Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35353 * 116.99948 * 2 1 4 4 C 1.38993 * 126.40628 * 94.02460 * 3 2 1 5 5 C 1.46933 * 126.49414 * 0.02562 * 4 3 2 6 6 O 1.21660 * 120.00118 * 89.99805 * 5 4 3 7 7 N 1.34781 * 119.99526 * 269.99744 * 5 4 3 8 8 C 1.46499 * 119.99373 * 179.72605 * 7 5 4 9 9 C 1.52998 * 109.47002 * 180.27646 * 8 7 5 10 10 C 1.52998 * 109.47091 * 179.97438 * 9 8 7 11 11 C 1.50709 * 109.46968 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99821 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99947 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00164 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00105 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47352 * 89.99882 * 15 13 11 17 17 H 1.48503 * 109.47015 * 210.00034 * 15 13 11 18 18 H 1.48504 * 109.46858 * 329.99889 * 15 13 11 19 19 C 1.41455 * 107.00858 * 180.26148 * 4 3 2 20 20 C 1.50699 * 125.93225 * 179.73722 * 19 4 3 21 21 N 1.30319 * 108.13774 * 359.55647 * 19 4 3 22 22 N 1.34659 * 126.40406 * 274.02438 * 3 2 1 23 23 C 1.46497 * 125.74210 * 359.96612 * 22 3 2 24 24 H 1.08994 * 109.46976 * 304.62743 * 1 2 3 25 25 H 1.09004 * 109.46813 * 64.63107 * 1 2 3 26 26 H 1.09000 * 109.46762 * 184.62554 * 1 2 3 27 27 H 0.96997 * 120.00166 * 0.02562 * 7 5 4 28 28 H 1.09000 * 109.47167 * 300.27389 * 8 7 5 29 29 H 1.08996 * 109.47462 * 60.27783 * 8 7 5 30 30 H 1.09000 * 109.46950 * 299.99876 * 9 8 7 31 31 H 1.09002 * 109.47570 * 59.99702 * 9 8 7 32 32 H 1.08992 * 109.47437 * 300.00135 * 10 9 8 33 33 H 1.09004 * 109.47111 * 60.00497 * 10 9 8 34 34 H 0.96995 * 120.00248 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.47211 * 90.00134 * 20 19 4 36 36 H 1.09000 * 109.47122 * 209.99888 * 20 19 4 37 37 H 1.08997 * 109.47208 * 329.99647 * 20 19 4 38 38 H 1.09003 * 109.47113 * 94.17819 * 23 22 3 39 39 H 1.09002 * 109.46633 * 214.17325 * 23 22 3 40 40 H 1.08995 * 109.47373 * 334.17062 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0436 1.2060 0.0000 4 6 2.4880 1.9054 1.1159 5 6 2.3802 1.4755 2.5168 6 8 3.2721 0.8206 3.0225 7 7 1.2931 1.8066 3.2414 8 6 1.1828 1.3728 4.6364 9 6 -0.1394 1.8717 5.2226 10 6 -0.2548 1.4181 6.6792 11 6 -1.5570 1.9101 7.2568 12 1 -2.2346 2.4880 6.6459 13 6 -1.8837 1.6214 8.5648 14 7 -3.0203 2.0503 9.0688 15 14 -0.7120 0.6212 9.6213 16 1 0.2283 1.5347 10.3187 17 1 -1.4874 -0.1515 10.6249 18 1 0.0544 -0.3150 8.7601 19 6 3.0589 3.1120 0.6477 20 6 3.6682 4.1925 1.5034 21 7 2.9699 3.1252 -0.6524 22 7 2.3386 1.9526 -1.0811 23 6 2.0481 1.5965 -2.4722 24 1 -0.3633 0.5839 0.8456 25 1 -0.3633 0.4403 -0.9286 26 1 -0.3633 -1.0243 0.0829 27 1 0.5818 2.3283 2.8381 28 1 1.2126 0.2842 4.6818 29 1 2.0129 1.7833 5.2113 30 1 -0.1692 2.9603 5.1772 31 1 -0.9696 1.4612 4.6478 32 1 -0.2252 0.3295 6.7243 33 1 0.5753 1.8283 7.2544 34 1 -3.2503 1.8469 9.9888 35 1 4.7310 3.9924 1.6392 36 1 3.5399 5.1584 1.0149 37 1 3.1743 4.2083 2.4749 38 1 1.0957 2.0362 -2.7685 39 1 2.8402 1.9766 -3.1174 40 1 1.9925 0.5120 -2.5656 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171804230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = -32.838195 kcal Electronic energy + Delta-G solvation = -21775.295225 eV Core-core repulsion = 18398.089612 eV Total energy + Delta-G solvation = -3377.205613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.70035 -40.33125 -39.33219 -36.96226 -35.16578 -34.97079 -33.28471 -31.38096 -30.45549 -29.09582 -28.09851 -26.77916 -24.83249 -23.11406 -22.21536 -21.64792 -20.92642 -19.17580 -18.83681 -17.88508 -17.63945 -17.10728 -16.93171 -16.43543 -16.20651 -15.77746 -15.52937 -15.10003 -14.77305 -14.62163 -14.45842 -14.29690 -13.79632 -13.71724 -13.58509 -13.35173 -13.10880 -12.75361 -12.71594 -12.68616 -12.38807 -11.94090 -11.77836 -11.57710 -11.35125 -11.31257 -11.04444 -10.74330 -10.30534 -10.11778 -9.73233 -8.27741 -6.31407 0.25316 1.05840 1.23609 1.38846 1.40423 1.47702 1.52158 2.24211 2.38120 2.43169 3.08345 3.33186 3.84924 3.96832 4.14468 4.17573 4.22128 4.24502 4.26403 4.32448 4.40638 4.52502 4.58414 4.64303 4.71268 4.79756 4.90444 4.91146 4.95700 5.06365 5.08822 5.37460 5.42416 5.51158 5.58285 5.66960 6.21327 6.29289 6.41606 6.51800 6.76829 7.18382 7.33554 8.88684 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026162 B = 0.003324 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.994750 B = 8420.638075 C = 8770.882648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.320 6.320 3 C 0.296 3.704 4 C -0.314 4.314 5 C 0.604 3.396 6 O -0.579 6.579 7 N -0.705 5.705 8 C 0.126 3.874 9 C -0.099 4.099 10 C -0.012 4.012 11 C -0.529 4.529 12 H 0.038 0.962 13 C 0.005 3.995 14 N -0.951 5.951 15 Si 0.946 3.054 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.247 1.247 19 C 0.119 3.881 20 C -0.078 4.078 21 N -0.291 5.291 22 N -0.364 5.364 23 C 0.084 3.916 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.126 0.874 27 H 0.411 0.589 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.266 0.734 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.624 -0.101 -24.990 26.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C 0.122 3.878 4 C -0.330 4.330 5 C 0.389 3.611 6 O -0.459 6.459 7 N -0.355 5.355 8 C 0.002 3.998 9 C -0.137 4.137 10 C -0.050 4.050 11 C -0.567 4.567 12 H 0.056 0.944 13 C -0.192 4.192 14 N -0.592 5.592 15 Si 0.770 3.230 16 H -0.192 1.192 17 H -0.212 1.212 18 H -0.171 1.171 19 C -0.047 4.047 20 C -0.137 4.137 21 N -0.117 5.117 22 N -0.153 5.153 23 C -0.055 4.055 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.144 0.856 27 H 0.248 0.752 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.391 -0.223 -25.665 27.689 hybrid contribution -0.688 -0.591 1.279 1.569 sum 9.702 -0.814 -24.385 26.257 Atomic orbital electron populations 1.23523 0.74743 1.06180 1.02602 1.86033 1.23357 1.20434 1.93158 1.19222 0.96648 0.85291 0.86635 1.19808 1.20453 1.00203 0.92526 1.17270 0.81303 0.77895 0.84598 1.90765 1.41097 1.40910 1.73126 1.45983 1.21329 1.55427 1.12797 1.21385 0.98415 0.99340 0.80627 1.21474 0.94980 1.01003 0.96208 1.19469 0.95163 0.96615 0.93768 1.21465 1.04275 1.33713 0.97243 0.94379 1.25969 0.96808 0.96853 0.99552 1.70056 1.24993 1.48309 1.15851 0.85716 0.79090 0.79623 0.78597 1.19242 1.21151 1.17066 1.22527 0.96282 0.94510 0.91399 1.20395 1.01069 0.94818 0.97391 1.77107 1.20196 1.02064 1.12333 1.49092 1.44795 1.13588 1.07815 1.22377 1.04500 1.03390 0.75253 0.92740 0.90581 0.85617 0.75237 0.92332 0.91883 0.91578 0.91723 0.96064 0.96101 0.92540 0.89281 0.88234 0.90121 0.88147 0.87576 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.13 113.37 1.26 1.58 16 2 O -0.32 -6.99 10.37 -86.43 -0.90 -7.89 16 3 C 0.30 7.08 7.02 84.44 0.59 7.67 16 4 C -0.31 -8.58 5.89 -20.03 -0.12 -8.70 16 5 C 0.60 19.09 7.34 86.52 0.63 19.73 16 6 O -0.58 -23.24 17.11 -4.22 -0.07 -23.31 16 7 N -0.70 -19.52 5.55 -466.85 -2.59 -22.11 16 8 C 0.13 4.02 5.67 86.38 0.49 4.51 16 9 C -0.10 -3.50 5.27 30.59 0.16 -3.34 16 10 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 11 C -0.53 -29.71 9.66 25.60 0.25 -29.47 16 12 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 13 C 0.00 0.29 5.47 84.65 0.46 0.75 16 14 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 15 Si 0.95 44.12 27.47 68.60 1.88 46.01 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 18 H -0.25 -10.77 6.54 99.48 0.65 -10.11 16 19 C 0.12 2.87 7.26 43.58 0.32 3.19 16 20 C -0.08 -1.45 10.28 71.24 0.73 -0.72 16 21 N -0.29 -6.80 12.48 -46.63 -0.58 -7.38 16 22 N -0.36 -7.32 3.99 -479.81 -1.91 -9.24 16 23 C 0.08 0.81 11.41 127.77 1.46 2.27 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.41 9.31 8.45 -92.71 -0.78 8.53 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 33 H 0.02 0.92 7.57 -2.38 -0.02 0.90 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.50 8.01 -2.39 -0.02 1.49 16 38 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 40 H 0.11 0.75 8.03 -2.39 -0.02 0.73 16 Total: -1.00 -77.30 347.24 2.69 -74.61 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.20 Total: 11.13 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 6.36 Total: -2.97 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -4.79 Total: -97.58 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.97 Total: -31.20 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.01 kcal Total: -77.30 2.69 -74.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171804230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.775 kcal (2) G-P(sol) polarization free energy of solvation -77.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds