25049 -31.50841 -30.45385 -29.65436 -27.85261 -26.98395 -25.94844 -23.31151 -21.93816 -20.79554 -20.56245 -19.75728 -18.14947 -17.02844 -16.82319 -16.60793 -16.22822 -15.61985 -15.12559 -15.05762 -14.66284 -14.18040 -13.83315 -13.79498 -13.50608 -13.43826 -13.00143 -12.73341 -12.70254 -12.45481 -12.09886 -11.96618 -11.89309 -11.53891 -11.07031 -10.88807 -10.52863 -10.24157 -9.97662 -9.78368 -9.58236 -9.47966 -9.22848 -8.81915 -8.78632 -8.55592 -6.06562 -4.05293 1.11848 1.84664 2.16017 2.69475 3.14963 3.31718 3.39259 3.43790 3.48586 4.13571 4.44563 4.58976 4.70466 4.71734 4.83643 4.89164 4.99912 5.05438 5.18734 5.27677 5.28805 5.44139 5.58243 5.60045 5.67764 5.69677 5.80421 6.03267 6.24643 6.38136 6.45663 6.72025 6.80328 7.02611 7.23326 7.29783 7.36762 7.67947 7.77215 8.39111 8.50242 8.97225 9.55858 11.06689 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026162 B = 0.003324 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.994750 B = 8420.638075 C = 8770.882648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.292 3.708 4 C -0.281 4.281 5 C 0.597 3.403 6 O -0.534 6.534 7 N -0.718 5.718 8 C 0.114 3.886 9 C -0.113 4.113 10 C -0.011 4.011 11 C -0.522 4.522 12 H 0.071 0.929 13 C 0.066 3.934 14 N -0.904 5.904 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.264 1.264 19 C 0.123 3.877 20 C -0.078 4.078 21 N -0.279 5.279 22 N -0.370 5.370 23 C 0.095 3.905 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.109 0.891 27 H 0.398 0.602 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.781 0.341 -23.522 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.214 6.214 3 C 0.120 3.880 4 C -0.297 4.297 5 C 0.380 3.620 6 O -0.410 6.410 7 N -0.369 5.369 8 C -0.009 4.009 9 C -0.150 4.150 10 C -0.049 4.049 11 C -0.560 4.560 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.188 1.188 19 C -0.043 4.043 20 C -0.137 4.137 21 N -0.104 5.104 22 N -0.159 5.159 23 C -0.046 4.046 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.127 0.873 27 H 0.232 0.768 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.570 0.195 -24.144 25.972 hybrid contribution -0.315 -0.740 0.949 1.244 sum 9.255 -0.545 -23.195 24.979 Atomic orbital electron populations 1.23263 0.76753 1.04871 1.01553 1.86061 1.21435 1.20844 1.93045 1.19183 0.97102 0.85325 0.86388 1.19891 1.17818 0.98670 0.93320 1.17037 0.82030 0.78986 0.83897 1.90796 1.39502 1.38727 1.71991 1.46177 1.21172 1.55834 1.13723 1.21685 0.99783 0.99851 0.79595 1.21700 0.93758 1.00735 0.98857 1.19506 0.97695 0.96649 0.91072 1.21098 1.02940 1.34580 0.97354 0.91041 1.25027 0.95093 0.95468 0.97884 1.69911 1.22771 1.46373 1.15212 0.86779 0.81245 0.80932 0.80379 1.20211 1.21403 1.18848 1.22200 0.96541 0.94453 0.91124 1.20309 1.01092 0.94592 0.97700 1.77145 1.19629 1.01175 1.12489 1.48754 1.46079 1.14467 1.06628 1.21957 1.02926 1.02140 0.77539 0.92043 0.93045 0.87300 0.76793 0.91716 0.91579 0.92064 0.92227 0.96301 0.96677 0.92701 0.89682 0.90079 0.89894 0.90364 0.88750 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.13 101.05 1.12 1.36 16 2 O -0.30 -3.56 10.37 -17.75 -0.18 -3.74 16 3 C 0.29 3.69 7.02 -16.03 -0.11 3.57 16 4 C -0.28 -3.95 5.89 -104.87 -0.62 -4.56 16 5 C 0.60 9.57 7.34 -12.74 -0.09 9.48 16 6 O -0.53 -10.68 17.11 5.22 0.09 -10.59 16 7 N -0.72 -10.31 5.55 -61.54 -0.34 -10.65 16 8 C 0.11 1.88 5.67 -4.04 -0.02 1.86 16 9 C -0.11 -2.06 5.27 -26.73 -0.14 -2.21 16 10 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 11 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 12 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 13 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 15 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 19 C 0.12 1.55 7.26 -82.01 -0.60 0.95 16 20 C -0.08 -0.77 10.28 36.01 0.37 -0.40 16 21 N -0.28 -3.47 12.48 33.91 0.42 -3.04 16 22 N -0.37 -4.07 3.99 -67.67 -0.27 -4.34 16 23 C 0.10 0.59 11.41 59.85 0.68 1.27 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.40 4.77 8.45 -40.82 -0.35 4.42 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 33 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.45 8.03 -51.93 -0.42 0.04 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -35.63 347.24 -5.08 -40.71 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.18 Total: -1.55 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 0.05 Total: -2.12 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.58 Total: -44.90 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.09 Total: -14.34 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.63 -5.08 -40.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171804230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.788 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds